Wall clock time and date at job start Mon Mar 30 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52999 * 109.46728 * 2 1 4 4 H 1.08996 * 109.47334 * 54.15769 * 3 2 1 5 5 C 1.50706 * 109.46764 * 174.15963 * 3 2 1 6 6 H 1.08002 * 120.00025 * 119.99730 * 5 3 2 7 7 C 1.37872 * 119.99688 * 299.99876 * 5 3 2 8 8 N 1.31517 * 119.99827 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00147 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47021 * 90.00574 * 9 7 5 11 11 H 1.48508 * 109.47199 * 209.99952 * 9 7 5 12 12 H 1.48498 * 109.47400 * 330.00259 * 9 7 5 13 13 N 1.46899 * 109.47167 * 294.15171 * 3 2 1 14 14 C 1.47964 * 111.00231 * 181.81200 * 13 3 2 15 15 C 1.53935 * 86.18178 * 222.42345 * 14 13 3 16 16 N 1.46902 * 113.73190 * 138.08158 * 15 14 13 17 17 C 1.48809 * 111.18402 * 57.66296 * 16 15 14 18 18 C 1.54935 * 103.34632 * 159.50721 * 17 16 15 19 19 C 1.54596 * 102.92396 * 322.68757 * 18 17 16 20 20 F 1.39908 * 110.30637 * 263.04909 * 19 18 17 21 21 F 1.39892 * 110.31324 * 140.87549 * 19 18 17 22 22 C 1.47902 * 110.99550 * 174.99933 * 16 15 14 23 23 C 1.47962 * 110.99581 * 82.45466 * 13 3 2 24 24 H 1.09000 * 109.46745 * 307.06208 * 1 2 3 25 25 H 1.08995 * 109.46923 * 67.06278 * 1 2 3 26 26 H 1.08993 * 109.46867 * 187.06609 * 1 2 3 27 27 H 1.08996 * 109.46701 * 239.99649 * 2 1 3 28 28 H 1.08997 * 109.47074 * 120.00162 * 2 1 3 29 29 H 0.97001 * 119.99901 * 180.02562 * 8 7 5 30 30 H 1.09003 * 113.75418 * 108.10633 * 14 13 3 31 31 H 1.09001 * 113.75253 * 336.74401 * 14 13 3 32 32 H 1.09006 * 113.72971 * 269.25790 * 15 14 13 33 33 H 1.09001 * 110.52172 * 41.06854 * 17 16 15 34 34 H 1.09002 * 110.83985 * 278.09066 * 17 16 15 35 35 H 1.09003 * 110.72031 * 204.32878 * 18 17 16 36 36 H 1.08998 * 110.72619 * 81.04650 * 18 17 16 37 37 H 1.08991 * 109.91890 * 94.80477 * 22 16 15 38 38 H 1.08999 * 109.92218 * 333.69923 * 22 16 15 39 39 H 1.09002 * 113.75816 * 23.26938 * 23 13 3 40 40 H 1.08998 * 113.76579 * 251.89997 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5938 1.9856 0.8330 5 6 3.5401 1.4450 0.1446 6 1 4.1561 1.8858 -0.6253 7 6 4.1261 0.8845 1.2597 8 7 5.4351 0.8871 1.3861 9 14 3.0606 0.1228 2.5915 10 1 2.8430 -1.3148 2.2895 11 1 3.7403 0.2551 3.9053 12 1 1.7515 0.8224 2.6388 13 7 1.6689 2.0931 -1.2637 14 6 2.1839 3.4791 -1.3179 15 6 0.8135 3.8557 -1.9093 16 7 0.2608 5.1059 -1.3712 17 6 1.1909 6.2456 -1.5956 18 6 0.2711 7.4867 -1.4765 19 6 -1.0415 7.0092 -2.1391 20 9 -1.0924 7.4282 -3.4730 21 9 -2.1469 7.4962 -1.4335 22 6 -0.9940 5.4718 -2.0634 23 6 0.2766 2.5913 -1.2147 24 1 -0.3633 0.6194 0.8201 25 1 -0.3633 0.4005 -0.9464 26 1 -0.3633 -1.0198 0.1264 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 5.8474 0.4925 2.1705 30 1 3.0135 3.6125 -2.0122 31 1 2.3740 3.9155 -0.3373 32 1 0.7777 3.8091 -2.9978 33 1 1.6327 6.1881 -2.5904 34 1 1.9681 6.2680 -0.8317 35 1 0.6922 8.3324 -2.0202 36 1 0.1038 7.7439 -0.4306 37 1 -1.8504 5.1012 -1.5003 38 1 -1.0002 5.0502 -3.0686 39 1 -0.0912 2.7681 -0.2039 40 1 -0.4178 2.0154 -1.8265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:28 Heat of formation + Delta-G solvation = -49.794908 kcal Electronic energy + Delta-G solvation = -22266.383979 eV Core-core repulsion = 18753.240073 eV Total energy + Delta-G solvation = -3513.143906 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.155 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.09778 -47.21350 -39.94330 -37.59740 -34.17814 -31.98535 -30.78992 -28.95263 -28.26055 -25.41261 -25.00719 -22.75447 -21.95668 -21.47509 -19.76060 -19.25286 -17.80623 -17.11563 -16.88095 -16.20130 -15.72146 -15.51283 -14.69727 -14.53636 -14.34235 -13.94059 -13.57762 -13.54115 -13.45155 -12.91134 -12.71919 -12.50074 -12.37990 -12.14085 -11.97250 -11.86539 -11.71793 -11.63305 -11.45574 -10.97124 -10.79986 -10.42826 -10.16396 -10.00391 -9.84597 -9.29491 -9.02922 -8.63967 -8.58256 -7.94369 -6.11473 -4.10809 3.24509 3.35309 3.35937 3.36782 3.66409 3.72715 4.07297 4.31927 4.36371 4.68926 4.75788 4.87937 4.96187 5.19144 5.26134 5.33684 5.35305 5.54412 5.57353 5.68474 5.73334 5.87708 5.94831 6.01649 6.06514 6.11991 6.29560 6.35798 6.47044 6.56223 6.60394 6.73551 6.80896 6.99750 7.09340 7.35364 7.75079 7.89918 8.54417 8.93805 9.50545 11.01283 Molecular weight = 274.16amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.004557 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.380292 B = 6142.945795 C = 6481.157383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C 0.159 3.841 4 H 0.009 0.991 5 C -0.510 4.510 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.266 1.266 13 N -0.465 5.465 14 C 0.041 3.959 15 C 0.026 3.974 16 N -0.498 5.498 17 C 0.035 3.965 18 C -0.159 4.159 19 C 0.274 3.726 20 F -0.197 7.197 21 F -0.194 7.194 22 C 0.000 4.000 23 C 0.015 3.985 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.264 0.736 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.333 10.495 -6.115 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C 0.050 3.950 4 H 0.026 0.974 5 C -0.548 4.548 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.191 1.191 13 N -0.188 5.188 14 C -0.089 4.089 15 C -0.082 4.082 16 N -0.223 5.223 17 C -0.092 4.092 18 C -0.198 4.198 19 C 0.237 3.763 20 F -0.179 7.179 21 F -0.175 7.175 22 C -0.129 4.129 23 C -0.114 4.114 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.080 9.862 -5.945 16.689 hybrid contribution -0.675 0.128 0.558 0.885 sum -12.754 9.989 -5.388 17.073 Atomic orbital electron populations 1.22034 0.98162 1.00066 1.01216 1.21847 0.93166 0.99503 1.01170 1.20232 0.97078 0.91062 0.86599 0.97389 1.20943 0.88822 1.38815 1.06260 0.90246 1.24923 0.94777 0.95530 0.97760 1.69883 1.09097 1.45387 1.29224 0.86893 0.80791 0.79891 0.80931 1.20473 1.22490 1.19134 1.68425 1.02057 1.13015 1.35299 1.23649 0.93941 0.90515 1.00754 1.24157 0.98080 0.88412 0.97572 1.65233 1.02343 1.02687 1.52040 1.23260 0.95786 0.88061 1.02086 1.23545 0.92763 0.99830 1.03612 1.21951 0.85518 0.94117 0.74740 1.93023 1.96888 1.91816 1.36128 1.93017 1.56506 1.89699 1.78267 1.23853 0.97354 0.90819 1.00849 1.24048 0.94726 0.92662 0.99991 0.93829 0.92336 0.94221 0.91517 0.93350 0.92591 0.90318 0.90213 0.90708 0.92474 0.87949 0.88413 0.87520 0.87542 0.90764 0.90925 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 8.80 37.16 0.33 -2.46 16 2 C -0.12 -2.58 5.10 -26.73 -0.14 -2.72 16 3 C 0.16 3.65 0.99 -68.86 -0.07 3.58 16 4 H 0.01 0.21 6.62 -51.93 -0.34 -0.14 16 5 C -0.51 -13.93 8.61 -34.44 -0.30 -14.22 16 6 H 0.08 2.36 7.60 -52.49 -0.40 1.96 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 9 Si 0.88 21.74 24.42 -169.99 -4.15 17.59 16 10 H -0.28 -6.69 6.82 56.52 0.39 -6.30 16 11 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.27 -6.30 6.53 56.52 0.37 -5.94 16 13 N -0.46 -9.18 5.97 -231.80 -1.38 -10.57 16 14 C 0.04 0.72 5.82 -2.76 -0.02 0.70 16 15 C 0.03 0.38 3.26 -69.39 -0.23 0.15 16 16 N -0.50 -6.30 5.26 -223.64 -1.18 -7.48 16 17 C 0.04 0.38 5.91 -1.74 -0.01 0.37 16 18 C -0.16 -1.50 6.66 -24.87 -0.17 -1.67 16 19 C 0.27 3.00 2.64 -25.37 -0.07 2.93 16 20 F -0.20 -2.34 17.08 2.25 0.04 -2.30 16 21 F -0.19 -2.34 17.08 2.25 0.04 -2.31 16 22 C 0.00 0.00 6.40 -2.75 -0.02 -0.01 16 23 C 0.02 0.24 5.56 -2.76 -0.02 0.23 16 24 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 25 H 0.06 0.95 5.59 -51.93 -0.29 0.65 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.05 1.12 3.22 -51.93 -0.17 0.95 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.53 7.87 -51.93 -0.41 1.13 16 32 H 0.08 1.02 7.79 -51.93 -0.40 0.61 16 33 H 0.06 0.60 8.02 -51.93 -0.42 0.18 16 34 H 0.10 1.12 8.12 -51.93 -0.42 0.69 16 35 H 0.10 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.11 0.96 8.12 -51.93 -0.42 0.54 16 37 H 0.11 1.14 8.02 -51.93 -0.42 0.73 16 38 H 0.07 0.78 7.43 -51.93 -0.39 0.40 16 39 H 0.07 1.23 7.49 -51.93 -0.39 0.84 16 40 H 0.08 1.13 6.96 -51.93 -0.36 0.77 16 LS Contribution 311.25 15.07 4.69 4.69 Total: -1.00 -29.48 311.25 -8.08 -37.56 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.12 Total: 0.19 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -0.79 Total: -11.16 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -1.79 Total: -44.25 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.08 Total: -4.61 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.48 -8.08 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.240 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds