Wall clock time and date at job start Mon Mar 30 2020 01:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47346 * 131.62504 * 3 2 1 5 5 H 1.08996 * 109.47050 * 305.00310 * 4 3 2 6 6 C 1.52997 * 109.47338 * 184.99828 * 4 3 2 7 7 C 1.53000 * 109.47062 * 175.00342 * 6 4 3 8 8 O 1.42901 * 109.47169 * 180.02562 * 7 6 4 9 9 C 1.42901 * 114.00037 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.46402 * 64.99980 * 4 3 2 11 11 C 1.38816 * 119.99912 * 274.99780 * 10 4 3 12 12 C 1.39795 * 119.58938 * 0.02791 * 11 10 4 13 13 C 1.38592 * 119.49615 * 179.97438 * 12 11 10 14 14 C 1.38397 * 118.67826 * 359.97438 * 13 12 11 15 15 C 1.40559 * 119.14805 * 0.02562 * 14 13 12 16 16 C 1.41308 * 119.78129 * 180.28124 * 15 14 13 17 17 H 1.08008 * 120.00513 * 359.71838 * 16 15 14 18 18 C 1.40029 * 120.00282 * 179.72612 * 16 15 14 19 19 N 1.30752 * 119.99464 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00451 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47079 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47016 * 119.99677 * 20 18 16 23 23 H 1.48499 * 109.47220 * 239.99927 * 20 18 16 24 24 N 1.31956 * 119.58168 * 180.02562 * 11 10 4 25 25 H 4.44649 * 5.63361 * 180.02562 * 4 1 2 26 26 H 1.09011 * 109.47342 * 11.62959 * 3 2 1 27 27 H 1.09000 * 109.47685 * 251.62708 * 3 2 1 28 28 H 1.08999 * 109.47326 * 295.00744 * 6 4 3 29 29 H 1.09001 * 109.46844 * 55.00178 * 6 4 3 30 30 H 1.09007 * 109.47106 * 300.00137 * 7 6 4 31 31 H 1.08992 * 109.46922 * 59.99917 * 7 6 4 32 32 H 1.09000 * 109.47036 * 299.99444 * 9 8 7 33 33 H 1.09001 * 109.47280 * 60.00068 * 9 8 7 34 34 H 1.09001 * 109.47015 * 179.97438 * 9 8 7 35 35 H 0.97001 * 119.99871 * 95.00376 * 10 4 3 36 36 H 1.08001 * 120.25000 * 359.95393 * 12 11 10 37 37 H 1.07991 * 120.66389 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.42131 * 180.02562 * 14 13 12 39 39 H 0.97000 * 119.99838 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.9591 -1.0783 5 1 2.7211 0.6877 -2.0404 6 6 4.6805 0.8670 -1.1631 7 6 5.1797 1.7306 -2.3233 8 8 6.6039 1.6441 -2.4029 9 6 7.1751 2.4188 -3.4592 10 7 2.7674 2.3297 -0.7362 11 6 1.5134 2.8056 -1.0939 12 6 0.6276 1.9695 -1.7799 13 6 -0.6241 2.4465 -2.1356 14 6 -0.9605 3.7457 -1.7974 15 6 -0.0263 4.5373 -1.1073 16 6 -0.3580 5.8636 -0.7501 17 1 -1.3250 6.2675 -1.0114 18 6 0.5671 6.6544 -0.0576 19 7 1.7377 6.1653 0.2590 20 14 0.1290 8.4079 0.4140 21 1 -1.2447 8.7187 -0.0571 22 1 0.1912 8.5537 1.8906 23 1 1.0921 9.3456 -0.2171 24 7 1.1724 4.0417 -0.7822 25 1 -1.0501 0.0000 0.0003 26 1 3.0098 -1.0058 -0.2072 27 1 3.0093 0.3247 0.9752 28 1 5.1184 1.2229 -0.2306 29 1 4.9731 -0.1697 -1.3296 30 1 4.7418 1.3746 -3.2559 31 1 4.8870 2.7672 -2.1568 32 1 6.7783 2.0778 -4.4154 33 1 6.9242 3.4698 -3.3156 34 1 8.2586 2.3001 -3.4519 35 1 3.3866 2.9046 -0.2599 36 1 0.9166 0.9597 -2.0310 37 1 -1.3230 1.8170 -2.6661 38 1 -1.9285 4.1460 -2.0603 39 1 2.3784 6.7130 0.7391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328818610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:23 Heat of formation + Delta-G solvation = 46.299139 kcal Electronic energy + Delta-G solvation = -20887.806837 eV Core-core repulsion = 17797.226317 eV Total energy + Delta-G solvation = -3090.580520 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.81050 -37.82229 -36.47439 -33.48017 -32.86558 -31.69716 -30.12705 -29.08139 -27.83471 -26.37223 -25.27190 -23.46349 -21.73663 -21.13945 -19.87495 -17.70549 -17.32890 -16.56234 -16.21333 -15.77694 -15.21447 -15.06121 -14.68192 -14.34962 -13.73809 -13.59141 -13.43036 -13.14332 -12.77634 -12.33702 -12.13917 -11.91719 -11.58112 -11.38210 -11.18804 -11.14302 -10.94871 -10.86702 -10.55007 -10.42100 -9.90403 -9.74212 -9.60737 -9.56283 -9.40287 -8.72222 -7.81068 -7.44620 -6.41606 -6.27573 -4.39600 2.90553 3.13565 3.17933 3.24557 3.33687 3.43371 3.45779 3.81761 4.01791 4.19075 4.84938 4.90281 5.05960 5.14493 5.29683 5.33125 5.40805 5.56497 5.60684 5.63371 5.72803 5.88197 5.97648 6.05863 6.13348 6.21974 6.28994 6.55700 6.70449 6.92590 6.95558 7.01345 7.17268 7.30226 7.66536 7.87693 7.99104 8.21919 8.27759 8.42035 8.73305 8.86281 9.18477 10.30401 10.46119 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.005880 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.227163 B = 4760.422498 C = 6094.867967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.185 4.185 3 C -0.022 4.022 4 C 0.172 3.828 5 H 0.081 0.919 6 C -0.122 4.122 7 C 0.062 3.938 8 O -0.397 6.397 9 C 0.033 3.967 10 N -0.733 5.733 11 C 0.411 3.589 12 C -0.346 4.346 13 C -0.036 4.036 14 C -0.318 4.318 15 C 0.292 3.708 16 C -0.438 4.438 17 H 0.081 0.919 18 C 0.072 3.928 19 N -0.718 5.718 20 Si 0.902 3.098 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.275 1.275 24 N -0.529 5.529 25 H 0.207 0.793 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.395 0.605 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.831 -8.391 -2.544 11.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C -0.061 4.061 4 C 0.064 3.936 5 H 0.098 0.902 6 C -0.160 4.160 7 C -0.015 4.015 8 O -0.316 6.316 9 C -0.064 4.064 10 N -0.370 5.370 11 C 0.171 3.829 12 C -0.372 4.372 13 C -0.061 4.061 14 C -0.341 4.341 15 C 0.165 3.835 16 C -0.470 4.470 17 H 0.099 0.901 18 C -0.152 4.152 19 N -0.340 5.340 20 Si 0.727 3.273 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.200 1.200 24 N -0.250 5.250 25 H 0.224 0.776 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.230 0.770 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.682 -8.073 -1.962 11.315 hybrid contribution -0.969 0.686 -0.270 1.218 sum 6.713 -7.388 -2.232 10.228 Atomic orbital electron populations 1.24548 0.95663 1.00185 1.00138 1.22490 0.94067 1.00953 1.00999 1.19209 0.86112 0.99846 1.00898 1.20562 0.92185 0.83181 0.97634 0.90151 1.21747 0.94408 1.00831 0.98973 1.22540 0.80189 1.00537 0.98214 1.87807 1.21035 1.69844 1.52903 1.22701 0.98725 0.95089 0.89866 1.44212 1.15373 1.11866 1.65509 1.18467 0.84726 0.90353 0.89305 1.20739 0.97756 1.00377 1.18312 1.20527 0.94781 0.94670 0.96113 1.21497 1.01517 0.96288 1.14810 1.18162 0.85859 0.92473 0.87030 1.19579 1.00847 0.95663 1.30957 0.90069 1.26022 0.94578 0.99826 0.94791 1.70166 1.04191 1.35155 1.24499 0.86366 0.79790 0.82419 0.78747 1.18513 1.20012 1.20032 1.68192 1.19586 1.09739 1.27507 0.77628 0.89863 0.89828 0.90466 0.90035 0.93396 0.92156 0.94249 0.93921 0.89935 0.76997 0.88789 0.89346 0.89036 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 16.77 29.55 0.50 -2.78 16 2 C -0.19 -3.19 10.36 -37.12 -0.38 -3.57 16 3 C -0.02 -0.31 5.39 -29.52 -0.16 -0.47 16 4 C 0.17 2.55 2.21 -67.93 -0.15 2.40 16 5 H 0.08 1.27 6.43 -51.93 -0.33 0.93 16 6 C -0.12 -1.49 5.12 -26.73 -0.14 -1.63 16 7 C 0.06 0.83 5.83 37.16 0.22 1.05 16 8 O -0.40 -5.38 10.70 -35.23 -0.38 -5.75 16 9 C 0.03 0.35 11.01 101.05 1.11 1.47 16 10 N -0.73 -14.13 4.64 -53.90 -0.25 -14.38 16 11 C 0.41 9.79 7.14 -155.33 -1.11 8.68 16 12 C -0.35 -7.77 5.99 -38.87 -0.23 -8.00 16 13 C -0.04 -0.84 10.14 -39.39 -0.40 -1.24 16 14 C -0.32 -8.09 9.83 -38.65 -0.38 -8.47 16 15 C 0.29 8.17 6.55 -85.00 -0.56 7.61 16 16 C -0.44 -12.04 9.14 -37.74 -0.34 -12.39 16 17 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 18 C 0.07 1.88 5.50 -17.34 -0.10 1.78 16 19 N -0.72 -19.25 11.46 55.55 0.64 -18.62 16 20 Si 0.90 19.04 29.56 -169.99 -5.02 14.01 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 N -0.53 -14.54 7.89 -10.33 -0.08 -14.62 16 25 H 0.21 3.14 7.80 -54.09 -0.42 2.72 16 26 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.93 7.75 -51.93 -0.40 0.53 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.39 7.74 8.72 -40.82 -0.36 7.38 16 36 H 0.09 1.94 4.64 -52.49 -0.24 1.69 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -30.90 329.28 -7.79 -38.69 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.53 Total: 11.27 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.12 Total: -15.56 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.30 Total: -47.62 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.38 Total: -5.75 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.90 -7.79 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328818610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.988 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds