Wall clock time and date at job start Mon Mar 30 2020 01:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47187 * 2 1 4 4 H 1.09002 * 109.46978 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47104 * 300.07818 * 3 2 1 6 6 H 1.08000 * 120.00456 * 119.99858 * 5 3 2 7 7 C 1.37875 * 120.00316 * 299.99848 * 5 3 2 8 8 N 1.31521 * 119.99770 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00424 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46977 * 59.99911 * 9 7 5 11 11 H 1.48502 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46870 * 299.99961 * 9 7 5 13 13 N 1.46905 * 109.46891 * 60.07604 * 3 2 1 14 14 C 1.46903 * 110.99532 * 85.94472 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.53419 * 14 13 3 16 16 N 1.30805 * 126.24272 * 269.68422 * 15 14 13 17 17 N 1.28680 * 110.28883 * 179.88079 * 16 15 14 18 18 C 1.32304 * 109.48620 * 0.39490 * 17 16 15 19 19 C 1.40816 * 133.47215 * 179.76587 * 18 17 16 20 20 C 1.50701 * 120.38777 * 359.97438 * 19 18 17 21 21 C 1.36024 * 119.22657 * 179.97438 * 19 18 17 22 22 C 1.40543 * 119.74773 * 359.97438 * 21 19 18 23 23 C 1.34956 * 120.36623 * 359.97438 * 22 21 19 24 24 N 1.36059 * 126.25194 * 89.99957 * 15 14 13 25 25 H 1.08998 * 109.47479 * 55.60200 * 1 2 3 26 26 H 1.09006 * 109.46884 * 295.59983 * 1 2 3 27 27 H 1.08993 * 109.46923 * 175.60188 * 1 2 3 28 28 H 1.09002 * 109.47819 * 120.00158 * 2 1 3 29 29 H 1.09001 * 109.47370 * 240.00250 * 2 1 3 30 30 H 0.96994 * 120.00368 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99850 * 209.89215 * 13 3 2 32 32 H 1.08994 * 109.46864 * 295.52584 * 14 13 3 33 33 H 1.08994 * 109.47486 * 55.53271 * 14 13 3 34 34 H 1.08996 * 109.46911 * 270.01951 * 20 19 18 35 35 H 1.08994 * 109.47013 * 30.02098 * 20 19 18 36 36 H 1.09001 * 109.46784 * 150.02428 * 20 19 18 37 37 H 1.07996 * 120.12859 * 180.02562 * 21 19 18 38 38 H 1.08009 * 119.81763 * 180.02562 * 22 21 19 39 39 H 1.08004 * 119.74843 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 -0.0005 5 6 1.5361 2.1535 -1.2294 6 1 0.9153 3.0315 -1.1292 7 6 1.8675 1.6831 -2.4824 8 7 2.6231 0.6135 -2.6045 9 14 1.2435 2.5648 -4.0064 10 1 1.7391 3.9647 -4.0062 11 1 1.7374 1.8656 -5.2199 12 1 -0.2414 2.5653 -4.0047 13 7 1.5518 2.1345 1.2004 14 6 2.4491 1.9063 2.3410 15 6 1.9779 2.7171 3.5207 16 7 2.3440 3.9377 3.8159 17 7 1.7515 4.3346 4.8870 18 6 0.9703 3.3690 5.3428 19 6 0.1158 3.2586 6.4566 20 6 -0.0365 4.4095 7.4176 21 6 -0.5705 2.1011 6.6551 22 6 -0.4188 1.0365 5.7502 23 6 0.4030 1.1571 4.6865 24 7 1.0987 2.3111 4.4764 25 1 -0.3634 0.5805 -0.8479 26 1 -0.3633 0.4441 0.9268 27 1 -0.3633 -1.0246 -0.0788 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.8567 0.2827 -3.4859 31 1 1.4327 3.1211 1.0258 32 1 2.4431 0.8481 2.6019 33 1 3.4613 2.2088 2.0732 34 1 0.7061 4.3214 8.2105 35 1 0.1101 5.3492 6.8852 36 1 -1.0360 4.3901 7.8521 37 1 -1.2301 2.0008 7.5043 38 1 -0.9636 0.1171 5.9065 39 1 0.5124 0.3325 3.9976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255150735.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:50 Heat of formation + Delta-G solvation = 80.583977 kcal Electronic energy + Delta-G solvation = -20901.562782 eV Core-core repulsion = 17844.761715 eV Total energy + Delta-G solvation = -3056.801066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.55582 -39.28063 -38.26672 -35.92477 -34.65778 -32.89128 -32.57599 -30.97679 -28.57535 -28.11301 -26.30073 -25.00807 -24.62049 -24.05528 -21.74773 -20.95906 -19.03780 -18.52471 -18.10429 -17.64287 -16.95917 -16.48369 -15.99723 -15.64559 -15.29590 -15.18220 -14.66046 -14.24713 -14.10404 -13.70015 -13.63487 -13.49248 -13.41345 -12.99176 -12.80844 -12.80407 -12.70085 -12.46284 -12.43166 -12.06408 -11.69388 -11.61986 -11.57688 -11.32668 -10.84333 -10.58830 -10.53174 -9.23489 -8.91875 -8.11638 -6.23203 -0.28652 0.11916 1.32165 1.42257 1.42632 1.50009 1.60872 2.36235 2.41714 3.00294 3.17492 3.39195 3.46377 3.66247 3.81114 3.94436 3.98373 4.26127 4.46674 4.60846 4.63994 4.71696 4.77946 4.79414 4.82211 4.94892 4.96440 5.05129 5.22453 5.27349 5.28518 5.34418 5.53404 5.57023 5.68168 5.80545 5.87136 5.93090 6.25479 6.35030 6.62658 6.91982 7.44813 7.45400 8.92946 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.004209 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.840349 B = 6650.239720 C = 7045.757668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C 0.222 3.778 4 H -0.026 1.026 5 C -0.527 4.527 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.671 5.671 14 C 0.156 3.844 15 C 0.150 3.850 16 N -0.289 5.289 17 N -0.338 5.338 18 C 0.182 3.818 19 C -0.078 4.078 20 C -0.099 4.099 21 C -0.070 4.070 22 C -0.119 4.119 23 C 0.042 3.958 24 N -0.381 5.381 25 H 0.030 0.970 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.030 0.970 29 H 0.061 0.939 30 H 0.262 0.738 31 H 0.330 0.670 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.192 0.808 38 H 0.200 0.800 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.684 -2.874 20.143 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.136 4.136 3 C 0.114 3.886 4 H -0.009 1.009 5 C -0.566 4.566 6 H 0.069 0.931 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.302 5.302 14 C 0.024 3.976 15 C -0.114 4.114 16 N -0.129 5.129 17 N -0.184 5.184 18 C -0.068 4.068 19 C -0.082 4.082 20 C -0.156 4.156 21 C -0.094 4.094 22 C -0.140 4.140 23 C -0.080 4.080 24 N -0.059 5.059 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.209 0.791 38 H 0.217 0.783 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -8.177 -2.078 19.945 21.656 hybrid contribution 0.456 0.016 -1.622 1.685 sum -7.720 -2.062 18.323 19.990 Atomic orbital electron populations 1.21306 0.95964 0.98518 1.00677 1.21319 0.96240 0.96874 0.99180 1.19015 0.91375 0.92459 0.85714 1.00883 1.21347 1.31762 1.11997 0.91463 0.93092 1.25520 0.95162 0.95612 1.01372 1.69977 1.37370 1.23667 1.24070 0.85729 0.78825 0.78621 0.79162 1.20267 1.20822 1.19738 1.60829 1.47888 1.16045 1.05447 1.20189 0.94616 0.97560 0.85223 1.24821 0.96413 0.94408 0.95791 1.74090 1.20704 1.08878 1.09190 1.74754 1.12277 1.23815 1.07573 1.22781 1.02168 0.85647 0.96219 1.19462 0.95811 0.99905 0.93007 1.20698 1.04572 0.93738 0.96613 1.21664 0.97554 0.90075 1.00124 1.21533 0.97797 1.02344 0.92296 1.22353 0.95674 0.88173 1.01773 1.43703 1.29608 1.13740 1.18862 0.95036 0.93036 0.94390 0.95097 0.92102 0.92856 0.85334 0.88172 0.93198 0.89708 0.92679 0.87471 0.79093 0.78307 0.80014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 9.52 71.98 0.69 -3.71 16 2 C -0.10 -4.41 5.59 30.59 0.17 -4.24 16 3 C 0.22 10.83 2.31 44.17 0.10 10.93 16 4 H -0.03 -1.44 7.71 -2.39 -0.02 -1.45 16 5 C -0.53 -28.32 7.25 25.60 0.19 -28.13 16 6 H 0.05 2.76 7.60 -2.91 -0.02 2.74 16 7 C 0.02 1.25 5.30 84.65 0.45 1.70 16 8 N -0.91 -51.09 11.32 21.45 0.24 -50.85 16 9 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 13 N -0.67 -28.09 5.65 -499.45 -2.82 -30.91 16 14 C 0.16 5.69 6.06 85.56 0.52 6.20 16 15 C 0.15 5.48 7.60 137.71 1.05 6.53 16 16 N -0.29 -11.98 12.19 -49.68 -0.61 -12.58 16 17 N -0.34 -13.12 12.31 -55.40 -0.68 -13.80 16 18 C 0.18 5.68 7.62 134.07 1.02 6.70 16 19 C -0.08 -1.61 5.90 -19.75 -0.12 -1.72 16 20 C -0.10 -1.52 10.04 71.24 0.71 -0.81 16 21 C -0.07 -0.87 9.72 22.32 0.22 -0.66 16 22 C -0.12 -1.51 9.98 22.08 0.22 -1.29 16 23 C 0.04 0.88 10.91 83.23 0.91 1.79 16 24 N -0.38 -11.57 2.95 -342.88 -1.01 -12.58 16 25 H 0.03 1.44 7.06 -2.39 -0.02 1.42 16 26 H 0.05 1.95 7.75 -2.38 -0.02 1.93 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.03 1.23 7.60 -2.39 -0.02 1.21 16 29 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 30 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.33 14.87 8.13 -89.69 -0.73 14.14 16 32 H 0.10 3.22 7.61 -2.39 -0.02 3.20 16 33 H 0.05 1.94 7.94 -2.39 -0.02 1.92 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.10 8.10 -2.39 -0.02 1.09 16 36 H 0.11 0.89 8.09 -2.39 -0.02 0.87 16 37 H 0.19 0.61 8.06 -2.91 -0.02 0.58 16 38 H 0.20 0.75 8.06 -2.91 -0.02 0.73 16 39 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -70.33 325.50 3.60 -66.73 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.33 Total: 15.24 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 6.12 Total: -6.70 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -4.88 Total: -120.73 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -70.33 3.60 -66.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255150735.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.313 kcal (2) G-P(sol) polarization free energy of solvation -70.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds