Wall clock time and date at job start Mon Mar 30 2020 03:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86793 * 120.00077 * 2 1 4 4 H 1.48503 * 109.47218 * 239.99776 * 3 2 1 5 5 H 1.48508 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47377 * 119.99920 * 3 2 1 7 7 C 1.40029 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99493 * 186.13895 * 7 2 1 9 9 C 1.41314 * 119.99841 * 6.13860 * 7 2 1 10 10 C 1.40592 * 119.78166 * 186.29495 * 9 7 2 11 11 C 1.38346 * 119.14780 * 180.02562 * 10 9 7 12 12 C 1.38639 * 118.68003 * 0.02562 * 11 10 9 13 13 C 1.39754 * 119.49066 * 0.02562 * 12 11 10 14 14 N 1.38824 * 119.58102 * 179.97438 * 13 12 11 15 15 C 1.47861 * 123.39475 * 142.81675 * 14 13 12 16 16 C 1.54147 * 116.37947 * 124.96918 * 15 14 13 17 17 C 1.56117 * 105.96322 * 300.81823 * 16 15 14 18 18 C 1.53826 * 107.12796 * 128.43677 * 17 16 15 19 19 C 1.54493 * 117.24067 * 299.69165 * 18 17 16 20 20 C 1.57819 * 104.70765 * 302.18666 * 19 18 17 21 21 C 1.55036 * 104.25103 * 131.45374 * 20 19 18 22 22 C 1.50060 * 123.39545 * 322.81626 * 14 13 12 23 23 N 1.31976 * 120.83285 * 0.25763 * 13 12 11 24 24 H 0.97003 * 119.99783 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.42517 * 0.02562 * 10 9 7 26 26 H 1.08000 * 120.65835 * 179.97438 * 11 10 9 27 27 H 1.08002 * 120.25060 * 180.02562 * 12 11 10 28 28 H 1.09008 * 108.06957 * 3.23319 * 15 14 13 29 29 H 1.08993 * 108.07399 * 246.71277 * 15 14 13 30 30 H 1.08995 * 110.16583 * 59.96652 * 16 15 14 31 31 H 1.08995 * 110.16244 * 181.67265 * 16 15 14 32 32 H 1.08994 * 109.92885 * 248.05044 * 17 16 15 33 33 H 1.08999 * 109.92917 * 9.25178 * 17 16 15 34 34 H 1.08999 * 107.91587 * 177.68216 * 18 17 16 35 35 H 1.09005 * 107.77420 * 61.58179 * 18 17 16 36 36 H 1.08992 * 110.38614 * 183.39498 * 19 18 17 37 37 H 1.09000 * 110.52712 * 61.04778 * 19 18 17 38 38 H 1.08997 * 110.46905 * 12.77098 * 20 19 18 39 39 H 1.09002 * 110.46915 * 250.13586 * 20 19 18 40 40 H 1.08996 * 108.21754 * 182.06009 * 21 20 19 41 41 H 1.09002 * 108.06286 * 65.22289 * 21 20 19 42 42 H 1.08997 * 109.90106 * 71.22614 * 22 14 13 43 43 H 1.08999 * 109.89991 * 192.35889 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0953 1.6963 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0829 -1.2153 0.1006 9 6 1.3070 -2.4330 -0.1298 10 6 1.9957 -3.6514 0.0040 11 6 1.2970 -4.8383 -0.1266 12 6 -0.0637 -4.7842 -0.3865 13 6 -0.6917 -3.5418 -0.5098 14 7 -2.0541 -3.4855 -0.7705 15 6 -2.9533 -2.4678 -0.1855 16 6 -3.7858 -1.6360 -1.1811 17 6 -2.7550 -0.9167 -2.1069 18 6 -3.1688 -1.2099 -3.5592 19 6 -3.2012 -2.6902 -4.0002 20 6 -1.7370 -3.2182 -3.7393 21 6 -1.9424 -4.5483 -2.9697 22 6 -2.7627 -4.4512 -1.6745 23 7 -0.0049 -2.4215 -0.3870 24 1 -0.4850 0.8401 0.0004 25 1 3.0566 -3.6606 0.2061 26 1 1.8018 -5.7881 -0.0289 27 1 -0.6340 -5.6952 -0.4928 28 1 -2.3473 -1.7808 0.4053 29 1 -3.6418 -2.9738 0.4911 30 1 -4.4289 -2.2892 -1.7708 31 1 -4.3870 -0.9011 -0.6459 32 1 -2.7750 0.1571 -1.9214 33 1 -1.7543 -1.3079 -1.9232 34 1 -2.4811 -0.6789 -4.2175 35 1 -4.1640 -0.7925 -3.7123 36 1 -3.4489 -2.7656 -5.0589 37 1 -3.9192 -3.2514 -3.4023 38 1 -1.1785 -2.5076 -3.1301 39 1 -1.2233 -3.3995 -4.6834 40 1 -0.9615 -4.9538 -2.7222 41 1 -2.4411 -5.2513 -3.6369 42 1 -2.8218 -5.4299 -1.1985 43 1 -3.7648 -4.0845 -1.8966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324720103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:42 Heat of formation + Delta-G solvation = 26.939601 kcal Electronic energy + Delta-G solvation = -22761.314988 eV Core-core repulsion = 19805.728070 eV Total energy + Delta-G solvation = -2955.586918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.30602 -38.62149 -35.84007 -34.96139 -34.48186 -32.20827 -31.49928 -29.05322 -28.23493 -27.19046 -25.61930 -23.46078 -22.84141 -22.54042 -20.50290 -20.38490 -19.12014 -17.63080 -16.71486 -16.47431 -16.29722 -16.06211 -15.81299 -15.16778 -14.75204 -14.72738 -14.53074 -14.13274 -13.76437 -13.52262 -13.41177 -12.90799 -12.81780 -12.72918 -12.57616 -12.43417 -12.32983 -12.20338 -11.98803 -11.80754 -11.64722 -11.33293 -11.26071 -11.11366 -11.02166 -10.71507 -10.21783 -9.67506 -9.30211 -8.29468 -7.95037 -6.37868 1.09010 1.36819 1.41147 1.50463 1.58069 2.26173 2.47023 2.96207 3.86569 4.00758 4.01482 4.09698 4.28196 4.29451 4.35860 4.43127 4.49379 4.56868 4.61511 4.72886 4.80921 4.92157 4.93733 5.00491 5.02934 5.04353 5.08870 5.12784 5.19397 5.21078 5.30129 5.37073 5.37289 5.45323 5.49921 5.59036 5.63302 5.81552 6.01924 6.03905 6.17159 6.25474 6.63287 6.82459 6.97924 7.38804 8.40298 8.55771 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.008276 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.467700 B = 3382.599039 C = 4373.263350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.036 3.964 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.474 4.474 8 H 0.078 0.922 9 C 0.256 3.744 10 C -0.341 4.341 11 C -0.039 4.039 12 C -0.347 4.347 13 C 0.419 3.581 14 N -0.627 5.627 15 C 0.134 3.866 16 C -0.117 4.117 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.133 4.133 22 C 0.137 3.863 23 N -0.534 5.534 24 H 0.274 0.726 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.029 0.971 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.033 0.967 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.562 -3.132 -5.548 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.187 4.187 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.506 4.506 8 H 0.096 0.904 9 C 0.129 3.871 10 C -0.364 4.364 11 C -0.063 4.063 12 C -0.373 4.373 13 C 0.181 3.819 14 N -0.348 5.348 15 C 0.009 3.991 16 C -0.155 4.155 17 C -0.161 4.161 18 C -0.151 4.151 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.171 4.171 22 C 0.016 3.984 23 N -0.254 5.254 24 H 0.084 0.916 25 H 0.114 0.886 26 H 0.140 0.860 27 H 0.127 0.873 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.215 -2.214 -5.622 11.868 hybrid contribution 1.440 0.026 0.262 1.464 sum -8.775 -2.188 -5.360 10.513 Atomic orbital electron populations 1.70170 1.08020 1.28346 1.28827 1.26688 0.95721 1.03384 0.92921 0.85427 0.78870 0.76748 0.79595 1.19152 1.19350 1.18688 1.19760 0.94689 0.90824 1.45359 0.90428 1.18642 0.88235 0.92687 0.87521 1.21694 0.99611 0.94062 1.21005 1.20964 0.93882 0.96974 0.94501 1.21039 0.95778 0.96614 1.23833 1.18363 0.84653 0.89219 0.89646 1.46942 1.02167 1.32300 1.53417 1.21447 0.92013 0.90749 0.94844 1.22671 0.96697 0.98497 0.97655 1.22329 1.01215 0.98306 0.94226 1.21901 1.00216 0.97092 0.95883 1.22811 0.95701 0.94900 1.00965 1.22767 0.97476 0.96999 0.98348 1.22293 1.00083 0.97883 0.96880 1.22284 0.95721 0.92389 0.88049 1.68222 1.07350 1.26894 1.22976 0.91575 0.88641 0.86036 0.87344 0.93906 0.93984 0.90074 0.90633 0.94331 0.90471 0.95183 0.92337 0.90434 0.90020 0.93952 0.92597 0.94810 0.89987 0.92015 0.88226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.30 11.54 21.84 0.25 -38.05 16 2 C 0.04 1.85 5.48 85.29 0.47 2.32 16 3 Si 0.97 39.19 29.56 68.60 2.03 41.22 16 4 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.47 -26.39 9.13 23.46 0.21 -26.18 16 8 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 9 C 0.26 14.50 6.53 40.19 0.26 14.76 16 10 C -0.34 -17.67 9.83 22.87 0.22 -17.44 16 11 C -0.04 -1.79 10.15 22.39 0.23 -1.56 16 12 C -0.35 -15.70 8.25 22.73 0.19 -15.52 16 13 C 0.42 19.88 6.01 133.40 0.80 20.68 16 14 N -0.63 -24.04 2.24 -687.57 -1.54 -25.59 16 15 C 0.13 4.84 5.24 86.51 0.45 5.29 16 16 C -0.12 -3.44 5.88 32.06 0.19 -3.25 16 17 C -0.12 -4.32 5.82 31.95 0.19 -4.14 16 18 C -0.11 -3.26 4.75 31.38 0.15 -3.11 16 19 C -0.11 -2.68 5.90 32.81 0.19 -2.48 16 20 C -0.12 -3.81 6.09 33.00 0.20 -3.61 16 21 C -0.13 -3.97 4.74 31.50 0.15 -3.82 16 22 C 0.14 3.98 5.46 85.89 0.47 4.45 16 23 N -0.53 -28.87 6.67 -186.60 -1.24 -30.12 16 24 H 0.27 13.20 8.29 -92.71 -0.77 12.43 16 25 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 26 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 27 H 0.11 4.36 7.56 -2.91 -0.02 4.34 16 28 H 0.04 1.93 7.59 -2.38 -0.02 1.91 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.97 5.10 -2.39 -0.01 1.96 16 31 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 3.40 4.53 -2.39 -0.01 3.39 16 34 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.80 4.48 -2.39 -0.01 1.79 16 38 H 0.04 1.78 5.44 -2.39 -0.01 1.77 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.03 1.20 6.48 -2.39 -0.02 1.19 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.06 1.67 7.92 -2.39 -0.02 1.65 16 43 H 0.10 2.36 4.54 -2.39 -0.01 2.35 16 Total: -1.00 -61.63 321.62 4.86 -56.77 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.99 Total: 29.37 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 4.37 Total: -33.60 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -2.53 Total: -93.75 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -61.63 4.86 -56.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324720103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.709 kcal (2) G-P(sol) polarization free energy of solvation -61.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds