Wall clock time and date at job start Mon Mar 30 2020 02:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.52999 * 109.46728 * 2 1 4 4 H 1.08996 * 109.47334 * 54.15769 * 3 2 1 5 5 C 1.50706 * 109.46764 * 174.15963 * 3 2 1 6 6 H 1.08002 * 120.00025 * 119.99730 * 5 3 2 7 7 C 1.37872 * 119.99688 * 299.99876 * 5 3 2 8 8 N 1.31517 * 119.99827 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00147 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47021 * 90.00574 * 9 7 5 11 11 H 1.48508 * 109.47199 * 209.99952 * 9 7 5 12 12 H 1.48498 * 109.47400 * 330.00259 * 9 7 5 13 13 N 1.46899 * 109.47167 * 294.15171 * 3 2 1 14 14 C 1.47964 * 111.00231 * 181.81200 * 13 3 2 15 15 C 1.53935 * 86.18178 * 222.42345 * 14 13 3 16 16 N 1.46902 * 113.73190 * 138.08158 * 15 14 13 17 17 C 1.48809 * 111.18402 * 57.66296 * 16 15 14 18 18 C 1.54935 * 103.34632 * 159.50721 * 17 16 15 19 19 C 1.54596 * 102.92396 * 322.68757 * 18 17 16 20 20 F 1.39908 * 110.30637 * 263.04909 * 19 18 17 21 21 F 1.39892 * 110.31324 * 140.87549 * 19 18 17 22 22 C 1.47902 * 110.99550 * 174.99933 * 16 15 14 23 23 C 1.47962 * 110.99581 * 82.45466 * 13 3 2 24 24 H 1.09000 * 109.46745 * 307.06208 * 1 2 3 25 25 H 1.08995 * 109.46923 * 67.06278 * 1 2 3 26 26 H 1.08993 * 109.46867 * 187.06609 * 1 2 3 27 27 H 1.08996 * 109.46701 * 239.99649 * 2 1 3 28 28 H 1.08997 * 109.47074 * 120.00162 * 2 1 3 29 29 H 0.97001 * 119.99901 * 180.02562 * 8 7 5 30 30 H 1.09003 * 113.75418 * 108.10633 * 14 13 3 31 31 H 1.09001 * 113.75253 * 336.74401 * 14 13 3 32 32 H 1.09006 * 113.72971 * 269.25790 * 15 14 13 33 33 H 1.09001 * 110.52172 * 41.06854 * 17 16 15 34 34 H 1.09002 * 110.83985 * 278.09066 * 17 16 15 35 35 H 1.09003 * 110.72031 * 204.32878 * 18 17 16 36 36 H 1.08998 * 110.72619 * 81.04650 * 18 17 16 37 37 H 1.08991 * 109.91890 * 94.80477 * 22 16 15 38 38 H 1.08999 * 109.92218 * 333.69923 * 22 16 15 39 39 H 1.09002 * 113.75816 * 23.26938 * 23 13 3 40 40 H 1.08998 * 113.76579 * 251.89997 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5938 1.9856 0.8330 5 6 3.5401 1.4450 0.1446 6 1 4.1561 1.8858 -0.6253 7 6 4.1261 0.8845 1.2597 8 7 5.4351 0.8871 1.3861 9 14 3.0606 0.1228 2.5915 10 1 2.8430 -1.3148 2.2895 11 1 3.7403 0.2551 3.9053 12 1 1.7515 0.8224 2.6388 13 7 1.6689 2.0931 -1.2637 14 6 2.1839 3.4791 -1.3179 15 6 0.8135 3.8557 -1.9093 16 7 0.2608 5.1059 -1.3712 17 6 1.1909 6.2456 -1.5956 18 6 0.2711 7.4867 -1.4765 19 6 -1.0415 7.0092 -2.1391 20 9 -1.0924 7.4282 -3.4730 21 9 -2.1469 7.4962 -1.4335 22 6 -0.9940 5.4718 -2.0634 23 6 0.2766 2.5913 -1.2147 24 1 -0.3633 0.6194 0.8201 25 1 -0.3633 0.4005 -0.9464 26 1 -0.3633 -1.0198 0.1264 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 5.8474 0.4925 2.1705 30 1 3.0135 3.6125 -2.0122 31 1 2.3740 3.9155 -0.3373 32 1 0.7777 3.8091 -2.9978 33 1 1.6327 6.1881 -2.5904 34 1 1.9681 6.2680 -0.8317 35 1 0.6922 8.3324 -2.0202 36 1 0.1038 7.7439 -0.4306 37 1 -1.8504 5.1012 -1.5003 38 1 -1.0002 5.0502 -3.0686 39 1 -0.0912 2.7681 -0.2039 40 1 -0.4178 2.0154 -1.8265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:28 Heat of formation + Delta-G solvation = -71.879169 kcal Electronic energy + Delta-G solvation = -22267.341624 eV Core-core repulsion = 18753.240073 eV Total energy + Delta-G solvation = -3514.101551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.155 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.98061 -48.10412 -41.27044 -38.72599 -35.85031 -33.97914 -31.84112 -30.06361 -29.70552 -26.83371 -26.51480 -24.34063 -23.06972 -22.34171 -21.43244 -20.51922 -18.89963 -18.69557 -18.08149 -17.34553 -17.18344 -16.62377 -16.29039 -15.59448 -15.41657 -15.17908 -15.00514 -14.73610 -14.47936 -14.43848 -14.04706 -13.87346 -13.77117 -13.55360 -13.27004 -13.08055 -12.98221 -12.79341 -12.59252 -12.51587 -12.19379 -11.92316 -11.77237 -11.54945 -11.39564 -11.04552 -10.95603 -10.64298 -9.61955 -9.52209 -8.30540 -6.33404 1.28785 1.33644 1.43509 2.30003 2.43581 2.79041 2.84728 3.03809 3.17716 3.33749 3.45041 3.53946 4.06550 4.08277 4.14898 4.22152 4.35959 4.40016 4.44893 4.52458 4.61496 4.67704 4.72732 4.76635 4.79967 4.86856 4.89162 4.93303 4.98064 5.09174 5.17338 5.27973 5.40774 5.61048 5.68110 5.79936 5.89897 6.09664 6.56554 6.72549 7.31886 8.85879 Molecular weight = 274.16amu Principal moments of inertia in cm(-1) A = 0.028583 B = 0.004557 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.380292 B = 6142.945795 C = 6481.157383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.166 3.834 4 H -0.001 1.001 5 C -0.509 4.509 6 H 0.039 0.961 7 C 0.016 3.984 8 N -0.947 5.947 9 Si 0.945 3.055 10 H -0.267 1.267 11 H -0.299 1.299 12 H -0.249 1.249 13 N -0.483 5.483 14 C 0.035 3.965 15 C 0.053 3.947 16 N -0.510 5.510 17 C 0.033 3.967 18 C -0.151 4.151 19 C 0.272 3.728 20 F -0.202 7.202 21 F -0.200 7.200 22 C 0.002 3.998 23 C 0.020 3.980 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.034 0.966 29 H 0.265 0.735 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.073 10.734 -6.415 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C 0.057 3.943 4 H 0.017 0.983 5 C -0.548 4.548 6 H 0.057 0.943 7 C -0.182 4.182 8 N -0.587 5.587 9 Si 0.772 3.228 10 H -0.194 1.194 11 H -0.227 1.227 12 H -0.173 1.173 13 N -0.206 5.206 14 C -0.094 4.094 15 C -0.055 4.055 16 N -0.235 5.235 17 C -0.094 4.094 18 C -0.189 4.189 19 C 0.235 3.765 20 F -0.183 7.183 21 F -0.181 7.181 22 C -0.127 4.127 23 C -0.109 4.109 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.846 10.113 -6.263 19.024 hybrid contribution 0.233 0.136 0.553 0.616 sum -14.614 10.249 -5.710 18.740 Atomic orbital electron populations 1.21948 0.94548 1.01752 1.02330 1.21776 0.96407 0.97740 0.99978 1.20023 0.93863 0.92493 0.87920 0.98328 1.21216 0.91281 1.37358 1.04897 0.94286 1.25733 0.95842 0.96318 1.00275 1.70031 1.11099 1.47285 1.30285 0.85902 0.79613 0.79588 0.77660 1.19365 1.22705 1.17345 1.68368 1.04830 1.14089 1.33272 1.23568 0.96000 0.89954 0.99900 1.23818 0.94853 0.88944 0.97912 1.65165 1.03327 1.02536 1.52470 1.23300 0.95757 0.88083 1.02251 1.23535 0.91591 0.99630 1.04129 1.22027 0.85784 0.94115 0.74535 1.93018 1.96922 1.91857 1.36519 1.93006 1.56959 1.89776 1.78401 1.23858 0.96488 0.91003 1.01301 1.24075 0.92881 0.93505 1.00416 0.93426 0.90711 0.92100 0.92476 0.94827 0.92574 0.91182 0.92294 0.89240 0.91900 0.88514 0.86587 0.87016 0.86947 0.89793 0.91375 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 8.80 71.99 0.63 -4.10 16 2 C -0.12 -5.06 5.10 30.60 0.16 -4.91 16 3 C 0.17 7.58 0.99 44.17 0.04 7.62 16 4 H 0.00 -0.04 6.62 -2.39 -0.02 -0.05 16 5 C -0.51 -28.65 8.61 25.60 0.22 -28.43 16 6 H 0.04 2.45 7.60 -2.91 -0.02 2.42 16 7 C 0.02 0.92 5.45 84.65 0.46 1.38 16 8 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 9 Si 0.94 45.03 24.42 68.60 1.67 46.71 16 10 H -0.27 -12.22 6.82 99.48 0.68 -11.54 16 11 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 12 H -0.25 -11.09 6.53 99.48 0.65 -10.44 16 13 N -0.48 -18.71 5.97 -887.29 -5.30 -24.01 16 14 C 0.04 1.25 5.82 86.40 0.50 1.76 16 15 C 0.05 1.43 3.26 46.48 0.15 1.58 16 16 N -0.51 -11.83 5.26 -861.48 -4.53 -16.36 16 17 C 0.03 0.66 5.91 86.59 0.51 1.17 16 18 C -0.15 -2.50 6.66 31.80 0.21 -2.28 16 19 C 0.27 5.30 2.64 31.48 0.08 5.38 16 20 F -0.20 -4.29 17.08 44.97 0.77 -3.52 16 21 F -0.20 -4.40 17.08 44.97 0.77 -3.63 16 22 C 0.00 0.04 6.40 86.45 0.55 0.60 16 23 C 0.02 0.60 5.56 86.41 0.48 1.08 16 24 H 0.05 1.48 8.11 -2.39 -0.02 1.46 16 25 H 0.07 2.12 5.59 -2.39 -0.01 2.11 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.03 1.49 3.22 -2.39 -0.01 1.49 16 29 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.06 2.33 7.87 -2.39 -0.02 2.32 16 32 H 0.09 2.17 7.79 -2.38 -0.02 2.15 16 33 H 0.06 1.19 8.02 -2.39 -0.02 1.18 16 34 H 0.10 2.05 8.12 -2.39 -0.02 2.03 16 35 H 0.12 1.52 8.12 -2.39 -0.02 1.50 16 36 H 0.11 1.77 8.12 -2.39 -0.02 1.75 16 37 H 0.11 2.07 8.02 -2.39 -0.02 2.05 16 38 H 0.08 1.49 7.43 -2.39 -0.02 1.47 16 39 H 0.07 2.12 7.49 -2.39 -0.02 2.11 16 40 H 0.10 2.54 6.96 -2.39 -0.02 2.52 16 Total: -1.00 -64.83 311.25 -1.37 -66.20 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.94 Total: 12.38 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 4.01 Total: -19.17 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -9.53 Total: -98.96 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 1.54 Total: -7.16 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.67 Total: 46.71 kcal Total: -64.83 -1.37 -66.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.683 kcal (2) G-P(sol) polarization free energy of solvation -64.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds