Wall clock time and date at job start Mon Mar 30 2020 02:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46859 * 2 1 4 4 H 1.08997 * 109.47485 * 304.48904 * 3 2 1 5 5 C 1.50704 * 109.46981 * 184.48741 * 3 2 1 6 6 H 1.07998 * 120.00113 * 305.02508 * 5 3 2 7 7 C 1.37885 * 119.99887 * 125.01695 * 5 3 2 8 8 N 1.31513 * 119.99678 * 171.38741 * 7 5 3 9 9 Si 1.86803 * 119.99831 * 351.39433 * 7 5 3 10 10 H 1.48493 * 109.47163 * 91.39778 * 9 7 5 11 11 H 1.48499 * 109.46676 * 211.39623 * 9 7 5 12 12 H 1.48498 * 109.46920 * 331.39109 * 9 7 5 13 13 N 1.46907 * 109.47292 * 64.49224 * 3 2 1 14 14 C 1.47958 * 110.99747 * 169.51563 * 13 3 2 15 15 C 1.53943 * 86.17665 * 222.41439 * 14 13 3 16 16 N 1.46907 * 113.72963 * 138.08199 * 15 14 13 17 17 C 1.47898 * 110.99429 * 176.90114 * 16 15 14 18 18 C 1.54000 * 107.05465 * 214.15064 * 17 16 15 19 19 C 1.54591 * 105.13820 * 1.22830 * 18 17 16 20 20 F 1.39903 * 110.72065 * 140.31059 * 19 18 17 21 21 F 1.39892 * 110.72514 * 263.59291 * 19 18 17 22 22 C 1.48527 * 110.99958 * 59.50277 * 16 15 14 23 23 C 1.48189 * 111.07106 * 70.08018 * 13 3 2 24 24 H 1.08993 * 109.46673 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46832 * 299.99838 * 1 2 3 26 26 H 1.09001 * 109.46856 * 60.00058 * 1 2 3 27 27 H 1.09000 * 109.46832 * 240.00161 * 2 1 3 28 28 H 1.09001 * 109.46856 * 119.99942 * 2 1 3 29 29 H 0.97001 * 119.99539 * 180.02562 * 8 7 5 30 30 H 1.08996 * 113.75829 * 108.10139 * 14 13 3 31 31 H 1.08990 * 113.76285 * 336.72982 * 14 13 3 32 32 H 1.08996 * 113.73615 * 269.25847 * 15 14 13 33 33 H 1.09001 * 109.91670 * 94.80507 * 17 16 15 34 34 H 1.08998 * 109.92109 * 333.50795 * 17 16 15 35 35 H 1.09007 * 110.30364 * 120.14139 * 18 17 16 36 36 H 1.09003 * 110.31310 * 242.30754 * 18 17 16 37 37 H 1.08996 * 110.67220 * 41.28798 * 22 16 15 38 38 H 1.08997 * 110.81428 * 278.21960 * 22 16 15 39 39 H 1.09000 * 113.75881 * 23.24248 * 23 13 3 40 40 H 1.08995 * 113.82550 * 251.81470 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6125 1.9790 -0.8470 5 6 3.5430 1.4440 -0.1112 6 1 4.1375 0.8879 0.5986 7 6 4.1590 2.1551 -1.1191 8 7 5.4664 2.2973 -1.1192 9 14 3.1364 2.9168 -2.4844 10 1 2.7664 4.3052 -2.1099 11 1 3.9262 2.9370 -3.7418 12 1 1.9040 2.1134 -2.6867 13 7 1.6409 2.1030 1.2500 14 6 2.3214 3.4082 1.4007 15 6 2.5261 3.0148 2.8749 16 7 3.8590 3.3470 3.3958 17 6 3.9650 3.0119 4.8324 18 6 4.8824 4.0683 5.4760 19 6 5.2581 5.0310 4.3264 20 9 5.2666 6.3566 4.7736 21 9 6.4966 4.6849 3.7756 22 6 4.1195 4.8061 3.2999 23 6 2.3906 1.5553 2.4050 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8997 2.7979 -1.8281 30 1 1.6626 4.2654 1.2624 31 1 3.2493 3.4876 0.8346 32 1 1.7199 3.3408 3.5320 33 1 4.4008 2.0199 4.9512 34 1 2.9788 3.0450 5.2953 35 1 4.3487 4.6054 6.2602 36 1 5.7771 3.5958 5.8816 37 1 3.2323 5.3745 3.5789 38 1 4.4477 5.0758 2.2961 39 1 3.3389 1.0917 2.1330 40 1 1.7871 0.9348 3.0674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:33 Heat of formation + Delta-G solvation = -54.929481 kcal Electronic energy + Delta-G solvation = -22736.905716 eV Core-core repulsion = 19223.539159 eV Total energy + Delta-G solvation = -3513.366557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.155 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.69908 -46.85353 -39.66031 -37.37305 -33.74744 -32.10458 -30.48686 -28.74825 -27.77857 -25.21767 -24.94881 -22.69716 -21.77390 -21.15586 -19.65223 -18.55008 -17.45347 -17.08655 -16.79353 -15.80432 -15.31886 -15.16828 -14.58298 -14.21261 -14.08374 -13.84337 -13.39993 -13.18954 -13.06131 -12.88687 -12.70205 -12.38703 -12.23334 -11.90164 -11.81555 -11.66034 -11.46269 -11.23568 -10.88133 -10.78897 -10.63936 -10.26864 -9.98446 -9.92454 -9.70457 -9.44735 -9.12446 -8.60586 -8.21247 -7.52454 -6.13609 -4.15138 3.22609 3.32842 3.34832 3.62226 3.95375 4.07731 4.33390 4.34634 4.64155 5.02892 5.05674 5.07527 5.24612 5.26549 5.48817 5.55428 5.66931 5.77726 5.82967 5.89184 5.94965 6.03364 6.08861 6.22328 6.35525 6.48514 6.56774 6.69808 6.76841 6.82153 6.89021 6.94457 7.08272 7.29906 7.43703 7.52457 7.63805 8.18094 8.45080 8.92525 9.48433 10.97593 Molecular weight = 274.16amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.006490 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.598961 B = 4313.477657 C = 5154.816187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C 0.137 3.863 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.081 3.919 8 N -0.884 5.884 9 Si 0.866 3.134 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.488 5.488 14 C 0.014 3.986 15 C 0.039 3.961 16 N -0.486 5.486 17 C 0.038 3.962 18 C -0.166 4.166 19 C 0.279 3.721 20 F -0.200 7.200 21 F -0.181 7.181 22 C 0.007 3.993 23 C 0.029 3.971 24 H 0.033 0.967 25 H 0.057 0.943 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.264 0.736 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 3.331 11.154 12.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C 0.030 3.970 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.123 4.123 8 N -0.520 5.520 9 Si 0.694 3.306 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.212 5.212 14 C -0.115 4.115 15 C -0.070 4.070 16 N -0.211 5.211 17 C -0.090 4.090 18 C -0.205 4.205 19 C 0.242 3.758 20 F -0.181 7.181 21 F -0.162 7.162 22 C -0.122 4.122 23 C -0.101 4.101 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.769 3.070 10.692 12.103 hybrid contribution 0.031 1.029 -0.482 1.136 sum -4.739 4.099 10.210 11.980 Atomic orbital electron populations 1.21763 0.97813 0.99223 1.01383 1.21515 0.93438 0.98460 1.00679 1.20226 0.94980 0.91723 0.90077 0.93361 1.21368 0.90081 1.31340 1.14535 0.90183 1.25092 0.94658 0.95228 0.97327 1.69945 1.08674 1.40380 1.33013 0.87025 0.80849 0.80084 0.82653 1.20195 1.21469 1.18888 1.68873 1.44756 1.02913 1.04632 1.23960 1.00393 0.93834 0.93283 1.23884 0.87097 0.99604 0.96382 1.65099 1.29482 1.12204 1.14311 1.22874 0.98255 0.99309 0.88607 1.23422 1.02608 0.97362 0.97110 1.21774 0.82756 0.77755 0.93494 1.92983 1.96857 1.38035 1.90208 1.93057 1.44729 1.91654 1.86740 1.24002 0.95900 0.91672 1.00598 1.23782 0.99434 0.93524 0.93313 0.94815 0.92405 0.94074 0.92775 0.93280 0.92629 0.92298 0.87326 0.91983 0.89183 0.92907 0.88740 0.88501 0.91220 0.87295 0.88274 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.80 37.16 0.36 -2.16 16 2 C -0.10 -2.08 5.39 -26.73 -0.14 -2.23 16 3 C 0.14 3.09 2.00 -68.86 -0.14 2.95 16 4 H 0.05 1.16 4.58 -51.93 -0.24 0.92 16 5 C -0.53 -13.87 6.28 -34.44 -0.22 -14.09 16 6 H 0.08 2.30 6.52 -52.49 -0.34 1.96 16 7 C 0.08 2.21 4.78 -17.82 -0.09 2.13 16 8 N -0.88 -25.78 13.96 55.43 0.77 -25.01 16 9 Si 0.87 20.87 27.21 -169.99 -4.63 16.24 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.26 -6.21 6.46 56.52 0.36 -5.84 16 13 N -0.49 -9.91 5.70 -231.63 -1.32 -11.23 16 14 C 0.01 0.28 6.85 -2.76 -0.02 0.27 16 15 C 0.04 0.65 3.19 -69.40 -0.22 0.43 16 16 N -0.49 -8.00 5.24 -223.90 -1.17 -9.17 16 17 C 0.04 0.48 6.70 -2.75 -0.02 0.46 16 18 C -0.17 -1.92 6.55 -25.37 -0.17 -2.09 16 19 C 0.28 4.08 2.67 -24.87 -0.07 4.01 16 20 F -0.20 -2.88 17.19 2.25 0.04 -2.84 16 21 F -0.18 -3.17 17.19 2.25 0.04 -3.13 16 22 C 0.01 0.11 5.54 -1.90 -0.01 0.10 16 23 C 0.03 0.53 6.64 -2.63 -0.02 0.52 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 1.00 7.74 -51.93 -0.40 0.60 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.98 7.41 -51.93 -0.38 0.59 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.11 2.56 5.86 -51.93 -0.30 2.26 16 32 H 0.06 0.95 7.84 -51.93 -0.41 0.55 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 0.59 7.58 -51.93 -0.39 0.20 16 35 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 36 H 0.10 1.03 8.12 -51.93 -0.42 0.61 16 37 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 38 H 0.11 1.86 8.13 -51.93 -0.42 1.44 16 39 H 0.10 2.16 5.63 -51.93 -0.29 1.87 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 316.23 15.07 4.77 4.77 Total: -1.00 -28.27 316.23 -8.39 -36.66 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.15 Total: 3.41 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -0.74 Total: -9.69 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -1.72 Total: -45.41 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 0.08 Total: -5.98 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.63 Total: 16.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.27 -8.39 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.269 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds