Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47187 * 2 1 4 4 H 1.09002 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47104 * 300.07818 * 3 2 1 6 6 H 1.08000 * 120.00456 * 119.99858 * 5 3 2 7 7 C 1.37875 * 120.00316 * 299.99848 * 5 3 2 8 8 N 1.31521 * 119.99770 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00424 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46977 * 59.99911 * 9 7 5 11 11 H 1.48502 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46870 * 299.99961 * 9 7 5 13 13 N 1.46905 * 109.46891 * 60.07604 * 3 2 1 14 14 C 1.46903 * 110.99532 * 85.94472 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.53419 * 14 13 3 16 16 N 1.30805 * 126.24272 * 269.68422 * 15 14 13 17 17 N 1.28680 * 110.28883 * 179.88079 * 16 15 14 18 18 C 1.32304 * 109.48620 * 0.39490 * 17 16 15 19 19 C 1.40816 * 133.47215 * 179.76587 * 18 17 16 20 20 C 1.50701 * 120.38777 * 359.97438 * 19 18 17 21 21 C 1.36024 * 119.22657 * 179.97438 * 19 18 17 22 22 C 1.40543 * 119.74773 * 359.97438 * 21 19 18 23 23 C 1.34956 * 120.36623 * 359.97438 * 22 21 19 24 24 N 1.36059 * 126.25194 * 89.99957 * 15 14 13 25 25 H 1.08998 * 109.47479 * 55.60200 * 1 2 3 26 26 H 1.09006 * 109.46884 * 295.59983 * 1 2 3 27 27 H 1.08993 * 109.46923 * 175.60188 * 1 2 3 28 28 H 1.09002 * 109.47819 * 120.00158 * 2 1 3 29 29 H 1.09001 * 109.47370 * 240.00250 * 2 1 3 30 30 H 0.96994 * 120.00368 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99850 * 209.89215 * 13 3 2 32 32 H 1.08994 * 109.46864 * 295.52584 * 14 13 3 33 33 H 1.08994 * 109.47486 * 55.53271 * 14 13 3 34 34 H 1.08996 * 109.46911 * 270.01951 * 20 19 18 35 35 H 1.08994 * 109.47013 * 30.02098 * 20 19 18 36 36 H 1.09001 * 109.46784 * 150.02428 * 20 19 18 37 37 H 1.07996 * 120.12859 * 180.02562 * 21 19 18 38 38 H 1.08009 * 119.81763 * 180.02562 * 22 21 19 39 39 H 1.08004 * 119.74843 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 -0.0005 5 6 1.5361 2.1535 -1.2294 6 1 0.9153 3.0315 -1.1292 7 6 1.8675 1.6831 -2.4824 8 7 2.6231 0.6135 -2.6045 9 14 1.2435 2.5648 -4.0064 10 1 1.7391 3.9647 -4.0062 11 1 1.7374 1.8656 -5.2199 12 1 -0.2414 2.5653 -4.0047 13 7 1.5518 2.1345 1.2004 14 6 2.4491 1.9063 2.3410 15 6 1.9779 2.7171 3.5207 16 7 2.3440 3.9377 3.8159 17 7 1.7515 4.3346 4.8870 18 6 0.9703 3.3690 5.3428 19 6 0.1158 3.2586 6.4566 20 6 -0.0365 4.4095 7.4176 21 6 -0.5705 2.1011 6.6551 22 6 -0.4188 1.0365 5.7502 23 6 0.4030 1.1571 4.6865 24 7 1.0987 2.3111 4.4764 25 1 -0.3634 0.5805 -0.8479 26 1 -0.3633 0.4441 0.9268 27 1 -0.3633 -1.0246 -0.0788 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.8567 0.2827 -3.4859 31 1 1.4327 3.1211 1.0258 32 1 2.4431 0.8481 2.6019 33 1 3.4613 2.2088 2.0732 34 1 0.7061 4.3214 8.2105 35 1 0.1101 5.3492 6.8852 36 1 -1.0360 4.3901 7.8521 37 1 -1.2301 2.0008 7.5043 38 1 -0.9636 0.1171 5.9065 39 1 0.5124 0.3325 3.9976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255150735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = 98.434712 kcal Electronic energy + Delta-G solvation = -20900.788716 eV Core-core repulsion = 17844.761715 eV Total energy + Delta-G solvation = -3056.027001 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.40330 -38.30432 -36.53747 -34.84154 -32.94972 -31.64684 -31.11734 -29.58607 -27.33137 -26.82011 -24.64448 -23.59864 -23.21472 -23.01311 -20.56179 -19.14574 -17.89852 -17.33159 -16.54985 -16.42034 -15.65284 -15.00364 -14.54858 -14.26552 -13.94935 -13.75730 -13.35790 -13.03320 -12.89969 -12.45174 -12.40903 -12.18042 -12.05765 -11.83336 -11.55572 -11.44224 -10.97648 -10.89462 -10.71577 -10.49218 -10.38977 -10.15085 -9.85168 -9.53854 -9.44370 -8.88925 -8.52686 -7.94357 -7.44786 -6.07402 -4.13033 0.58600 1.14211 2.39879 2.83986 3.28765 3.29631 3.33992 3.37365 4.07194 4.35708 4.37185 4.53408 4.68804 4.76686 4.84996 5.22654 5.24923 5.36413 5.42960 5.44624 5.46985 5.72869 5.86377 5.90131 5.96630 6.15252 6.16108 6.38134 6.42155 6.54770 6.73434 6.94513 7.08303 7.14044 7.36695 7.63301 7.69331 7.75220 8.12719 8.24101 8.50813 8.69170 8.93357 9.51980 10.98570 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.004209 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.840349 B = 6650.239720 C = 7045.757668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.006 0.994 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.681 5.681 14 C 0.145 3.855 15 C 0.170 3.830 16 N -0.253 5.253 17 N -0.292 5.292 18 C 0.185 3.815 19 C -0.049 4.049 20 C -0.103 4.103 21 C -0.098 4.098 22 C -0.146 4.146 23 C 0.079 3.921 24 N -0.381 5.381 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.014 0.986 28 H 0.008 0.992 29 H 0.090 0.910 30 H 0.262 0.738 31 H 0.340 0.660 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.143 0.857 38 H 0.153 0.847 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 -1.335 17.854 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.024 0.976 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.314 5.314 14 C 0.013 3.987 15 C -0.093 4.093 16 N -0.092 5.092 17 N -0.137 5.137 18 C -0.065 4.065 19 C -0.053 4.053 20 C -0.160 4.160 21 C -0.123 4.123 22 C -0.167 4.167 23 C -0.043 4.043 24 N -0.060 5.060 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.027 0.973 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.158 0.842 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.537 -0.532 17.638 18.495 hybrid contribution -0.255 -0.376 -1.103 1.193 sum -5.792 -0.908 16.536 17.544 Atomic orbital electron populations 1.21452 0.97474 0.97496 1.01286 1.21465 0.95028 0.98102 0.99586 1.19201 0.93384 0.91393 0.85054 0.97606 1.21095 1.31965 1.12079 0.90153 0.92267 1.24860 0.94926 0.94967 0.98909 1.69858 1.36542 1.22683 1.23640 0.86607 0.79239 0.79770 0.82114 1.20256 1.21289 1.20217 1.60895 1.47523 1.17059 1.05947 1.20332 0.95873 0.96519 0.85985 1.25207 0.94637 0.94529 0.94925 1.74244 1.19347 1.07568 1.08084 1.74889 1.09975 1.21996 1.06860 1.22110 1.02610 0.86299 0.95464 1.18946 0.95412 0.97539 0.93405 1.20657 1.02349 0.95802 0.97240 1.21014 0.99529 0.91950 0.99795 1.20855 1.00309 1.00962 0.94612 1.21739 0.94286 0.88737 0.99580 1.43638 1.29960 1.12730 1.19691 0.92312 0.94324 0.96648 0.97279 0.89203 0.92800 0.84247 0.89997 0.91889 0.90555 0.90349 0.90816 0.83945 0.82908 0.81152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.52 37.16 0.35 -2.17 16 2 C -0.10 -2.34 5.59 -26.73 -0.15 -2.49 16 3 C 0.22 5.15 2.31 -68.86 -0.16 4.99 16 4 H 0.01 0.16 7.71 -51.93 -0.40 -0.24 16 5 C -0.51 -13.49 7.25 -34.44 -0.25 -13.74 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.68 -13.94 5.65 -109.22 -0.62 -14.56 16 14 C 0.14 2.57 6.06 -4.97 -0.03 2.54 16 15 C 0.17 3.01 7.60 -154.22 -1.17 1.84 16 16 N -0.25 -4.96 12.19 32.94 0.40 -4.56 16 17 N -0.29 -5.41 12.31 31.14 0.38 -5.03 16 18 C 0.18 2.92 7.62 -156.06 -1.19 1.73 16 19 C -0.05 -0.57 5.90 -104.44 -0.62 -1.19 16 20 C -0.10 -0.91 10.04 36.01 0.36 -0.55 16 21 C -0.10 -0.88 9.72 -39.51 -0.38 -1.26 16 22 C -0.15 -1.31 9.98 -39.88 -0.40 -1.71 16 23 C 0.08 0.94 10.91 -16.69 -0.18 0.76 16 24 N -0.38 -5.90 2.95 -59.73 -0.18 -6.08 16 25 H 0.06 1.37 7.06 -51.93 -0.37 1.00 16 26 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.01 0.18 7.60 -51.93 -0.39 -0.22 16 29 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 30 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.34 7.33 8.13 -39.29 -0.32 7.01 16 32 H 0.08 1.33 7.61 -51.93 -0.39 0.93 16 33 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 39 H 0.17 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -30.39 325.50 -8.90 -39.29 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.49 Total: 3.53 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -3.91 Total: -9.61 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.62 Total: -54.04 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.39 -8.90 -39.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.723 kcal (2) G-P(sol) polarization free energy of solvation -30.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds