Wall clock time and date at job start Mon Mar 30 2020 02:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46859 * 2 1 4 4 H 1.08997 * 109.47485 * 304.48904 * 3 2 1 5 5 C 1.50704 * 109.46981 * 184.48741 * 3 2 1 6 6 H 1.07998 * 120.00113 * 305.02508 * 5 3 2 7 7 C 1.37885 * 119.99887 * 125.01695 * 5 3 2 8 8 N 1.31513 * 119.99678 * 171.38741 * 7 5 3 9 9 Si 1.86803 * 119.99831 * 351.39433 * 7 5 3 10 10 H 1.48493 * 109.47163 * 91.39778 * 9 7 5 11 11 H 1.48499 * 109.46676 * 211.39623 * 9 7 5 12 12 H 1.48498 * 109.46920 * 331.39109 * 9 7 5 13 13 N 1.46907 * 109.47292 * 64.49224 * 3 2 1 14 14 C 1.47958 * 110.99747 * 169.51563 * 13 3 2 15 15 C 1.53943 * 86.17665 * 222.41439 * 14 13 3 16 16 N 1.46907 * 113.72963 * 138.08199 * 15 14 13 17 17 C 1.47898 * 110.99429 * 176.90114 * 16 15 14 18 18 C 1.54000 * 107.05465 * 214.15064 * 17 16 15 19 19 C 1.54591 * 105.13820 * 1.22830 * 18 17 16 20 20 F 1.39903 * 110.72065 * 140.31059 * 19 18 17 21 21 F 1.39892 * 110.72514 * 263.59291 * 19 18 17 22 22 C 1.48527 * 110.99958 * 59.50277 * 16 15 14 23 23 C 1.48189 * 111.07106 * 70.08018 * 13 3 2 24 24 H 1.08993 * 109.46673 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46832 * 299.99838 * 1 2 3 26 26 H 1.09001 * 109.46856 * 60.00058 * 1 2 3 27 27 H 1.09000 * 109.46832 * 240.00161 * 2 1 3 28 28 H 1.09001 * 109.46856 * 119.99942 * 2 1 3 29 29 H 0.97001 * 119.99539 * 180.02562 * 8 7 5 30 30 H 1.08996 * 113.75829 * 108.10139 * 14 13 3 31 31 H 1.08990 * 113.76285 * 336.72982 * 14 13 3 32 32 H 1.08996 * 113.73615 * 269.25847 * 15 14 13 33 33 H 1.09001 * 109.91670 * 94.80507 * 17 16 15 34 34 H 1.08998 * 109.92109 * 333.50795 * 17 16 15 35 35 H 1.09007 * 110.30364 * 120.14139 * 18 17 16 36 36 H 1.09003 * 110.31310 * 242.30754 * 18 17 16 37 37 H 1.08996 * 110.67220 * 41.28798 * 22 16 15 38 38 H 1.08997 * 110.81428 * 278.21960 * 22 16 15 39 39 H 1.09000 * 113.75881 * 23.24248 * 23 13 3 40 40 H 1.08995 * 113.82550 * 251.81470 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6125 1.9790 -0.8470 5 6 3.5430 1.4440 -0.1112 6 1 4.1375 0.8879 0.5986 7 6 4.1590 2.1551 -1.1191 8 7 5.4664 2.2973 -1.1192 9 14 3.1364 2.9168 -2.4844 10 1 2.7664 4.3052 -2.1099 11 1 3.9262 2.9370 -3.7418 12 1 1.9040 2.1134 -2.6867 13 7 1.6409 2.1030 1.2500 14 6 2.3214 3.4082 1.4007 15 6 2.5261 3.0148 2.8749 16 7 3.8590 3.3470 3.3958 17 6 3.9650 3.0119 4.8324 18 6 4.8824 4.0683 5.4760 19 6 5.2581 5.0310 4.3264 20 9 5.2666 6.3566 4.7736 21 9 6.4966 4.6849 3.7756 22 6 4.1195 4.8061 3.2999 23 6 2.3906 1.5553 2.4050 24 1 -0.3632 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8997 2.7979 -1.8281 30 1 1.6626 4.2654 1.2624 31 1 3.2493 3.4876 0.8346 32 1 1.7199 3.3408 3.5320 33 1 4.4008 2.0199 4.9512 34 1 2.9788 3.0450 5.2953 35 1 4.3487 4.6054 6.2602 36 1 5.7771 3.5958 5.8816 37 1 3.2323 5.3745 3.5789 38 1 4.4477 5.0758 2.2961 39 1 3.3389 1.0917 2.1330 40 1 1.7871 0.9348 3.0674 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:32 Heat of formation + Delta-G solvation = -75.211001 kcal Electronic energy + Delta-G solvation = -22737.785189 eV Core-core repulsion = 19223.539159 eV Total energy + Delta-G solvation = -3514.246030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.155 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.90084 -48.08353 -41.15595 -38.68387 -35.40938 -34.07186 -31.70633 -29.98775 -29.38948 -26.77452 -26.62665 -24.29644 -23.05788 -22.25241 -21.15625 -20.27790 -18.96566 -18.57698 -18.20369 -17.09552 -16.88170 -16.46132 -16.11493 -15.62764 -15.52813 -15.12336 -14.81940 -14.71311 -14.45881 -14.36070 -14.14732 -13.89287 -13.74116 -13.58835 -13.25590 -12.87823 -12.75105 -12.69650 -12.52342 -12.30635 -11.85717 -11.78606 -11.70794 -11.58768 -11.37473 -11.11372 -10.91157 -10.67852 -9.39567 -9.28286 -8.26352 -6.29095 1.28602 1.32969 1.41100 2.31483 2.45809 2.82561 2.93300 3.08891 3.22423 3.54889 3.60999 3.67615 4.08034 4.16187 4.25340 4.28203 4.44869 4.51395 4.55038 4.60261 4.68766 4.70455 4.78399 4.85371 4.90348 5.00264 5.01481 5.16759 5.22350 5.24392 5.33243 5.50667 5.60786 5.65544 5.76840 5.85151 6.15014 6.32139 6.45977 6.79469 7.36898 8.88585 Molecular weight = 274.16amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.006490 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.598961 B = 4313.477657 C = 5154.816187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 C 0.139 3.861 4 H 0.039 0.961 5 C -0.517 4.517 6 H 0.041 0.959 7 C 0.030 3.970 8 N -0.934 5.934 9 Si 0.921 3.079 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.250 1.250 13 N -0.479 5.479 14 C 0.005 3.995 15 C 0.062 3.938 16 N -0.521 5.521 17 C 0.038 3.962 18 C -0.153 4.153 19 C 0.271 3.729 20 F -0.198 7.198 21 F -0.205 7.205 22 C 0.009 3.991 23 C 0.030 3.970 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.262 0.738 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.293 3.596 12.877 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C 0.032 3.968 4 H 0.057 0.943 5 C -0.556 4.556 6 H 0.059 0.941 7 C -0.169 4.169 8 N -0.574 5.574 9 Si 0.747 3.253 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.174 1.174 13 N -0.202 5.202 14 C -0.124 4.124 15 C -0.046 4.046 16 N -0.246 5.246 17 C -0.089 4.089 18 C -0.191 4.191 19 C 0.234 3.766 20 F -0.179 7.179 21 F -0.186 7.186 22 C -0.119 4.119 23 C -0.100 4.100 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.492 3.328 12.431 14.891 hybrid contribution 0.912 0.920 -0.940 1.600 sum -6.581 4.248 11.491 13.906 Atomic orbital electron populations 1.21649 0.94892 1.00980 1.01586 1.21449 0.95962 0.96478 1.00180 1.20153 0.92281 0.93413 0.90994 0.94296 1.21484 0.91945 1.29390 1.12820 0.94102 1.25767 0.95367 0.96126 0.99680 1.70088 1.10589 1.42526 1.34147 0.86133 0.79765 0.79704 0.79719 1.19506 1.21747 1.17394 1.68813 1.44442 1.03061 1.03876 1.23874 0.98806 0.94260 0.95458 1.23685 0.88468 0.97430 0.95039 1.64933 1.29362 1.13088 1.17260 1.22953 1.00020 0.99503 0.86452 1.23431 1.03086 0.96288 0.96293 1.22057 0.81426 0.78519 0.94594 1.92982 1.96759 1.38077 1.90094 1.93010 1.46338 1.91906 1.87356 1.23913 0.97176 0.91467 0.99391 1.23691 0.97920 0.95136 0.93206 0.92332 0.91936 0.94068 0.93905 0.93315 0.92917 0.90566 0.91600 0.88741 0.89475 0.90149 0.85536 0.87633 0.88693 0.90435 0.92052 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 9.80 71.99 0.71 -3.56 16 2 C -0.10 -4.04 5.39 30.60 0.16 -3.88 16 3 C 0.14 6.24 2.00 44.17 0.09 6.33 16 4 H 0.04 1.83 4.58 -2.39 -0.01 1.82 16 5 C -0.52 -27.81 6.28 25.60 0.16 -27.65 16 6 H 0.04 2.49 6.52 -2.91 -0.02 2.47 16 7 C 0.03 1.69 4.78 84.66 0.40 2.10 16 8 N -0.93 -57.24 13.96 21.45 0.30 -56.94 16 9 Si 0.92 43.77 27.21 68.60 1.87 45.63 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.25 -11.20 6.46 99.48 0.64 -10.55 16 13 N -0.48 -18.78 5.70 -886.73 -5.05 -23.83 16 14 C 0.01 0.21 6.85 86.41 0.59 0.80 16 15 C 0.06 1.98 3.19 46.48 0.15 2.12 16 16 N -0.52 -16.63 5.24 -862.29 -4.52 -21.15 16 17 C 0.04 0.87 6.70 86.45 0.58 1.45 16 18 C -0.15 -3.09 6.55 31.47 0.21 -2.88 16 19 C 0.27 7.62 2.67 31.80 0.09 7.71 16 20 F -0.20 -5.41 17.19 44.97 0.77 -4.64 16 21 F -0.20 -7.32 17.19 44.97 0.77 -6.55 16 22 C 0.01 0.28 5.54 86.65 0.48 0.76 16 23 C 0.03 1.07 6.64 86.36 0.57 1.65 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 1.94 7.74 -2.39 -0.02 1.92 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 1.90 7.41 -2.39 -0.02 1.88 16 29 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.07 3.21 5.86 -2.39 -0.01 3.19 16 32 H 0.10 2.46 7.84 -2.39 -0.02 2.44 16 33 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 1.43 7.58 -2.39 -0.02 1.41 16 35 H 0.13 1.79 8.12 -2.38 -0.02 1.77 16 36 H 0.11 1.98 8.12 -2.39 -0.02 1.96 16 37 H 0.10 2.31 8.02 -2.39 -0.02 2.29 16 38 H 0.08 2.77 8.13 -2.39 -0.02 2.75 16 39 H 0.06 2.74 5.63 -2.39 -0.01 2.73 16 40 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -64.18 316.23 -0.71 -64.90 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.96 Total: 17.64 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 4.19 Total: -15.06 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -9.27 Total: -101.93 kcal Atomic # 9 Polarization: -12.73 SS G_CDS: 1.55 Total: -11.18 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.87 Total: 45.63 kcal Total: -64.18 -0.71 -64.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.316 kcal (2) G-P(sol) polarization free energy of solvation -64.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds