Wall clock time and date at job start Mon Mar 30 2020 03:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99448 * 2 1 4 4 H 1.48502 * 109.46882 * 239.99656 * 3 2 1 5 5 H 1.48489 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46889 * 120.00190 * 3 2 1 7 7 C 1.37876 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99934 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47089 * 180.02562 * 9 7 2 11 11 N 1.46897 * 109.47156 * 180.02562 * 10 9 7 12 12 C 1.46896 * 110.99933 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47397 * 179.97438 * 12 11 10 14 14 C 1.38289 * 119.92033 * 89.99781 * 13 12 11 15 15 C 1.38100 * 120.06996 * 180.02562 * 14 13 12 16 16 C 1.38919 * 119.92763 * 0.02562 * 15 14 13 17 17 N 1.39675 * 120.07351 * 179.97438 * 16 15 14 18 18 C 1.48533 * 110.99896 * 116.90242 * 17 16 15 19 19 C 1.54930 * 103.22949 * 159.71854 * 18 17 16 20 20 C 1.54600 * 102.91907 * 322.58575 * 19 18 17 21 21 C 1.47898 * 110.99628 * 234.29526 * 17 16 15 22 22 C 1.38912 * 119.84884 * 0.25058 * 16 15 14 23 23 C 1.38104 * 119.92261 * 359.51667 * 22 16 15 24 24 H 0.96993 * 120.00012 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47301 * 60.00117 * 9 7 2 26 26 H 1.08996 * 109.47253 * 299.99907 * 9 7 2 27 27 H 1.09000 * 109.47045 * 60.00026 * 10 9 7 28 28 H 1.08996 * 109.46752 * 299.99913 * 10 9 7 29 29 H 1.00902 * 111.00023 * 56.04396 * 11 10 9 30 30 H 1.08997 * 109.46918 * 59.99857 * 12 11 10 31 31 H 1.09005 * 109.47226 * 300.00075 * 12 11 10 32 32 H 1.07998 * 119.96703 * 0.02562 * 14 13 12 33 33 H 1.08006 * 120.03876 * 179.97438 * 15 14 13 34 34 H 1.09005 * 110.66495 * 278.15777 * 18 17 16 35 35 H 1.09002 * 110.66858 * 41.27945 * 18 17 16 36 36 H 1.09000 * 110.72569 * 204.23001 * 19 18 17 37 37 H 1.08995 * 110.72507 * 80.94108 * 19 18 17 38 38 H 1.09002 * 110.30609 * 263.03780 * 20 19 18 39 39 H 1.08995 * 110.30628 * 140.87567 * 20 19 18 40 40 H 1.08998 * 109.92060 * 333.51048 * 21 17 16 41 41 H 1.08999 * 109.91792 * 94.61420 * 21 17 16 42 42 H 1.07997 * 120.03468 * 179.74888 * 22 16 15 43 43 H 1.08004 * 119.96458 * 180.22726 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6621 -0.0005 11 7 1.5111 -4.9343 -0.0012 12 6 2.4356 -6.0758 -0.0018 13 6 1.6476 -7.3605 -0.0018 14 6 1.2864 -7.9481 -1.2003 15 6 0.5639 -9.1251 -1.2039 16 6 0.1995 -9.7183 -0.0018 17 7 -0.5317 -10.9083 -0.0019 18 6 0.2433 -12.0093 0.6255 19 6 -0.8499 -13.0369 1.0120 20 6 -2.0233 -12.1388 1.4665 21 6 -1.7644 -10.7729 0.8040 22 6 0.5590 -9.1222 1.2003 23 6 1.2857 -7.9478 1.1967 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8902 26 1 0.6249 -2.5571 0.8896 27 1 2.8721 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8905 29 1 0.8748 -4.9841 -0.7827 30 1 3.0636 -6.0352 0.8882 31 1 3.0635 -6.0343 -0.8918 32 1 1.5697 -7.4863 -2.1346 33 1 0.2818 -9.5834 -2.1403 34 1 0.9433 -12.4426 -0.0889 35 1 0.7679 -11.6537 1.5123 36 1 -0.5105 -13.6716 1.8306 37 1 -1.1362 -13.6383 0.1493 38 1 -2.0247 -12.0386 2.5519 39 1 -2.9713 -12.5524 1.1228 40 1 -1.6258 -10.0093 1.5693 41 1 -2.6017 -10.5049 0.1596 42 1 0.2738 -9.5786 2.1366 43 1 1.5688 -7.4857 2.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254573975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:16 Heat of formation + Delta-G solvation = 3.650890 kcal Electronic energy + Delta-G solvation = -19987.271718 eV Core-core repulsion = 17030.674926 eV Total energy + Delta-G solvation = -2956.596792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22011 -39.13825 -37.27341 -35.14798 -33.68439 -31.92102 -31.66661 -29.83700 -29.48375 -26.63166 -24.93212 -23.81486 -22.85542 -22.44423 -21.80977 -21.20536 -18.52252 -18.26458 -17.25733 -16.96710 -16.45790 -16.18163 -15.81242 -15.54850 -15.26372 -15.04956 -14.54524 -14.36575 -14.28534 -14.04788 -13.86238 -13.43633 -13.08947 -12.97835 -12.88238 -12.80195 -12.48171 -12.28326 -12.18312 -12.10834 -12.02969 -11.88796 -11.46408 -11.41665 -11.28351 -10.56553 -9.87741 -9.66248 -9.48546 -9.23988 -8.20496 -6.32515 0.25186 0.46588 1.40324 1.43861 1.51823 2.40312 2.67771 2.91165 3.12691 3.52538 3.69692 3.85676 3.88859 3.95182 4.03305 4.08247 4.31839 4.34188 4.46479 4.50272 4.55027 4.57963 4.63179 4.69953 4.77281 4.87025 4.88935 4.94869 5.03441 5.05632 5.11668 5.15822 5.26941 5.33051 5.43506 5.51439 5.65884 5.69271 5.77063 5.78643 5.85475 6.11474 6.24895 6.42107 6.48871 6.84775 7.36835 8.91526 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.043050 B = 0.002525 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.249138 B =11085.601030 C =11355.510150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.084 3.916 11 N -0.693 5.693 12 C 0.099 3.901 13 C -0.089 4.089 14 C -0.110 4.110 15 C -0.103 4.103 16 C 0.071 3.929 17 N -0.493 5.493 18 C 0.035 3.965 19 C -0.118 4.118 20 C -0.128 4.128 21 C 0.031 3.969 22 C -0.153 4.153 23 C -0.098 4.098 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.007 1.007 27 H 0.060 0.940 28 H 0.022 0.978 29 H 0.338 0.662 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.129 0.871 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.395 -27.075 1.312 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.324 5.324 12 C -0.029 4.029 13 C -0.089 4.089 14 C -0.129 4.129 15 C -0.122 4.122 16 C -0.023 4.023 17 N -0.215 5.215 18 C -0.091 4.091 19 C -0.155 4.155 20 C -0.166 4.166 21 C -0.096 4.096 22 C -0.173 4.173 23 C -0.117 4.117 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.011 0.989 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.155 0.845 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.147 0.853 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.044 -27.097 1.458 27.136 hybrid contribution 0.579 1.467 -0.085 1.580 sum 0.624 -25.629 1.373 25.674 Atomic orbital electron populations 1.70109 1.07891 1.27905 1.51352 1.26014 0.95790 1.03501 0.94604 0.85447 0.78206 0.77816 0.79245 1.19036 1.20849 1.19104 1.21592 0.93603 0.92178 1.51030 0.91956 1.18918 0.94326 0.92372 0.94975 1.21808 0.95596 0.88063 0.99028 1.60557 1.20153 1.01514 1.50208 1.20893 0.93294 0.87136 1.01561 1.19891 0.99477 0.95839 0.93712 1.21186 0.98209 0.95629 0.97896 1.21094 0.98051 0.95139 0.97876 1.19123 0.97422 0.92782 0.92967 1.62454 1.04965 1.03279 1.50766 1.23416 0.96676 0.91240 0.97786 1.22497 0.94082 0.96925 1.02045 1.22416 0.99925 0.93615 1.00602 1.23066 0.92379 0.98511 0.95623 1.21662 1.00153 0.96996 0.98466 1.21037 0.97576 0.95076 0.98004 0.92726 0.99133 0.98902 0.92102 0.95945 0.84472 0.90239 0.93799 0.84815 0.84527 0.89725 0.93342 0.89207 0.90311 0.90506 0.89845 0.93676 0.90555 0.85342 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.72 5.23 29.85 0.16 1.87 16 10 C 0.08 3.57 5.62 86.31 0.49 4.05 16 11 N -0.69 -25.36 6.49 -517.92 -3.36 -28.72 16 12 C 0.10 2.88 5.81 85.56 0.50 3.37 16 13 C -0.09 -2.36 5.40 -19.84 -0.11 -2.47 16 14 C -0.11 -2.67 9.69 22.25 0.22 -2.45 16 15 C -0.10 -2.38 9.97 22.40 0.22 -2.16 16 16 C 0.07 1.64 4.86 38.22 0.19 1.82 16 17 N -0.49 -9.77 5.28 -682.79 -3.60 -13.38 16 18 C 0.03 0.54 6.43 86.65 0.56 1.10 16 19 C -0.12 -1.32 7.06 31.80 0.22 -1.10 16 20 C -0.13 -1.54 6.93 31.47 0.22 -1.32 16 21 C 0.03 0.54 6.48 86.45 0.56 1.10 16 22 C -0.15 -3.52 7.91 22.40 0.18 -3.35 16 23 C -0.10 -2.49 9.69 22.25 0.22 -2.28 16 24 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.34 12.27 8.72 -89.69 -0.78 11.49 16 30 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 31 H 0.04 1.18 8.09 -2.38 -0.02 1.16 16 32 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.05 0.77 7.04 -2.39 -0.02 0.75 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.04 0.86 6.29 -2.39 -0.02 0.84 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.13 2.56 7.04 -2.91 -0.02 2.54 16 43 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -65.76 348.46 -0.16 -65.92 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.19 Total: 19.78 kcal Atomic # 6 Polarization: -37.02 SS G_CDS: 4.30 Total: -32.71 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -6.68 Total: -99.60 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -65.76 -0.16 -65.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254573975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.566 kcal (2) G-P(sol) polarization free energy of solvation -65.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds