Wall clock time and date at job start Mon Mar 30 2020 01:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.09007 * 109.46970 * 175.06943 * 3 2 1 5 5 C 1.50698 * 109.47244 * 55.06375 * 3 2 1 6 6 H 1.07994 * 120.00318 * 245.69570 * 5 3 2 7 7 C 1.37877 * 119.99731 * 65.70266 * 5 3 2 8 8 N 1.31509 * 120.00354 * 5.49316 * 7 5 3 9 9 Si 1.86807 * 119.99799 * 185.49906 * 7 5 3 10 10 H 1.48505 * 109.46889 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.46842 * 299.99335 * 9 7 5 12 12 H 1.48489 * 109.47327 * 59.99605 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 111.00077 * 279.83057 * 13 3 2 15 15 C 1.50698 * 109.47092 * 185.02718 * 14 13 3 16 16 C 1.40548 * 119.81765 * 90.00033 * 15 14 13 17 17 C 1.36025 * 119.74535 * 179.97438 * 16 15 14 18 18 C 1.40818 * 119.22873 * 359.97438 * 17 16 15 19 19 N 1.32305 * 133.47130 * 180.02562 * 18 17 16 20 20 N 1.28680 * 109.48463 * 179.97438 * 19 18 17 21 21 C 1.30797 * 110.29337 * 359.97438 * 20 19 18 22 22 C 1.50699 * 126.25012 * 179.97438 * 21 20 19 23 23 N 1.36067 * 107.50503 * 0.02562 * 21 20 19 24 24 C 1.34954 * 119.81448 * 269.71949 * 15 14 13 25 25 H 1.08996 * 109.46990 * 185.00915 * 1 2 3 26 26 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 27 27 H 1.09000 * 109.46735 * 65.00993 * 1 2 3 28 28 H 1.09002 * 109.47190 * 239.99669 * 2 1 3 29 29 H 1.09000 * 109.46981 * 119.99950 * 2 1 3 30 30 H 0.97008 * 120.00324 * 355.15057 * 8 7 5 31 31 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 32 32 H 1.09006 * 109.46987 * 305.02572 * 14 13 3 33 33 H 1.08993 * 109.47459 * 65.02191 * 14 13 3 34 34 H 1.07991 * 120.12828 * 359.94983 * 16 15 14 35 35 H 1.07996 * 120.38848 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.47387 * 270.00532 * 22 21 20 37 37 H 1.09003 * 109.46869 * 29.99474 * 22 21 20 38 38 H 1.08998 * 109.47589 * 149.99491 * 22 21 20 39 39 H 1.08003 * 119.74552 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1265 1.4437 0.0883 5 6 1.4404 2.1873 1.1647 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6697 9 14 0.9064 2.6439 3.8983 10 1 1.4298 2.0815 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5595 1.7301 -2.3474 15 6 2.2047 2.5155 -3.5836 16 6 2.8085 3.7632 -3.8162 17 6 2.4875 4.4706 -4.9328 18 6 1.5519 3.9367 -5.8397 19 7 1.0448 4.3674 -6.9833 20 7 0.2108 3.4988 -7.4371 21 6 0.1347 2.4758 -6.6256 22 6 -0.7312 1.2560 -6.8083 23 7 0.9792 2.7145 -5.5858 24 6 1.3131 2.0143 -4.4640 25 1 -0.3633 -1.0237 0.0897 26 1 -0.3633 0.5896 0.8417 27 1 -0.3633 0.4342 -0.9315 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.0723 0.4282 1.9218 31 1 0.6931 1.8857 -1.4926 32 1 3.5861 1.9537 -2.0570 33 1 2.4646 0.6642 -2.5544 34 1 3.5243 4.1588 -3.1109 35 1 2.9449 5.4305 -5.1216 36 1 -1.7007 1.4251 -6.3398 37 1 -0.8703 1.0653 -7.8724 38 1 -0.2489 0.3953 -6.3449 39 1 0.8583 1.0527 -4.2774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:21 Heat of formation + Delta-G solvation = 79.089900 kcal Electronic energy + Delta-G solvation = -20738.786736 eV Core-core repulsion = 17681.920881 eV Total energy + Delta-G solvation = -3056.865855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -44.60147 -39.85741 -38.33195 -35.48217 -34.92770 -33.23735 -32.26315 -31.24511 -28.57011 -27.97429 -26.23943 -25.41879 -24.68634 -23.32739 -22.35921 -21.36369 -19.23165 -18.72442 -18.13602 -17.73812 -16.71844 -16.32747 -15.95817 -15.76947 -15.48051 -15.06210 -14.89247 -14.34992 -14.22172 -13.93715 -13.68974 -13.55852 -13.32294 -13.17251 -13.04546 -12.80954 -12.59973 -12.57027 -12.05487 -12.00801 -11.91564 -11.87165 -11.65376 -11.62970 -10.65789 -10.48742 -10.31073 -9.14512 -8.98251 -8.45020 -6.16244 -0.39557 0.02642 1.23848 1.57423 1.58905 1.63723 1.82635 2.24931 2.62724 2.98346 3.30107 3.33185 3.44702 3.62484 3.73081 3.80677 3.82318 4.30836 4.36730 4.39172 4.40331 4.51761 4.57834 4.60691 4.70994 4.79295 4.87644 4.96003 4.97247 5.04180 5.13640 5.23125 5.26014 5.36655 5.44667 5.60682 5.82835 5.98466 6.26112 6.57691 6.73722 6.83803 7.40687 7.58430 8.91981 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.003964 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.807860 B = 7061.137271 C = 7425.982410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.146 4.146 3 C 0.209 3.791 4 H 0.002 0.998 5 C -0.574 4.574 6 H 0.043 0.957 7 C -0.025 4.025 8 N -0.943 5.943 9 Si 1.103 2.897 10 H -0.290 1.290 11 H -0.279 1.279 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.107 3.893 15 C -0.084 4.084 16 C -0.053 4.053 17 C -0.097 4.097 18 C 0.181 3.819 19 N -0.339 5.339 20 N -0.293 5.293 21 C 0.141 3.859 22 C -0.062 4.062 23 N -0.390 5.390 24 C 0.065 3.935 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.261 0.739 31 H 0.335 0.665 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.164 0.836 35 H 0.175 0.825 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.131 -2.066 -13.981 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.186 4.186 3 C 0.100 3.900 4 H 0.020 0.980 5 C -0.612 4.612 6 H 0.061 0.939 7 C -0.224 4.224 8 N -0.583 5.583 9 Si 0.927 3.073 10 H -0.216 1.216 11 H -0.204 1.204 12 H -0.199 1.199 13 N -0.308 5.308 14 C -0.023 4.023 15 C -0.088 4.088 16 C -0.078 4.078 17 C -0.118 4.118 18 C -0.068 4.068 19 N -0.184 5.184 20 N -0.133 5.133 21 C -0.122 4.122 22 C -0.120 4.120 23 N -0.070 5.070 24 C -0.058 4.058 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.181 0.819 35 H 0.192 0.808 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.216 -0.505 -13.569 13.954 hybrid contribution 0.286 -1.590 -0.606 1.726 sum -2.930 -2.095 -14.175 14.625 Atomic orbital electron populations 1.21514 0.95275 1.00144 1.01398 1.22136 0.97396 0.99813 0.99301 1.19117 0.93881 0.89388 0.87597 0.98005 1.22056 1.29282 1.17626 0.92284 0.93856 1.26766 0.95798 0.97126 1.02677 1.70917 1.26089 1.25847 1.35411 0.83080 0.75575 0.75379 0.73241 1.21628 1.20449 1.19902 1.60626 1.05668 1.62537 1.01992 1.20768 0.98149 0.96065 0.87270 1.19634 0.96928 0.96412 0.95833 1.21398 0.98129 0.92631 0.95660 1.20485 0.96588 1.02475 0.92295 1.22709 1.00569 0.86325 0.97241 1.74805 1.11886 1.23133 1.08582 1.74059 1.14572 1.00105 1.24551 1.25714 0.98655 1.01955 0.85919 1.20458 0.97015 0.88500 1.06076 1.43780 1.29486 1.16262 1.17449 1.21820 0.99455 0.99420 0.85084 0.93353 0.93765 0.92480 0.93289 0.94510 0.92751 0.84574 0.90096 0.93042 0.81857 0.80791 0.88148 0.87495 0.88046 0.78721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 9.38 71.98 0.68 -3.75 16 2 C -0.15 -5.74 5.45 30.59 0.17 -5.58 16 3 C 0.21 9.05 1.95 44.17 0.09 9.14 16 4 H 0.00 0.10 7.32 -2.38 -0.02 0.08 16 5 C -0.57 -29.13 7.18 25.60 0.18 -28.94 16 6 H 0.04 2.26 7.82 -2.91 -0.02 2.24 16 7 C -0.03 -1.34 5.29 84.66 0.45 -0.89 16 8 N -0.94 -53.55 13.20 21.45 0.28 -53.27 16 9 Si 1.10 48.15 29.91 68.60 2.05 50.20 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 12 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 13 N -0.68 -23.35 6.18 -499.45 -3.09 -26.44 16 14 C 0.11 2.80 5.59 85.56 0.48 3.28 16 15 C -0.08 -1.92 5.40 -20.06 -0.11 -2.02 16 16 C -0.05 -1.19 9.74 22.32 0.22 -0.97 16 17 C -0.10 -2.28 10.11 22.39 0.23 -2.06 16 18 C 0.18 5.27 7.92 134.07 1.06 6.33 16 19 N -0.34 -11.48 12.31 -55.40 -0.68 -12.16 16 20 N -0.29 -9.34 12.19 -49.69 -0.61 -9.94 16 21 C 0.14 3.46 8.14 137.71 1.12 4.58 16 22 C -0.06 -0.81 10.41 71.24 0.74 -0.07 16 23 N -0.39 -9.79 2.95 -342.88 -1.01 -10.80 16 24 C 0.06 1.34 10.51 83.23 0.88 2.22 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.04 1.82 6.88 -2.39 -0.02 1.80 16 27 H 0.06 1.68 6.68 -2.39 -0.02 1.67 16 28 H 0.05 1.63 7.13 -2.39 -0.02 1.61 16 29 H 0.04 1.68 6.17 -2.39 -0.01 1.66 16 30 H 0.26 14.71 5.62 -92.70 -0.52 14.19 16 31 H 0.34 10.86 6.79 -89.69 -0.61 10.25 16 32 H 0.08 2.21 7.90 -2.38 -0.02 2.19 16 33 H 0.05 1.19 7.12 -2.39 -0.02 1.18 16 34 H 0.16 3.15 8.06 -2.92 -0.02 3.13 16 35 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.20 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -68.06 321.29 3.82 -64.24 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.70 Total: 16.92 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 6.17 Total: -18.74 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -5.10 Total: -112.61 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.05 Total: 50.20 kcal Total: -68.06 3.82 -64.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.327 kcal (2) G-P(sol) polarization free energy of solvation -68.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds