Wall clock time and date at job start Mon Mar 30 2020 01:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47559 * 2 1 4 4 H 1.08999 * 109.47419 * 174.08579 * 3 2 1 5 5 C 1.50704 * 109.47209 * 54.08584 * 3 2 1 6 6 H 1.07999 * 120.00059 * 240.00102 * 5 3 2 7 7 C 1.37876 * 119.99940 * 59.99864 * 5 3 2 8 8 N 1.31515 * 119.99723 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99966 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47134 * 90.00589 * 9 7 5 11 11 H 1.48508 * 109.46960 * 210.00164 * 9 7 5 12 12 H 1.48497 * 109.47393 * 329.99989 * 9 7 5 13 13 N 1.46901 * 109.47210 * 294.09092 * 3 2 1 14 14 C 1.46910 * 110.99738 * 275.78411 * 13 3 2 15 15 C 1.50699 * 109.46959 * 176.19420 * 14 13 3 16 16 N 1.30796 * 126.24574 * 269.94369 * 15 14 13 17 17 N 1.28685 * 110.29190 * 180.02562 * 16 15 14 18 18 C 1.32298 * 109.48001 * 0.02562 * 17 16 15 19 19 C 1.40821 * 133.47110 * 179.97438 * 18 17 16 20 20 C 1.50702 * 120.38216 * 0.04321 * 19 18 17 21 21 C 1.36012 * 119.23460 * 180.02562 * 19 18 17 22 22 C 1.40548 * 119.74535 * 0.02562 * 21 19 18 23 23 C 1.34959 * 120.36838 * 359.97438 * 22 21 19 24 24 N 1.36064 * 126.24727 * 90.00517 * 15 14 13 25 25 H 1.09001 * 109.46411 * 58.55949 * 1 2 3 26 26 H 1.08999 * 109.47056 * 178.55455 * 1 2 3 27 27 H 1.08998 * 109.47184 * 298.56217 * 1 2 3 28 28 H 1.09001 * 109.47482 * 239.99425 * 2 1 3 29 29 H 1.08999 * 109.46844 * 120.00083 * 2 1 3 30 30 H 0.97009 * 119.99715 * 179.97438 * 8 7 5 31 31 H 1.00894 * 111.00231 * 39.73204 * 13 3 2 32 32 H 1.08996 * 109.46748 * 56.19432 * 14 13 3 33 33 H 1.09001 * 109.46859 * 296.19570 * 14 13 3 34 34 H 1.08994 * 109.47441 * 89.99802 * 20 19 18 35 35 H 1.09000 * 109.47198 * 210.00285 * 20 19 18 36 36 H 1.08999 * 109.47503 * 329.99897 * 20 19 18 37 37 H 1.08001 * 120.13025 * 180.02562 * 21 19 18 38 38 H 1.08000 * 119.82219 * 180.02562 * 22 21 19 39 39 H 1.07997 * 119.74840 * 180.28390 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1250 1.4442 0.1059 5 6 1.4219 2.1939 1.1507 6 1 0.8151 3.0670 0.9617 7 6 1.6309 1.7666 2.4449 8 7 2.3702 0.7036 2.6750 9 14 0.8640 2.6977 3.8712 10 1 -0.4780 2.1342 4.1657 11 1 1.7299 2.5667 5.0705 12 1 0.7305 4.1322 3.5114 13 7 1.6704 2.0925 -1.2644 14 6 2.6512 1.7936 -2.3165 15 6 2.1913 2.3979 -3.6182 16 7 1.4383 1.8180 -4.5167 17 7 1.2346 2.6125 -5.5083 18 6 1.8579 3.7589 -5.2905 19 6 1.9728 4.9542 -6.0260 20 6 1.2908 5.0954 -7.3625 21 6 2.7061 5.9800 -5.5162 22 6 3.3366 5.8338 -4.2686 23 6 3.2177 4.6823 -3.5748 24 7 2.4848 3.6460 -4.0738 25 1 -0.3632 0.5361 -0.8768 26 1 -0.3633 -1.0273 -0.0259 27 1 -0.3633 0.4913 0.9026 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.5176 0.4032 3.5856 31 1 0.7406 1.8248 -1.5503 32 1 2.7442 0.7136 -2.4301 33 1 3.6183 2.2148 -2.0419 34 1 0.2879 5.4971 -7.2180 35 1 1.8659 5.7723 -7.9942 36 1 1.2253 4.1187 -7.8419 37 1 2.8035 6.9034 -6.0678 38 1 3.9188 6.6477 -3.8624 39 1 3.7026 4.5825 -2.6150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:44 Heat of formation + Delta-G solvation = 99.700411 kcal Electronic energy + Delta-G solvation = -20849.721997 eV Core-core repulsion = 17793.749881 eV Total energy + Delta-G solvation = -3055.972116 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.39940 -38.29851 -36.73507 -34.85596 -32.90890 -31.63630 -31.10815 -29.45255 -27.32347 -26.75260 -24.73860 -23.59014 -23.27181 -23.00634 -20.55828 -19.36648 -17.88274 -17.30851 -16.46730 -16.32280 -15.63322 -14.89928 -14.82354 -14.41381 -13.95854 -13.54792 -13.12735 -13.04513 -12.90500 -12.50363 -12.39501 -12.28628 -12.06746 -11.88001 -11.71934 -11.44633 -10.96932 -10.82355 -10.70277 -10.55617 -10.39804 -10.06080 -9.92437 -9.58535 -9.44864 -9.06527 -8.40526 -7.94249 -7.40942 -6.03427 -4.05437 0.59953 1.15012 2.40709 2.84128 3.29038 3.29591 3.36168 3.39849 4.07954 4.37149 4.39399 4.54598 4.70878 4.77459 4.85809 5.24143 5.28611 5.36535 5.43851 5.44340 5.48143 5.73436 5.86817 5.90876 5.94736 6.15363 6.16286 6.34618 6.39016 6.39914 6.54686 6.91019 6.95497 7.13431 7.22522 7.48109 7.63934 7.80412 8.16811 8.36344 8.49049 8.68891 8.99296 9.58314 11.03591 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.004335 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.897460 B = 6457.684596 C = 7058.712095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C 0.217 3.783 4 H 0.036 0.964 5 C -0.491 4.491 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.680 5.680 14 C 0.143 3.857 15 C 0.170 3.830 16 N -0.254 5.254 17 N -0.292 5.292 18 C 0.185 3.815 19 C -0.050 4.050 20 C -0.103 4.103 21 C -0.098 4.098 22 C -0.146 4.146 23 C 0.080 3.920 24 N -0.381 5.381 25 H 0.030 0.970 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.014 0.986 29 H 0.094 0.906 30 H 0.260 0.740 31 H 0.336 0.664 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 9.652 -14.440 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.314 5.314 14 C 0.011 3.989 15 C -0.094 4.094 16 N -0.094 5.094 17 N -0.138 5.138 18 C -0.064 4.064 19 C -0.054 4.054 20 C -0.160 4.160 21 C -0.122 4.122 22 C -0.167 4.167 23 C -0.043 4.043 24 N -0.060 5.060 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.032 0.968 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.660 8.884 -14.755 17.427 hybrid contribution 0.171 0.473 1.405 1.492 sum 2.831 9.358 -13.350 16.547 Atomic orbital electron populations 1.21560 0.97522 0.98234 1.01228 1.22111 0.95261 1.00773 1.00455 1.19254 0.96255 0.88961 0.84590 0.94640 1.20990 1.30741 1.11643 0.89582 0.92066 1.24892 0.95465 0.95156 0.98675 1.69882 1.38988 1.24040 1.20456 0.86559 0.79067 0.80289 0.81861 1.20784 1.21375 1.19963 1.61055 1.04149 1.63330 1.02817 1.20312 0.97243 0.97901 0.83434 1.25192 1.01947 0.81815 1.00400 1.74226 1.12589 1.24022 0.98549 1.74881 1.21269 0.98478 1.19159 1.22106 0.99064 0.98159 0.87104 1.18940 0.99778 0.89336 0.97357 1.20654 1.00121 1.03623 0.91631 1.21018 0.96789 0.98644 0.95757 1.20863 1.02996 0.97130 0.95759 1.21778 0.95605 0.86521 1.00380 1.43635 1.33760 1.12318 1.16278 0.95108 0.95705 0.91592 0.96751 0.88777 0.93017 0.84549 0.91942 0.89834 0.90478 0.90855 0.90420 0.83938 0.82865 0.80979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.39 37.16 0.35 -2.43 16 2 C -0.15 -3.37 5.50 -26.73 -0.15 -3.51 16 3 C 0.22 5.12 2.33 -68.87 -0.16 4.96 16 4 H 0.04 0.90 7.86 -51.93 -0.41 0.50 16 5 C -0.49 -12.83 7.35 -34.44 -0.25 -13.08 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.57 5.22 -17.82 -0.09 1.47 16 8 N -0.89 -24.48 11.39 55.43 0.63 -23.84 16 9 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.68 -14.07 6.24 -109.21 -0.68 -14.75 16 14 C 0.14 2.54 6.00 -4.97 -0.03 2.51 16 15 C 0.17 3.02 7.61 -154.23 -1.17 1.85 16 16 N -0.25 -4.96 12.19 32.94 0.40 -4.56 16 17 N -0.29 -5.41 12.31 31.14 0.38 -5.03 16 18 C 0.19 2.94 7.62 -156.07 -1.19 1.75 16 19 C -0.05 -0.59 5.90 -104.44 -0.62 -1.21 16 20 C -0.10 -0.92 10.04 36.01 0.36 -0.56 16 21 C -0.10 -0.89 9.72 -39.51 -0.38 -1.27 16 22 C -0.15 -1.34 9.98 -39.88 -0.40 -1.74 16 23 C 0.08 0.97 10.91 -16.69 -0.18 0.79 16 24 N -0.38 -5.97 2.95 -59.73 -0.18 -6.15 16 25 H 0.03 0.62 6.42 -51.93 -0.33 0.29 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 1.55 7.05 -51.93 -0.37 1.19 16 28 H 0.01 0.30 7.24 -51.93 -0.38 -0.08 16 29 H 0.09 2.41 6.25 -51.93 -0.32 2.09 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.34 7.14 6.55 -39.29 -0.26 6.88 16 32 H 0.06 1.12 7.23 -51.93 -0.38 0.75 16 33 H 0.08 1.36 8.13 -51.93 -0.42 0.93 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 36 H 0.08 0.78 8.10 -51.93 -0.42 0.35 16 37 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -30.44 323.00 -8.87 -39.31 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.36 Total: 4.79 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -3.92 Total: -10.47 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.56 Total: -54.34 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.44 -8.87 -39.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.015 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds