Wall clock time and date at job start Mon Mar 30 2020 01:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47346 * 131.62504 * 3 2 1 5 5 H 1.08996 * 109.47050 * 305.00310 * 4 3 2 6 6 C 1.52997 * 109.47338 * 184.99828 * 4 3 2 7 7 C 1.53000 * 109.47062 * 175.00342 * 6 4 3 8 8 O 1.42901 * 109.47169 * 180.02562 * 7 6 4 9 9 C 1.42901 * 114.00037 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.46402 * 64.99980 * 4 3 2 11 11 C 1.38816 * 119.99912 * 274.99780 * 10 4 3 12 12 C 1.39795 * 119.58938 * 0.02791 * 11 10 4 13 13 C 1.38592 * 119.49615 * 179.97438 * 12 11 10 14 14 C 1.38397 * 118.67826 * 359.97438 * 13 12 11 15 15 C 1.40559 * 119.14805 * 0.02562 * 14 13 12 16 16 C 1.41308 * 119.78129 * 180.28124 * 15 14 13 17 17 H 1.08008 * 120.00513 * 359.71838 * 16 15 14 18 18 C 1.40029 * 120.00282 * 179.72612 * 16 15 14 19 19 N 1.30752 * 119.99464 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00451 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47079 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47016 * 119.99677 * 20 18 16 23 23 H 1.48499 * 109.47220 * 239.99927 * 20 18 16 24 24 N 1.31956 * 119.58168 * 180.02562 * 11 10 4 25 25 H 4.44649 * 5.63361 * 180.02562 * 4 1 2 26 26 H 1.09011 * 109.47342 * 11.62959 * 3 2 1 27 27 H 1.09000 * 109.47685 * 251.62708 * 3 2 1 28 28 H 1.08999 * 109.47326 * 295.00744 * 6 4 3 29 29 H 1.09001 * 109.46844 * 55.00178 * 6 4 3 30 30 H 1.09007 * 109.47106 * 300.00137 * 7 6 4 31 31 H 1.08992 * 109.46922 * 59.99917 * 7 6 4 32 32 H 1.09000 * 109.47036 * 299.99444 * 9 8 7 33 33 H 1.09001 * 109.47280 * 60.00068 * 9 8 7 34 34 H 1.09001 * 109.47015 * 179.97438 * 9 8 7 35 35 H 0.97001 * 119.99871 * 95.00376 * 10 4 3 36 36 H 1.08001 * 120.25000 * 359.95393 * 12 11 10 37 37 H 1.07991 * 120.66389 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.42131 * 180.02562 * 14 13 12 39 39 H 0.97000 * 119.99838 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.9591 -1.0783 5 1 2.7211 0.6877 -2.0404 6 6 4.6805 0.8670 -1.1631 7 6 5.1797 1.7306 -2.3233 8 8 6.6039 1.6441 -2.4029 9 6 7.1751 2.4188 -3.4592 10 7 2.7674 2.3297 -0.7362 11 6 1.5134 2.8056 -1.0939 12 6 0.6276 1.9695 -1.7799 13 6 -0.6241 2.4465 -2.1356 14 6 -0.9605 3.7457 -1.7974 15 6 -0.0263 4.5373 -1.1073 16 6 -0.3580 5.8636 -0.7501 17 1 -1.3250 6.2675 -1.0114 18 6 0.5671 6.6544 -0.0576 19 7 1.7377 6.1653 0.2590 20 14 0.1290 8.4079 0.4140 21 1 -1.2447 8.7187 -0.0571 22 1 0.1912 8.5537 1.8906 23 1 1.0921 9.3456 -0.2171 24 7 1.1724 4.0417 -0.7822 25 1 -1.0501 0.0000 0.0003 26 1 3.0098 -1.0058 -0.2072 27 1 3.0093 0.3247 0.9752 28 1 5.1184 1.2229 -0.2306 29 1 4.9731 -0.1697 -1.3296 30 1 4.7418 1.3746 -3.2559 31 1 4.8870 2.7672 -2.1568 32 1 6.7783 2.0778 -4.4154 33 1 6.9242 3.4698 -3.3156 34 1 8.2586 2.3001 -3.4519 35 1 3.3866 2.9046 -0.2599 36 1 0.9166 0.9597 -2.0310 37 1 -1.3230 1.8170 -2.6661 38 1 -1.9285 4.1460 -2.0603 39 1 2.3784 6.7130 0.7391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328818610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:23 Heat of formation + Delta-G solvation = 27.823644 kcal Electronic energy + Delta-G solvation = -20888.607995 eV Core-core repulsion = 17797.226317 eV Total energy + Delta-G solvation = -3091.381677 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.41154 -39.06487 -37.86882 -35.35234 -34.24930 -33.16423 -32.01269 -30.43935 -29.41158 -27.32936 -27.15646 -24.63592 -23.46390 -22.76826 -21.40037 -19.28056 -18.87776 -18.09960 -17.37682 -17.01663 -16.64609 -16.48688 -16.05812 -15.96554 -15.39247 -14.96340 -14.85441 -14.47835 -14.16037 -13.83040 -13.65516 -13.54769 -12.90092 -12.73431 -12.63231 -12.55395 -12.41172 -12.34308 -12.05049 -11.88892 -11.68950 -11.32683 -11.18451 -10.82445 -10.63341 -10.40240 -9.71725 -9.38048 -8.19233 -8.17166 -6.40840 1.10945 1.40459 1.40586 1.55037 1.58517 2.07877 2.13623 2.25497 2.69407 2.79656 2.96876 3.67579 3.97008 4.06542 4.15670 4.23864 4.35079 4.45254 4.46600 4.50974 4.57333 4.66270 4.77174 4.82483 4.87848 4.92490 5.03998 5.04375 5.06509 5.17923 5.24581 5.34524 5.43518 5.79025 6.04031 6.14209 6.18691 6.26764 6.62209 6.88772 6.95764 7.00225 7.28942 8.40450 8.55591 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.013775 B = 0.005880 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.227163 B = 4760.422498 C = 6094.867967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.198 4.198 3 C -0.022 4.022 4 C 0.173 3.827 5 H 0.076 0.924 6 C -0.110 4.110 7 C 0.064 3.936 8 O -0.408 6.408 9 C 0.026 3.974 10 N -0.727 5.727 11 C 0.399 3.601 12 C -0.333 4.333 13 C -0.034 4.034 14 C -0.346 4.346 15 C 0.260 3.740 16 C -0.478 4.478 17 H 0.081 0.919 18 C 0.028 3.972 19 N -0.753 5.753 20 Si 0.982 3.018 21 H -0.257 1.257 22 H -0.268 1.268 23 H -0.267 1.267 24 N -0.563 5.563 25 H 0.217 0.783 26 H 0.125 0.875 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.104 0.896 35 H 0.391 0.609 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.850 -9.580 -2.684 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.198 4.198 3 C -0.060 4.060 4 C 0.067 3.933 5 H 0.094 0.906 6 C -0.147 4.147 7 C -0.013 4.013 8 O -0.328 6.328 9 C -0.070 4.070 10 N -0.363 5.363 11 C 0.158 3.842 12 C -0.359 4.359 13 C -0.059 4.059 14 C -0.370 4.370 15 C 0.132 3.868 16 C -0.510 4.510 17 H 0.099 0.901 18 C -0.193 4.193 19 N -0.376 5.376 20 Si 0.803 3.197 21 H -0.181 1.181 22 H -0.193 1.193 23 H -0.192 1.192 24 N -0.285 5.285 25 H 0.234 0.766 26 H 0.142 0.858 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.131 0.869 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.123 0.877 35 H 0.226 0.774 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.725 -9.313 -2.113 12.935 hybrid contribution -1.208 0.896 -0.285 1.531 sum 7.517 -8.417 -2.398 11.537 Atomic orbital electron populations 1.25103 0.96618 1.00841 1.00585 1.23297 0.95320 1.00500 1.00649 1.19372 0.84281 1.01717 1.00638 1.20783 0.94023 0.80858 0.97642 0.90614 1.21668 0.92067 1.02395 0.98600 1.22473 0.80607 0.99259 0.98963 1.87780 1.20730 1.70263 1.53977 1.22901 1.00020 0.94475 0.89638 1.44415 1.13648 1.13576 1.64621 1.18880 0.86428 0.89779 0.89083 1.20967 0.97194 1.00936 1.16755 1.20881 0.95538 0.94069 0.95367 1.21613 1.01646 0.97524 1.16168 1.18594 0.86836 0.93401 0.87930 1.19892 1.01623 0.96591 1.32878 0.90118 1.26881 0.94142 1.04154 0.94154 1.70258 1.05166 1.37018 1.25115 0.85174 0.79589 0.76471 0.78502 1.18095 1.19255 1.19186 1.68163 1.19889 1.11614 1.28883 0.76606 0.85758 0.89432 0.90145 0.86912 0.93001 0.94868 0.93265 0.94590 0.87746 0.77448 0.86525 0.86102 0.88704 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.21 16.77 74.32 1.25 -5.96 16 2 C -0.20 -6.43 10.36 31.12 0.32 -6.11 16 3 C -0.02 -0.56 5.39 28.79 0.16 -0.40 16 4 C 0.17 4.75 2.21 44.99 0.10 4.85 16 5 H 0.08 2.19 6.43 -2.39 -0.02 2.17 16 6 C -0.11 -2.39 5.12 30.59 0.16 -2.24 16 7 C 0.06 1.63 5.83 71.98 0.42 2.05 16 8 O -0.41 -10.33 10.70 -148.98 -1.59 -11.92 16 9 C 0.03 0.52 11.01 113.37 1.25 1.76 16 10 N -0.73 -27.73 4.64 -324.45 -1.51 -29.23 16 11 C 0.40 19.09 7.14 133.42 0.95 20.05 16 12 C -0.33 -14.66 5.99 22.73 0.14 -14.52 16 13 C -0.03 -1.55 10.14 22.39 0.23 -1.32 16 14 C -0.35 -18.01 9.83 22.87 0.22 -17.78 16 15 C 0.26 15.04 6.55 40.18 0.26 15.30 16 16 C -0.48 -27.21 9.14 23.46 0.21 -27.00 16 17 H 0.08 4.38 7.85 -2.91 -0.02 4.36 16 18 C 0.03 1.48 5.50 85.29 0.47 1.95 16 19 N -0.75 -41.46 11.46 21.84 0.25 -41.21 16 20 Si 0.98 39.75 29.56 68.60 2.03 41.78 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 22 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 24 N -0.56 -31.82 7.89 -186.60 -1.47 -33.29 16 25 H 0.22 6.42 7.80 -4.41 -0.03 6.38 16 26 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.03 1.02 7.75 -2.39 -0.02 1.00 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.39 15.45 8.72 -92.71 -0.81 14.64 16 36 H 0.12 4.56 4.64 -2.91 -0.01 4.55 16 37 H 0.12 4.59 8.06 -2.92 -0.02 4.57 16 38 H 0.09 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.27 13.63 8.29 -92.71 -0.77 12.87 16 Total: -1.00 -68.64 329.28 4.08 -64.56 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: 0.24 Total: 38.69 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 6.13 Total: -29.38 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -2.73 Total: -103.74 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.59 Total: -11.92 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -68.64 4.08 -64.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328818610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.383 kcal (2) G-P(sol) polarization free energy of solvation -68.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds