Wall clock time and date at job start Mon Mar 30 2020 01:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 H 1.09004 * 109.47068 * 174.09447 * 3 2 1 5 5 C 1.50697 * 109.47215 * 54.09119 * 3 2 1 6 6 H 1.08004 * 120.00291 * 240.00140 * 5 3 2 7 7 C 1.37874 * 119.99864 * 60.00175 * 5 3 2 8 8 N 1.31520 * 120.00088 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00306 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46948 * 59.99887 * 9 7 5 11 11 H 1.48497 * 109.47535 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47286 * 300.00220 * 9 7 5 13 13 N 1.46907 * 109.46852 * 294.09208 * 3 2 1 14 14 C 1.46894 * 111.00067 * 275.79805 * 13 3 2 15 15 C 1.53000 * 109.47462 * 176.18004 * 14 13 3 16 16 N 1.46490 * 109.47335 * 180.02562 * 15 14 13 17 17 N 1.40285 * 126.76001 * 269.68611 * 16 15 14 18 18 N 1.28648 * 109.43122 * 179.81240 * 17 16 15 19 19 C 1.34790 * 110.31606 * 0.46189 * 18 17 16 20 20 C 1.40130 * 133.15632 * 179.70850 * 19 18 17 21 21 C 1.36413 * 119.80064 * 179.97438 * 20 19 18 22 22 C 1.38901 * 120.74885 * 0.02562 * 21 20 19 23 23 C 1.36661 * 120.58495 * 0.02598 * 22 21 20 24 24 C 1.37463 * 126.75647 * 90.00423 * 16 15 14 25 25 H 1.09001 * 109.47219 * 178.55428 * 1 2 3 26 26 H 1.08998 * 109.46628 * 298.55155 * 1 2 3 27 27 H 1.08998 * 109.47028 * 58.55177 * 1 2 3 28 28 H 1.09001 * 109.46593 * 240.00048 * 2 1 3 29 29 H 1.08993 * 109.46961 * 120.00282 * 2 1 3 30 30 H 0.97001 * 119.99737 * 180.02562 * 8 7 5 31 31 H 1.00893 * 110.99928 * 39.75890 * 13 3 2 32 32 H 1.09004 * 109.47395 * 56.18067 * 14 13 3 33 33 H 1.09005 * 109.47611 * 296.18076 * 14 13 3 34 34 H 1.08997 * 109.47020 * 300.00521 * 15 14 13 35 35 H 1.09004 * 109.46764 * 59.99677 * 15 14 13 36 36 H 1.08007 * 120.09983 * 0.02633 * 20 19 18 37 37 H 1.08000 * 119.62096 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.70712 * 179.97438 * 22 21 20 39 39 H 1.08008 * 120.09817 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1057 5 6 1.4219 2.1939 1.1508 6 1 0.8149 3.0670 0.9618 7 6 1.6311 1.7666 2.4448 8 7 2.3698 0.7031 2.6749 9 14 0.8655 2.6983 3.8714 10 1 -0.6126 2.6964 3.7275 11 1 1.2387 2.0408 5.1495 12 1 1.3609 4.0982 3.8713 13 7 1.6702 2.0926 -1.2644 14 6 2.6506 1.7935 -2.3166 15 6 2.1835 2.4067 -3.6383 16 7 3.1609 2.1079 -4.6877 17 7 4.2699 2.8875 -5.0486 18 7 4.9045 2.3109 -6.0077 19 6 4.2900 1.1614 -6.3510 20 6 4.5603 0.1807 -7.3148 21 6 3.7374 -0.9011 -7.4305 22 6 2.6310 -1.0436 -6.6029 23 6 2.3450 -0.1007 -5.6559 24 6 3.1686 1.0113 -5.5166 25 1 -0.3634 -1.0273 -0.0259 26 1 -0.3632 0.4912 0.9027 27 1 -0.3633 0.5362 -0.8767 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.5166 0.4023 3.5854 31 1 0.7402 1.8251 -1.5500 32 1 2.7438 0.7134 -2.4301 33 1 3.6179 2.2148 -2.0425 34 1 1.2163 1.9854 -3.9124 35 1 2.0903 3.4868 -3.5248 36 1 5.4180 0.2807 -7.9635 37 1 3.9483 -1.6550 -8.1746 38 1 1.9905 -1.9067 -6.7094 39 1 1.4828 -0.2196 -5.0163 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:55 Heat of formation + Delta-G solvation = 108.746525 kcal Electronic energy + Delta-G solvation = -20551.734255 eV Core-core repulsion = 17496.154408 eV Total energy + Delta-G solvation = -3055.579847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.09855 -37.76833 -37.04927 -34.97462 -32.66510 -31.19723 -30.47851 -30.15580 -28.11319 -25.98507 -24.07453 -23.42096 -22.86088 -22.54335 -20.75779 -19.44578 -17.93505 -17.26961 -16.34770 -15.73597 -15.70209 -15.11164 -14.90703 -14.53885 -14.33966 -13.83495 -13.40875 -12.82293 -12.73678 -12.44389 -12.35641 -12.30234 -12.08730 -11.84320 -11.79654 -11.31308 -11.00544 -10.87387 -10.75728 -10.63398 -10.57241 -10.06963 -9.89480 -9.66593 -9.10274 -8.95693 -8.43852 -8.40704 -7.45158 -6.03988 -4.06366 0.39660 1.20428 2.07170 2.18381 3.30585 3.35509 3.38382 3.51190 3.99117 4.38762 4.42139 4.55365 4.64902 4.94095 4.99605 5.04589 5.15861 5.27973 5.30848 5.42258 5.44033 5.70623 5.94372 5.97512 6.13178 6.16527 6.19565 6.24037 6.26101 6.46438 6.47533 6.64246 6.77395 7.13313 7.15428 7.40280 7.57751 7.78901 8.01495 8.15697 8.34783 8.47686 8.98259 9.57502 11.03198 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.003709 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.933613 B = 7546.413234 C = 8015.931025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.218 3.782 4 H 0.034 0.966 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.046 3.954 15 C 0.130 3.870 16 N -0.380 5.380 17 N -0.003 5.003 18 N -0.230 5.230 19 C -0.020 4.020 20 C -0.039 4.039 21 C -0.138 4.138 22 C -0.073 4.073 23 C -0.116 4.116 24 C 0.086 3.914 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.009 0.991 29 H 0.094 0.906 30 H 0.261 0.739 31 H 0.327 0.673 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.203 -4.556 -17.937 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.185 4.185 3 C 0.110 3.890 4 H 0.052 0.948 5 C -0.531 4.531 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.309 5.309 14 C -0.085 4.085 15 C 0.009 3.991 16 N -0.175 5.175 17 N 0.018 4.982 18 N -0.108 5.108 19 C -0.145 4.145 20 C -0.061 4.061 21 C -0.159 4.159 22 C -0.095 4.095 23 C -0.138 4.138 24 C -0.036 4.036 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.028 0.972 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.130 0.870 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.091 -2.698 -17.224 17.434 hybrid contribution -1.226 -1.395 0.675 1.976 sum -1.317 -4.093 -16.549 17.099 Atomic orbital electron populations 1.21565 0.97506 0.98079 1.01304 1.22113 0.95134 1.00990 1.00309 1.19218 0.96280 0.88710 0.84767 0.94822 1.20977 1.30851 1.11684 0.89625 0.91932 1.24914 0.95473 0.95152 0.98750 1.69872 1.38989 1.24034 1.20585 0.86596 0.79564 0.80056 0.81403 1.20331 1.21467 1.20258 1.60886 1.03547 1.63346 1.03168 1.22245 0.98699 0.97526 0.90047 1.22015 0.88198 1.04233 0.84683 1.50449 1.23036 1.15978 1.28007 1.81696 0.93472 1.14569 1.08480 1.74597 1.22121 1.06207 1.07846 1.19882 0.95861 0.96779 1.02027 1.20192 0.99336 0.91257 0.95286 1.20722 0.95745 0.98373 1.01041 1.20839 0.96867 0.97970 0.93819 1.19916 1.00195 0.92473 1.01250 1.19464 0.98649 0.91570 0.93955 0.95803 0.91368 0.95268 0.97182 0.88775 0.92951 0.85489 0.95558 0.90654 0.88903 0.87019 0.84664 0.84807 0.84661 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.39 37.16 0.35 -2.20 16 2 C -0.15 -3.27 5.50 -26.73 -0.15 -3.41 16 3 C 0.22 5.17 2.33 -68.86 -0.16 5.01 16 4 H 0.03 0.91 7.86 -51.93 -0.41 0.50 16 5 C -0.49 -12.90 7.35 -34.44 -0.25 -13.15 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.55 5.22 -17.82 -0.09 1.46 16 8 N -0.90 -24.80 11.39 55.43 0.63 -24.17 16 9 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -13.20 6.25 -107.95 -0.68 -13.88 16 14 C 0.05 0.78 5.81 -3.83 -0.02 0.76 16 15 C 0.13 1.77 6.73 -4.05 -0.03 1.74 16 16 N -0.38 -5.66 3.72 -58.73 -0.22 -5.88 16 17 N 0.00 -0.05 13.73 60.35 0.83 0.78 16 18 N -0.23 -3.73 12.36 32.07 0.40 -3.33 16 19 C -0.02 -0.29 7.26 -84.98 -0.62 -0.90 16 20 C -0.04 -0.40 10.06 -39.53 -0.40 -0.80 16 21 C -0.14 -1.14 9.95 -39.99 -0.40 -1.54 16 22 C -0.07 -0.63 9.97 -39.91 -0.40 -1.02 16 23 C -0.12 -1.26 10.01 -39.84 -0.40 -1.66 16 24 C 0.09 1.18 6.94 -84.15 -0.58 0.60 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 1.52 7.05 -51.93 -0.37 1.16 16 27 H 0.03 0.51 6.42 -51.93 -0.33 0.18 16 28 H 0.01 0.20 7.24 -51.93 -0.38 -0.18 16 29 H 0.09 2.40 6.25 -51.93 -0.32 2.08 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.33 5.83 6.56 -39.30 -0.26 5.57 16 32 H 0.03 0.46 7.23 -51.93 -0.38 0.09 16 33 H 0.08 1.43 8.13 -51.93 -0.42 1.00 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 38 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -29.46 324.34 -7.69 -37.15 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.37 Total: 3.67 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -3.15 Total: -15.12 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.96 Total: -46.48 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.46 -7.69 -37.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.894 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds