Wall clock time and date at job start Mon Mar 30 2020 01:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 H 1.09004 * 109.47068 * 174.09447 * 3 2 1 5 5 C 1.50697 * 109.47215 * 54.09119 * 3 2 1 6 6 H 1.08004 * 120.00291 * 240.00140 * 5 3 2 7 7 C 1.37874 * 119.99864 * 60.00175 * 5 3 2 8 8 N 1.31520 * 120.00088 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00306 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46948 * 59.99887 * 9 7 5 11 11 H 1.48497 * 109.47535 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47286 * 300.00220 * 9 7 5 13 13 N 1.46907 * 109.46852 * 294.09208 * 3 2 1 14 14 C 1.46894 * 111.00067 * 275.79805 * 13 3 2 15 15 C 1.53000 * 109.47462 * 176.18004 * 14 13 3 16 16 N 1.46490 * 109.47335 * 180.02562 * 15 14 13 17 17 N 1.40285 * 126.76001 * 269.68611 * 16 15 14 18 18 N 1.28648 * 109.43122 * 179.81240 * 17 16 15 19 19 C 1.34790 * 110.31606 * 0.46189 * 18 17 16 20 20 C 1.40130 * 133.15632 * 179.70850 * 19 18 17 21 21 C 1.36413 * 119.80064 * 179.97438 * 20 19 18 22 22 C 1.38901 * 120.74885 * 0.02562 * 21 20 19 23 23 C 1.36661 * 120.58495 * 0.02598 * 22 21 20 24 24 C 1.37463 * 126.75647 * 90.00423 * 16 15 14 25 25 H 1.09001 * 109.47219 * 178.55428 * 1 2 3 26 26 H 1.08998 * 109.46628 * 298.55155 * 1 2 3 27 27 H 1.08998 * 109.47028 * 58.55177 * 1 2 3 28 28 H 1.09001 * 109.46593 * 240.00048 * 2 1 3 29 29 H 1.08993 * 109.46961 * 120.00282 * 2 1 3 30 30 H 0.97001 * 119.99737 * 180.02562 * 8 7 5 31 31 H 1.00893 * 110.99928 * 39.75890 * 13 3 2 32 32 H 1.09004 * 109.47395 * 56.18067 * 14 13 3 33 33 H 1.09005 * 109.47611 * 296.18076 * 14 13 3 34 34 H 1.08997 * 109.47020 * 300.00521 * 15 14 13 35 35 H 1.09004 * 109.46764 * 59.99677 * 15 14 13 36 36 H 1.08007 * 120.09983 * 0.02633 * 20 19 18 37 37 H 1.08000 * 119.62096 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.70712 * 179.97438 * 22 21 20 39 39 H 1.08008 * 120.09817 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1249 1.4443 0.1057 5 6 1.4219 2.1939 1.1508 6 1 0.8149 3.0670 0.9618 7 6 1.6311 1.7666 2.4448 8 7 2.3698 0.7031 2.6749 9 14 0.8655 2.6983 3.8714 10 1 -0.6126 2.6964 3.7275 11 1 1.2387 2.0408 5.1495 12 1 1.3609 4.0982 3.8713 13 7 1.6702 2.0926 -1.2644 14 6 2.6506 1.7935 -2.3166 15 6 2.1835 2.4067 -3.6383 16 7 3.1609 2.1079 -4.6877 17 7 4.2699 2.8875 -5.0486 18 7 4.9045 2.3109 -6.0077 19 6 4.2900 1.1614 -6.3510 20 6 4.5603 0.1807 -7.3148 21 6 3.7374 -0.9011 -7.4305 22 6 2.6310 -1.0436 -6.6029 23 6 2.3450 -0.1007 -5.6559 24 6 3.1686 1.0113 -5.5166 25 1 -0.3634 -1.0273 -0.0259 26 1 -0.3632 0.4912 0.9027 27 1 -0.3633 0.5362 -0.8767 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 2.5166 0.4023 3.5854 31 1 0.7402 1.8251 -1.5500 32 1 2.7438 0.7134 -2.4301 33 1 3.6179 2.2148 -2.0425 34 1 1.2163 1.9854 -3.9124 35 1 2.0903 3.4868 -3.5248 36 1 5.4180 0.2807 -7.9635 37 1 3.9483 -1.6550 -8.1746 38 1 1.9905 -1.9067 -6.7094 39 1 1.4828 -0.2196 -5.0163 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:45 Heat of formation + Delta-G solvation = 89.439322 kcal Electronic energy + Delta-G solvation = -20552.571478 eV Core-core repulsion = 17496.154408 eV Total energy + Delta-G solvation = -3056.417070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -43.09040 -38.78463 -38.48591 -36.29363 -34.34929 -32.72691 -31.47540 -31.13930 -29.52416 -27.74667 -25.30362 -24.95636 -24.10303 -23.51621 -21.79048 -21.26856 -18.82012 -18.43225 -18.02824 -17.07352 -16.73258 -16.56267 -16.37612 -15.63622 -15.52430 -15.14071 -14.78654 -14.42535 -14.37599 -13.83522 -13.50073 -13.34659 -13.13596 -13.04573 -12.89092 -12.81095 -12.68981 -12.45639 -12.39447 -12.00393 -11.80987 -11.68210 -11.56766 -11.42734 -11.02168 -10.45441 -9.86865 -9.32703 -9.09673 -8.07891 -6.16772 -0.51658 0.38158 1.05070 1.19457 1.44254 1.45564 1.52583 2.44603 2.70652 3.07246 3.21796 3.41687 3.53908 3.68353 3.86917 3.96470 4.14077 4.20827 4.29036 4.32072 4.52119 4.56936 4.66021 4.69208 4.75488 4.81628 4.94960 5.08187 5.10341 5.29419 5.38873 5.39103 5.45750 5.57530 5.68792 5.72684 5.78006 5.84793 6.26003 6.55280 6.76582 6.94602 6.94896 7.51123 8.97693 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.003709 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.933613 B = 7546.413234 C = 8015.931025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.223 3.777 4 H -0.010 1.010 5 C -0.502 4.502 6 H 0.058 0.942 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.058 3.942 15 C 0.141 3.859 16 N -0.386 5.386 17 N -0.046 5.046 18 N -0.251 5.251 19 C -0.047 4.047 20 C -0.052 4.052 21 C -0.122 4.122 22 C -0.055 4.055 23 C -0.135 4.135 24 C 0.070 3.930 25 H 0.044 0.956 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.025 0.975 29 H 0.059 0.941 30 H 0.259 0.741 31 H 0.341 0.659 32 H 0.024 0.976 33 H 0.045 0.955 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.152 0.848 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 -6.265 -19.857 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.114 3.886 4 H 0.008 0.992 5 C -0.541 4.541 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.309 5.309 14 C -0.073 4.073 15 C 0.019 3.981 16 N -0.181 5.181 17 N -0.025 5.025 18 N -0.128 5.128 19 C -0.173 4.173 20 C -0.074 4.074 21 C -0.142 4.142 22 C -0.077 4.077 23 C -0.157 4.157 24 C -0.052 4.052 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.161 0.839 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.144 0.856 35 H 0.131 0.869 36 H 0.170 0.830 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.026 -4.388 -19.165 19.765 hybrid contribution -0.593 -1.009 1.136 1.631 sum -2.619 -5.397 -18.029 19.000 Atomic orbital electron populations 1.21451 0.95298 0.99589 1.01210 1.21941 0.96995 0.99512 0.99354 1.18944 0.93473 0.89895 0.86283 0.99221 1.21238 1.30572 1.11594 0.90697 0.92412 1.25611 0.95936 0.95876 1.01071 1.70016 1.40125 1.25284 1.20780 0.85690 0.79248 0.78632 0.78531 1.19221 1.21454 1.20293 1.60650 1.04741 1.62996 1.02529 1.22065 0.96879 0.97339 0.91049 1.21895 0.89066 1.04246 0.82847 1.50415 1.22846 1.16510 1.28371 1.81615 0.94958 1.16047 1.09886 1.74498 1.22758 1.07453 1.08075 1.20439 0.96345 0.97049 1.03494 1.20584 1.00697 0.91189 0.94958 1.21248 0.94361 0.97815 1.00817 1.21402 0.96645 0.97893 0.91742 1.20280 1.00601 0.92107 1.02671 1.19953 0.99375 0.92033 0.93800 0.93646 0.93958 0.92613 0.95597 0.92210 0.93201 0.83912 0.95823 0.93654 0.85639 0.86934 0.82997 0.80790 0.80761 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 9.39 71.98 0.68 -3.85 16 2 C -0.14 -6.18 5.50 30.60 0.17 -6.01 16 3 C 0.22 10.78 2.33 44.17 0.10 10.89 16 4 H -0.01 -0.58 7.86 -2.39 -0.02 -0.59 16 5 C -0.50 -26.63 7.35 25.60 0.19 -26.44 16 6 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.72 5.22 84.65 0.44 1.17 16 8 N -0.92 -52.28 11.39 21.45 0.24 -52.04 16 9 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 N -0.68 -26.22 6.25 -495.44 -3.10 -29.32 16 14 C 0.06 1.99 5.81 86.30 0.50 2.49 16 15 C 0.14 3.75 6.73 86.38 0.58 4.33 16 16 N -0.39 -11.59 3.72 -339.71 -1.26 -12.85 16 17 N -0.05 -1.62 13.73 37.02 0.51 -1.12 16 18 N -0.25 -8.43 12.36 -52.44 -0.65 -9.08 16 19 C -0.05 -1.32 7.26 39.72 0.29 -1.03 16 20 C -0.05 -0.98 10.06 22.30 0.22 -0.76 16 21 C -0.12 -1.49 9.95 22.00 0.22 -1.27 16 22 C -0.06 -0.69 9.97 22.06 0.22 -0.47 16 23 C -0.13 -2.53 10.01 22.10 0.22 -2.31 16 24 C 0.07 1.87 6.94 39.03 0.27 2.14 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.83 7.05 -2.39 -0.02 1.82 16 27 H 0.05 1.81 6.42 -2.39 -0.02 1.80 16 28 H 0.03 1.04 7.24 -2.39 -0.02 1.02 16 29 H 0.06 3.10 6.25 -2.39 -0.01 3.09 16 30 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 31 H 0.34 11.53 6.56 -89.70 -0.59 10.94 16 32 H 0.02 0.82 7.23 -2.38 -0.02 0.81 16 33 H 0.04 1.81 8.13 -2.38 -0.02 1.79 16 34 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.11 2.97 8.14 -2.38 -0.02 2.96 16 36 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 38 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 39 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -67.62 324.34 2.34 -65.28 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.47 Total: 15.11 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.10 Total: -21.13 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -4.26 Total: -104.41 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -67.62 2.34 -65.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.718 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds