Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99448 * 2 1 4 4 H 1.48502 * 109.46882 * 239.99656 * 3 2 1 5 5 H 1.48489 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46889 * 120.00190 * 3 2 1 7 7 C 1.37876 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99934 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47089 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47156 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99933 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47397 * 179.97438 * 12 11 10 14 14 C 1.38289 * 119.92033 * 89.99781 * 13 12 11 15 15 C 1.38100 * 120.06996 * 180.02562 * 14 13 12 16 16 C 1.38919 * 119.92763 * 0.02562 * 15 14 13 17 17 N 1.39675 * 120.07351 * 179.97438 * 16 15 14 18 18 C 1.48533 * 110.99896 * 116.90242 * 17 16 15 19 19 C 1.54930 * 103.22949 * 159.71854 * 18 17 16 20 20 C 1.54600 * 102.91907 * 322.58575 * 19 18 17 21 21 C 1.47898 * 110.99628 * 234.29526 * 17 16 15 22 22 C 1.38912 * 119.84884 * 0.25058 * 16 15 14 23 23 C 1.38104 * 119.92261 * 359.51667 * 22 16 15 24 24 H 0.96993 * 120.00012 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47301 * 60.00117 * 9 7 2 26 26 H 1.08996 * 109.47253 * 299.99907 * 9 7 2 27 27 H 1.09000 * 109.47045 * 60.00026 * 10 9 7 28 28 H 1.08996 * 109.46752 * 299.99913 * 10 9 7 29 29 H 1.00902 * 111.00023 * 56.04396 * 11 10 9 30 30 H 1.08997 * 109.46918 * 59.99857 * 12 11 10 31 31 H 1.09005 * 109.47226 * 300.00075 * 12 11 10 32 32 H 1.07998 * 119.96703 * 0.02562 * 14 13 12 33 33 H 1.08006 * 120.03876 * 179.97438 * 15 14 13 34 34 H 1.09005 * 110.66495 * 278.15777 * 18 17 16 35 35 H 1.09002 * 110.66858 * 41.27945 * 18 17 16 36 36 H 1.09000 * 110.72569 * 204.23001 * 19 18 17 37 37 H 1.08995 * 110.72507 * 80.94108 * 19 18 17 38 38 H 1.09002 * 110.30609 * 263.03780 * 20 19 18 39 39 H 1.08995 * 110.30628 * 140.87567 * 20 19 18 40 40 H 1.08998 * 109.92060 * 333.51048 * 21 17 16 41 41 H 1.08999 * 109.91792 * 94.61420 * 21 17 16 42 42 H 1.07997 * 120.03468 * 179.74888 * 22 16 15 43 43 H 1.08004 * 119.96458 * 180.22726 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6621 -0.0005 11 7 1.5111 -4.9343 -0.0012 12 6 2.4356 -6.0758 -0.0018 13 6 1.6476 -7.3605 -0.0018 14 6 1.2864 -7.9481 -1.2003 15 6 0.5639 -9.1251 -1.2039 16 6 0.1995 -9.7183 -0.0018 17 7 -0.5317 -10.9083 -0.0019 18 6 0.2433 -12.0093 0.6255 19 6 -0.8499 -13.0369 1.0120 20 6 -2.0233 -12.1388 1.4665 21 6 -1.7644 -10.7729 0.8040 22 6 0.5590 -9.1222 1.2003 23 6 1.2857 -7.9478 1.1967 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8902 26 1 0.6249 -2.5571 0.8896 27 1 2.8721 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8905 29 1 0.8748 -4.9841 -0.7827 30 1 3.0636 -6.0352 0.8882 31 1 3.0635 -6.0343 -0.8918 32 1 1.5697 -7.4863 -2.1346 33 1 0.2818 -9.5834 -2.1403 34 1 0.9433 -12.4426 -0.0889 35 1 0.7679 -11.6537 1.5123 36 1 -0.5105 -13.6716 1.8306 37 1 -1.1362 -13.6383 0.1493 38 1 -2.0247 -12.0386 2.5519 39 1 -2.9713 -12.5524 1.1228 40 1 -1.6258 -10.0093 1.5693 41 1 -2.6017 -10.5049 0.1596 42 1 0.2738 -9.5786 2.1366 43 1 1.5688 -7.4857 2.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254573975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = 22.122695 kcal Electronic energy + Delta-G solvation = -19986.470720 eV Core-core repulsion = 17030.674926 eV Total energy + Delta-G solvation = -2955.795794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.36903 -38.22654 -35.81307 -33.35885 -32.43541 -30.96502 -30.15812 -29.18153 -28.10125 -25.06808 -23.48035 -22.77417 -21.93527 -21.21244 -20.61032 -20.24302 -17.43773 -16.40405 -16.30711 -15.75087 -15.27438 -14.69515 -14.43052 -14.33299 -14.29180 -13.99575 -13.46479 -13.38095 -13.17247 -12.68463 -12.29767 -12.24824 -12.08419 -11.90465 -11.68429 -11.47462 -11.19091 -11.16445 -10.95326 -10.90791 -10.88794 -10.54727 -9.99094 -9.41192 -9.17766 -8.91697 -8.82246 -8.48067 -8.34194 -7.81044 -5.98799 -4.01705 1.22803 1.43384 3.33932 3.38259 3.40547 3.66780 3.67227 4.33489 4.45025 4.48151 4.63542 4.83403 4.86300 4.97461 4.98192 5.12444 5.16896 5.30702 5.36860 5.41886 5.42438 5.48270 5.50376 5.65248 5.65572 5.70646 5.77781 5.83451 5.89884 6.09203 6.28626 6.34737 6.39219 6.43899 6.49613 6.71003 6.79325 6.97486 7.29292 7.46477 7.73152 7.82180 7.95189 8.09043 8.43870 9.05419 9.61930 11.12581 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.043050 B = 0.002525 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.249138 B =11085.601030 C =11355.510150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.094 3.906 13 C -0.073 4.073 14 C -0.109 4.109 15 C -0.095 4.095 16 C 0.071 3.929 17 N -0.483 5.483 18 C 0.038 3.962 19 C -0.124 4.124 20 C -0.132 4.132 21 C 0.035 3.965 22 C -0.151 4.151 23 C -0.088 4.088 24 H 0.261 0.739 25 H 0.014 0.986 26 H 0.025 0.975 27 H 0.059 0.941 28 H 0.016 0.984 29 H 0.337 0.663 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.455 -26.086 1.230 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.035 4.035 13 C -0.074 4.074 14 C -0.128 4.128 15 C -0.114 4.114 16 C -0.024 4.024 17 N -0.204 5.204 18 C -0.088 4.088 19 C -0.162 4.162 20 C -0.170 4.170 21 C -0.091 4.091 22 C -0.171 4.171 23 C -0.108 4.108 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.034 0.966 29 H 0.155 0.845 30 H 0.094 0.906 31 H 0.051 0.949 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.134 0.866 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.817 -26.078 1.375 26.127 hybrid contribution 0.906 1.259 -0.055 1.552 sum 0.089 -24.819 1.319 24.854 Atomic orbital electron populations 1.69965 1.06035 1.26717 1.50520 1.25011 0.94854 0.99227 0.95300 0.86636 0.79549 0.83086 0.78587 1.20282 1.21267 1.20226 1.21137 0.92945 0.91014 1.51046 0.92793 1.19063 0.94011 0.90361 0.97755 1.22192 0.97033 0.88348 0.98699 1.60654 1.19490 1.01612 1.49937 1.20906 0.93665 0.88006 1.00909 1.19968 0.98377 0.96019 0.92997 1.21042 0.98483 0.95505 0.97785 1.20903 0.98077 0.95177 0.97204 1.18922 0.98025 0.92381 0.93028 1.62407 1.04519 1.03512 1.49979 1.23335 0.96148 0.91393 0.97917 1.22495 0.95039 0.97332 1.01318 1.22416 0.99306 0.95018 1.00249 1.23012 0.93013 0.97200 0.95917 1.21534 1.00498 0.97322 0.97752 1.20912 0.97267 0.94560 0.98014 0.92919 0.96790 0.95652 0.92284 0.96583 0.84509 0.90596 0.94892 0.85901 0.85624 0.89870 0.93192 0.90927 0.90612 0.91388 0.90824 0.92836 0.90036 0.86585 0.85863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.39 5.62 -3.82 -0.02 1.37 16 11 N -0.69 -12.54 6.49 -115.06 -0.75 -13.29 16 12 C 0.09 1.40 5.81 -4.98 -0.03 1.37 16 13 C -0.07 -0.99 5.40 -104.58 -0.56 -1.56 16 14 C -0.11 -1.36 9.69 -39.61 -0.38 -1.75 16 15 C -0.09 -1.14 9.97 -39.38 -0.39 -1.53 16 16 C 0.07 0.84 4.86 -83.78 -0.41 0.43 16 17 N -0.48 -5.07 5.28 -167.16 -0.88 -5.95 16 18 C 0.04 0.33 6.43 -1.90 -0.01 0.32 16 19 C -0.12 -0.83 7.06 -24.87 -0.18 -1.01 16 20 C -0.13 -0.93 6.93 -25.37 -0.18 -1.10 16 21 C 0.04 0.33 6.48 -2.76 -0.02 0.31 16 22 C -0.15 -1.80 7.91 -39.38 -0.31 -2.11 16 23 C -0.09 -1.15 9.69 -39.61 -0.38 -1.53 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.34 6.07 8.72 -39.29 -0.34 5.73 16 30 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 31 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.43 7.04 -51.93 -0.37 0.07 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.53 6.29 -51.93 -0.33 0.20 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.12 1.21 7.04 -52.49 -0.37 0.85 16 43 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 LS Contribution 348.46 15.07 5.25 5.25 Total: -1.00 -30.76 348.46 -11.38 -42.13 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.28 Total: 1.54 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -3.43 Total: -20.00 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.89 Total: -45.72 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.76 -11.38 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254573975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.254 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds