Wall clock time and date at job start Mon Mar 30 2020 01:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47559 * 2 1 4 4 H 1.08999 * 109.47419 * 174.08579 * 3 2 1 5 5 C 1.50704 * 109.47209 * 54.08584 * 3 2 1 6 6 H 1.07999 * 120.00059 * 240.00102 * 5 3 2 7 7 C 1.37876 * 119.99940 * 59.99864 * 5 3 2 8 8 N 1.31515 * 119.99723 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99966 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47134 * 90.00589 * 9 7 5 11 11 H 1.48508 * 109.46960 * 210.00164 * 9 7 5 12 12 H 1.48497 * 109.47393 * 329.99989 * 9 7 5 13 13 N 1.46901 * 109.47210 * 294.09092 * 3 2 1 14 14 C 1.46910 * 110.99738 * 275.78411 * 13 3 2 15 15 C 1.50699 * 109.46959 * 176.19420 * 14 13 3 16 16 N 1.30796 * 126.24574 * 269.94369 * 15 14 13 17 17 N 1.28685 * 110.29190 * 180.02562 * 16 15 14 18 18 C 1.32298 * 109.48001 * 0.02562 * 17 16 15 19 19 C 1.40821 * 133.47110 * 179.97438 * 18 17 16 20 20 C 1.50702 * 120.38216 * 0.04321 * 19 18 17 21 21 C 1.36012 * 119.23460 * 180.02562 * 19 18 17 22 22 C 1.40548 * 119.74535 * 0.02562 * 21 19 18 23 23 C 1.34959 * 120.36838 * 359.97438 * 22 21 19 24 24 N 1.36064 * 126.24727 * 90.00517 * 15 14 13 25 25 H 1.09001 * 109.46411 * 58.55949 * 1 2 3 26 26 H 1.08999 * 109.47056 * 178.55455 * 1 2 3 27 27 H 1.08998 * 109.47184 * 298.56217 * 1 2 3 28 28 H 1.09001 * 109.47482 * 239.99425 * 2 1 3 29 29 H 1.08999 * 109.46844 * 120.00083 * 2 1 3 30 30 H 0.97009 * 119.99715 * 179.97438 * 8 7 5 31 31 H 1.00894 * 111.00231 * 39.73204 * 13 3 2 32 32 H 1.08996 * 109.46748 * 56.19432 * 14 13 3 33 33 H 1.09001 * 109.46859 * 296.19570 * 14 13 3 34 34 H 1.08994 * 109.47441 * 89.99802 * 20 19 18 35 35 H 1.09000 * 109.47198 * 210.00285 * 20 19 18 36 36 H 1.08999 * 109.47503 * 329.99897 * 20 19 18 37 37 H 1.08001 * 120.13025 * 180.02562 * 21 19 18 38 38 H 1.08000 * 119.82219 * 180.02562 * 22 21 19 39 39 H 1.07997 * 119.74840 * 180.28390 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1250 1.4442 0.1059 5 6 1.4219 2.1939 1.1507 6 1 0.8151 3.0670 0.9617 7 6 1.6309 1.7666 2.4449 8 7 2.3702 0.7036 2.6750 9 14 0.8640 2.6977 3.8712 10 1 -0.4780 2.1342 4.1657 11 1 1.7299 2.5667 5.0705 12 1 0.7305 4.1322 3.5114 13 7 1.6704 2.0925 -1.2644 14 6 2.6512 1.7936 -2.3165 15 6 2.1913 2.3979 -3.6182 16 7 1.4383 1.8180 -4.5167 17 7 1.2346 2.6125 -5.5083 18 6 1.8579 3.7589 -5.2905 19 6 1.9728 4.9542 -6.0260 20 6 1.2908 5.0954 -7.3625 21 6 2.7061 5.9800 -5.5162 22 6 3.3366 5.8338 -4.2686 23 6 3.2177 4.6823 -3.5748 24 7 2.4848 3.6460 -4.0738 25 1 -0.3632 0.5361 -0.8768 26 1 -0.3633 -1.0273 -0.0259 27 1 -0.3633 0.4913 0.9026 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.5176 0.4032 3.5856 31 1 0.7406 1.8248 -1.5503 32 1 2.7442 0.7136 -2.4301 33 1 3.6183 2.2148 -2.0419 34 1 0.2879 5.4971 -7.2180 35 1 1.8659 5.7723 -7.9942 36 1 1.2253 4.1187 -7.8419 37 1 2.8035 6.9034 -6.0678 38 1 3.9188 6.6477 -3.8624 39 1 3.7026 4.5825 -2.6150 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150734.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:39 Heat of formation + Delta-G solvation = 81.841587 kcal Electronic energy + Delta-G solvation = -20850.496414 eV Core-core repulsion = 17793.749881 eV Total energy + Delta-G solvation = -3056.746532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -44.56001 -39.29409 -38.46964 -35.93664 -34.62973 -32.85647 -32.58282 -30.87276 -28.55137 -28.11174 -26.36997 -25.09718 -24.62869 -24.05958 -21.75896 -21.19177 -19.00510 -18.41608 -18.03596 -17.67801 -16.88865 -16.60762 -16.22813 -15.59555 -15.32473 -14.78861 -14.68643 -14.31486 -14.18754 -13.89317 -13.63692 -13.50325 -13.48954 -13.04642 -12.83775 -12.79433 -12.60384 -12.47569 -12.46851 -11.95099 -11.86900 -11.62803 -11.57851 -11.43461 -11.01936 -10.57743 -10.43989 -9.17969 -8.91457 -8.06218 -6.14370 -0.29490 0.11266 1.31978 1.43436 1.45803 1.54477 1.60506 2.35466 2.45833 3.00041 3.23390 3.39178 3.46229 3.66879 3.80924 3.93887 3.97926 4.25606 4.44264 4.52565 4.56551 4.62915 4.70249 4.72826 4.78548 4.82373 4.95977 5.04590 5.09842 5.22059 5.26333 5.28980 5.38570 5.56216 5.63787 5.72093 5.77920 5.92223 6.25691 6.54831 6.61835 6.94396 7.44341 7.52761 8.99312 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.004335 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.897460 B = 6457.684596 C = 7058.712095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.141 4.141 3 C 0.224 3.776 4 H 0.014 0.986 5 C -0.500 4.500 6 H 0.050 0.950 7 C 0.019 3.981 8 N -0.917 5.917 9 Si 0.950 3.050 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.678 5.678 14 C 0.153 3.847 15 C 0.149 3.851 16 N -0.285 5.285 17 N -0.336 5.336 18 C 0.181 3.819 19 C -0.077 4.077 20 C -0.099 4.099 21 C -0.071 4.071 22 C -0.119 4.119 23 C 0.041 3.959 24 N -0.382 5.382 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.260 0.740 31 H 0.331 0.669 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.192 0.808 38 H 0.199 0.801 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 12.723 -15.357 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.180 4.180 3 C 0.116 3.884 4 H 0.032 0.968 5 C -0.539 4.539 6 H 0.068 0.932 7 C -0.180 4.180 8 N -0.557 5.557 9 Si 0.777 3.223 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.311 5.311 14 C 0.022 3.978 15 C -0.116 4.116 16 N -0.125 5.125 17 N -0.182 5.182 18 C -0.068 4.068 19 C -0.081 4.081 20 C -0.156 4.156 21 C -0.095 4.095 22 C -0.140 4.140 23 C -0.081 4.081 24 N -0.060 5.060 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.209 0.791 38 H 0.216 0.784 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.227 11.969 -15.683 19.991 hybrid contribution 0.084 -0.293 1.593 1.622 sum 3.311 11.676 -14.091 18.597 Atomic orbital electron populations 1.21448 0.96433 0.99277 1.00502 1.21984 0.96170 1.00177 0.99686 1.19008 0.94644 0.89307 0.85460 0.96796 1.21167 1.30583 1.11454 0.90691 0.93154 1.25523 0.95868 0.95854 1.00763 1.69997 1.39898 1.25064 1.20785 0.85677 0.78227 0.79234 0.79193 1.20622 1.21075 1.19607 1.60923 1.04485 1.62944 1.02724 1.20175 0.96890 0.97789 0.82949 1.24850 1.03272 0.83176 1.00279 1.74074 1.13605 1.25439 0.99416 1.74750 1.23791 0.99965 1.19721 1.22782 0.98025 0.98653 0.87387 1.19468 1.01516 0.88571 0.98541 1.20700 1.00818 1.03462 0.90613 1.21661 0.93448 0.99146 0.95229 1.21527 1.00928 0.96559 0.94945 1.22337 0.96908 0.87007 1.01859 1.43714 1.33871 1.12240 1.16204 0.94199 0.93879 0.93709 0.95510 0.91394 0.93089 0.85029 0.92515 0.88563 0.90017 0.87318 0.92400 0.79054 0.78421 0.80240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 9.39 71.98 0.68 -4.51 16 2 C -0.14 -6.58 5.50 30.59 0.17 -6.41 16 3 C 0.22 10.81 2.33 44.17 0.10 10.91 16 4 H 0.01 0.74 7.86 -2.39 -0.02 0.72 16 5 C -0.50 -26.48 7.35 25.60 0.19 -26.29 16 6 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 7 C 0.02 0.99 5.22 84.65 0.44 1.44 16 8 N -0.92 -50.88 11.39 21.45 0.24 -50.63 16 9 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 N -0.68 -28.61 6.24 -499.45 -3.12 -31.73 16 14 C 0.15 5.61 6.00 85.55 0.51 6.12 16 15 C 0.15 5.44 7.61 137.71 1.05 6.49 16 16 N -0.29 -11.64 12.19 -49.69 -0.61 -12.25 16 17 N -0.34 -12.92 12.31 -55.40 -0.68 -13.60 16 18 C 0.18 5.70 7.62 134.07 1.02 6.72 16 19 C -0.08 -1.61 5.90 -19.75 -0.12 -1.73 16 20 C -0.10 -1.52 10.04 71.24 0.71 -0.80 16 21 C -0.07 -0.93 9.72 22.32 0.22 -0.71 16 22 C -0.12 -1.64 9.98 22.08 0.22 -1.42 16 23 C 0.04 0.91 10.91 83.23 0.91 1.81 16 24 N -0.38 -11.88 2.95 -342.89 -1.01 -12.89 16 25 H 0.04 1.63 6.42 -2.39 -0.02 1.62 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 2.12 7.05 -2.39 -0.02 2.10 16 28 H 0.03 1.15 7.24 -2.39 -0.02 1.14 16 29 H 0.07 3.56 6.25 -2.39 -0.01 3.54 16 30 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 31 H 0.33 14.41 6.55 -89.70 -0.59 13.82 16 32 H 0.06 2.12 7.23 -2.39 -0.02 2.10 16 33 H 0.10 3.19 8.13 -2.39 -0.02 3.17 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 0.86 8.09 -2.39 -0.02 0.84 16 36 H 0.06 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.19 0.72 8.06 -2.91 -0.02 0.69 16 38 H 0.20 1.01 8.06 -2.91 -0.02 0.98 16 39 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -69.09 323.00 3.43 -65.66 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.47 Total: 18.96 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 6.10 Total: -8.39 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -5.17 Total: -121.10 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -69.09 3.43 -65.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150734.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.501 kcal (2) G-P(sol) polarization free energy of solvation -69.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds