Wall clock time and date at job start Mon Mar 30 2020 03:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86793 * 120.00077 * 2 1 4 4 H 1.48503 * 109.47218 * 239.99776 * 3 2 1 5 5 H 1.48508 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47377 * 119.99920 * 3 2 1 7 7 C 1.40029 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99493 * 186.13895 * 7 2 1 9 9 C 1.41314 * 119.99841 * 6.13860 * 7 2 1 10 10 C 1.40592 * 119.78166 * 186.29495 * 9 7 2 11 11 C 1.38346 * 119.14780 * 180.02562 * 10 9 7 12 12 C 1.38639 * 118.68003 * 0.02562 * 11 10 9 13 13 C 1.39754 * 119.49066 * 0.02562 * 12 11 10 14 14 N 1.38824 * 119.58102 * 179.97438 * 13 12 11 15 15 C 1.47861 * 123.39475 * 142.81675 * 14 13 12 16 16 C 1.54147 * 116.37947 * 124.96918 * 15 14 13 17 17 C 1.56117 * 105.96322 * 300.81823 * 16 15 14 18 18 C 1.53826 * 107.12796 * 128.43677 * 17 16 15 19 19 C 1.54493 * 117.24067 * 299.69165 * 18 17 16 20 20 C 1.57819 * 104.70765 * 302.18666 * 19 18 17 21 21 C 1.55036 * 104.25103 * 131.45374 * 20 19 18 22 22 C 1.50060 * 123.39545 * 322.81626 * 14 13 12 23 23 N 1.31976 * 120.83285 * 0.25763 * 13 12 11 24 24 H 0.97003 * 119.99783 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.42517 * 0.02562 * 10 9 7 26 26 H 1.08000 * 120.65835 * 179.97438 * 11 10 9 27 27 H 1.08002 * 120.25060 * 180.02562 * 12 11 10 28 28 H 1.09008 * 108.06957 * 3.23319 * 15 14 13 29 29 H 1.08993 * 108.07399 * 246.71277 * 15 14 13 30 30 H 1.08995 * 110.16583 * 59.96652 * 16 15 14 31 31 H 1.08995 * 110.16244 * 181.67265 * 16 15 14 32 32 H 1.08994 * 109.92885 * 248.05044 * 17 16 15 33 33 H 1.08999 * 109.92917 * 9.25178 * 17 16 15 34 34 H 1.08999 * 107.91587 * 177.68216 * 18 17 16 35 35 H 1.09005 * 107.77420 * 61.58179 * 18 17 16 36 36 H 1.08992 * 110.38614 * 183.39498 * 19 18 17 37 37 H 1.09000 * 110.52712 * 61.04778 * 19 18 17 38 38 H 1.08997 * 110.46905 * 12.77098 * 20 19 18 39 39 H 1.09002 * 110.46915 * 250.13586 * 20 19 18 40 40 H 1.08996 * 108.21754 * 182.06009 * 21 20 19 41 41 H 1.09002 * 108.06286 * 65.22289 * 21 20 19 42 42 H 1.08997 * 109.90106 * 71.22614 * 22 14 13 43 43 H 1.08999 * 109.89991 * 192.35889 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6963 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0829 -1.2153 0.1006 9 6 1.3070 -2.4330 -0.1298 10 6 1.9957 -3.6514 0.0040 11 6 1.2970 -4.8383 -0.1266 12 6 -0.0637 -4.7842 -0.3865 13 6 -0.6917 -3.5418 -0.5098 14 7 -2.0541 -3.4855 -0.7705 15 6 -2.9533 -2.4678 -0.1855 16 6 -3.7858 -1.6360 -1.1811 17 6 -2.7550 -0.9167 -2.1069 18 6 -3.1688 -1.2099 -3.5592 19 6 -3.2012 -2.6902 -4.0002 20 6 -1.7370 -3.2182 -3.7393 21 6 -1.9424 -4.5483 -2.9697 22 6 -2.7627 -4.4512 -1.6745 23 7 -0.0049 -2.4215 -0.3870 24 1 -0.4850 0.8401 0.0004 25 1 3.0566 -3.6606 0.2061 26 1 1.8018 -5.7881 -0.0289 27 1 -0.6340 -5.6952 -0.4928 28 1 -2.3473 -1.7808 0.4053 29 1 -3.6418 -2.9738 0.4911 30 1 -4.4289 -2.2892 -1.7708 31 1 -4.3870 -0.9011 -0.6459 32 1 -2.7750 0.1571 -1.9214 33 1 -1.7543 -1.3079 -1.9232 34 1 -2.4811 -0.6789 -4.2175 35 1 -4.1640 -0.7925 -3.7123 36 1 -3.4489 -2.7656 -5.0589 37 1 -3.9192 -3.2514 -3.4023 38 1 -1.1785 -2.5076 -3.1301 39 1 -1.2233 -3.3995 -4.6834 40 1 -0.9615 -4.9538 -2.7222 41 1 -2.4411 -5.2513 -3.6369 42 1 -2.8218 -5.4299 -1.1985 43 1 -3.7648 -4.0845 -1.8966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324720103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:43 Heat of formation + Delta-G solvation = 38.214373 kcal Electronic energy + Delta-G solvation = -22760.826077 eV Core-core repulsion = 19805.728070 eV Total energy + Delta-G solvation = -2955.098007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -38.64339 -37.08041 -34.25676 -33.31449 -33.06009 -30.39225 -29.75550 -27.55452 -26.86236 -25.38493 -24.18497 -21.89370 -21.13782 -21.01583 -19.07591 -18.94899 -17.26744 -16.05665 -15.14582 -15.05962 -14.60014 -14.33980 -14.21316 -13.75866 -13.38368 -13.14416 -13.06526 -12.51786 -12.18831 -11.97647 -11.77485 -11.63183 -11.18699 -11.12056 -11.01283 -10.94530 -10.69151 -10.61621 -10.55281 -10.29776 -10.01967 -9.92703 -9.86183 -9.76383 -9.41945 -9.27843 -8.45887 -7.82544 -7.44158 -6.51169 -6.21502 -4.41663 2.88806 3.11305 3.14282 3.20632 3.30519 3.98629 4.00475 4.83703 5.12489 5.25539 5.33412 5.53829 5.59033 5.68122 5.75543 5.82610 5.85685 5.96131 6.06815 6.15882 6.21596 6.22683 6.24563 6.31194 6.43635 6.49998 6.60020 6.63274 6.66861 6.72849 6.78480 6.87381 6.87981 6.92437 6.99252 7.13502 7.26506 7.47511 7.65491 7.85231 7.97128 8.06619 8.37247 8.67434 8.85713 9.19343 10.25600 10.41629 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.008276 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.467700 B = 3382.599039 C = 4373.263350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.077 3.923 3 Si 0.900 3.100 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.437 4.437 8 H 0.080 0.920 9 C 0.288 3.712 10 C -0.310 4.310 11 C -0.039 4.039 12 C -0.346 4.346 13 C 0.427 3.573 14 N -0.626 5.626 15 C 0.132 3.868 16 C -0.132 4.132 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.138 4.138 22 C 0.139 3.861 23 N -0.516 5.516 24 H 0.270 0.730 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.024 0.976 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.113 0.887 34 H 0.043 0.957 35 H 0.035 0.965 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.221 -2.440 -4.510 8.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.149 4.149 3 Si 0.725 3.275 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.098 0.902 9 C 0.161 3.839 10 C -0.333 4.333 11 C -0.064 4.064 12 C -0.372 4.372 13 C 0.190 3.810 14 N -0.348 5.348 15 C 0.007 3.993 16 C -0.170 4.170 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.176 4.176 22 C 0.016 3.984 23 N -0.236 5.236 24 H 0.081 0.919 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.132 0.868 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.841 -1.496 -4.578 9.202 hybrid contribution 0.777 -0.095 -0.047 0.785 sum -7.064 -1.590 -4.625 8.591 Atomic orbital electron populations 1.70071 1.06894 1.27410 1.28984 1.25947 0.94829 1.00539 0.93536 0.86523 0.80223 0.81061 0.79737 1.19138 1.20421 1.19187 1.19483 0.94478 0.89603 1.43309 0.90229 1.18201 0.87186 0.91660 0.86807 1.21570 0.99197 0.93584 1.18955 1.20619 0.93582 0.96369 0.95803 1.20749 0.95584 0.95996 1.24822 1.18012 0.83030 0.89472 0.90437 1.46791 1.03396 1.31409 1.53187 1.21422 0.92502 0.91234 0.94109 1.22731 0.97384 0.98480 0.98439 1.22447 1.02334 0.99144 0.91860 1.21965 0.99535 0.95974 0.97981 1.22831 0.97515 0.96147 0.99252 1.22863 0.96027 0.97499 0.98949 1.22329 1.01275 0.97822 0.96217 1.22002 0.95061 0.92502 0.88880 1.68207 1.07557 1.25468 1.22325 0.91915 0.88887 0.89128 0.89453 0.89497 0.95824 0.92675 0.92088 0.92953 0.86830 0.93816 0.94579 0.92787 0.91535 0.89479 0.92882 0.91811 0.93331 0.93333 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.83 11.54 55.55 0.64 -17.19 16 2 C 0.08 1.90 5.48 -17.34 -0.09 1.81 16 3 Si 0.90 18.52 29.56 -169.99 -5.03 13.50 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.44 -11.53 9.13 -37.74 -0.34 -11.87 16 8 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 9 C 0.29 7.75 6.53 -85.00 -0.55 7.20 16 10 C -0.31 -7.73 9.83 -38.65 -0.38 -8.11 16 11 C -0.04 -0.90 10.15 -39.39 -0.40 -1.30 16 12 C -0.35 -7.86 8.25 -38.87 -0.32 -8.18 16 13 C 0.43 9.96 6.01 -155.32 -0.93 9.03 16 14 N -0.63 -12.24 2.24 -168.68 -0.38 -12.62 16 15 C 0.13 2.44 5.24 -2.70 -0.01 2.42 16 16 C -0.13 -2.08 5.88 -24.46 -0.14 -2.23 16 17 C -0.12 -2.13 5.82 -24.63 -0.14 -2.28 16 18 C -0.12 -1.79 4.75 -25.52 -0.12 -1.92 16 19 C -0.12 -1.71 5.90 -23.31 -0.14 -1.85 16 20 C -0.12 -1.93 6.09 -23.02 -0.14 -2.07 16 21 C -0.14 -2.21 4.74 -25.34 -0.12 -2.33 16 22 C 0.14 2.22 5.46 -1.73 -0.01 2.22 16 23 N -0.52 -13.35 6.67 -10.33 -0.07 -13.42 16 24 H 0.27 6.26 8.29 -40.82 -0.34 5.92 16 25 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 26 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.09 1.83 7.56 -52.49 -0.40 1.43 16 28 H 0.09 1.91 7.59 -51.92 -0.39 1.52 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.79 5.10 -51.93 -0.27 0.53 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.11 2.43 4.53 -51.93 -0.24 2.19 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.90 4.48 -51.93 -0.23 0.67 16 38 H 0.09 1.79 5.44 -51.93 -0.28 1.51 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.18 6.48 -51.93 -0.34 0.84 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.75 7.92 -51.93 -0.41 0.34 16 43 H 0.07 1.04 4.54 -51.93 -0.24 0.80 16 LS Contribution 321.62 15.07 4.85 4.85 Total: -1.00 -26.61 321.62 -10.41 -37.01 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.56 Total: 7.33 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -3.86 Total: -19.46 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.19 Total: -43.23 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.61 -10.41 -37.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324720103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.227 kcal (2) G-P(sol) polarization free energy of solvation -26.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds