Wall clock time and date at job start Mon Mar 30 2020 01:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81402 * 103.00309 * 2 1 4 4 C 1.53001 * 109.47615 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46944 * 59.99977 * 4 3 2 6 6 O 1.42908 * 109.47028 * 300.00483 * 4 3 2 7 7 C 1.52996 * 109.47528 * 180.02562 * 4 3 2 8 8 N 1.46900 * 109.47233 * 186.09566 * 7 4 3 9 9 C 1.46951 * 110.99878 * 283.99460 * 8 7 4 10 10 C 1.53049 * 109.36281 * 183.18824 * 9 8 7 11 11 N 1.46961 * 109.36471 * 301.59662 * 10 9 8 12 12 C 1.46900 * 111.00001 * 183.18865 * 11 10 9 13 13 C 1.50693 * 109.47203 * 170.00270 * 12 11 10 14 14 H 1.08007 * 120.00033 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00244 * 179.72055 * 13 12 11 16 16 N 1.31512 * 120.00179 * 180.27497 * 15 13 12 17 17 Si 1.86800 * 119.99954 * 0.28053 * 15 13 12 18 18 H 1.48496 * 109.47337 * 89.99344 * 17 15 13 19 19 H 1.48499 * 109.47053 * 209.99456 * 17 15 13 20 20 H 1.48500 * 109.46846 * 329.99439 * 17 15 13 21 21 C 1.46960 * 110.87858 * 59.32511 * 11 10 9 22 22 C 1.46952 * 110.99834 * 47.79221 * 8 7 4 23 23 H 1.09003 * 109.46705 * 300.00025 * 1 2 3 24 24 H 1.09007 * 109.47233 * 59.99543 * 1 2 3 25 25 H 1.08990 * 109.47440 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46984 * 60.00036 * 3 2 1 27 27 H 1.08997 * 109.47361 * 300.00330 * 3 2 1 28 28 H 0.96703 * 113.99115 * 299.99466 * 6 4 3 29 29 H 1.08996 * 109.46799 * 66.09536 * 7 4 3 30 30 H 1.09003 * 109.46822 * 306.09935 * 7 4 3 31 31 H 1.09001 * 109.49284 * 63.22281 * 9 8 7 32 32 H 1.09001 * 109.50847 * 303.16579 * 9 8 7 33 33 H 1.09006 * 109.48927 * 181.63522 * 10 9 8 34 34 H 1.08997 * 109.49467 * 61.56651 * 10 9 8 35 35 H 1.09005 * 109.47205 * 49.99840 * 12 11 10 36 36 H 1.09009 * 109.46941 * 290.00202 * 12 11 10 37 37 H 0.96997 * 120.00445 * 180.02562 * 16 15 13 38 38 H 1.08993 * 109.49148 * 60.64235 * 21 11 10 39 39 H 1.08998 * 109.48915 * 180.71082 * 21 11 10 40 40 H 1.08999 * 109.49340 * 296.78229 * 22 8 7 41 41 H 1.09007 * 109.48998 * 56.84882 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.1609 1.4705 -0.8909 6 8 4.2921 1.3241 1.1658 7 6 4.0866 3.4307 0.0000 8 7 5.5385 3.5981 -0.1477 9 6 6.2341 3.2961 1.1110 10 6 7.7321 3.5584 0.9385 11 7 8.2492 2.7277 -0.1580 12 6 9.7011 2.8951 -0.3057 13 6 10.2315 1.8586 -1.2623 14 1 9.5574 1.1469 -1.7157 15 6 11.5765 1.8227 -1.5638 16 7 12.0385 0.9215 -2.4028 17 14 12.7424 3.0540 -0.7803 18 1 13.2666 2.4984 0.4931 19 1 13.8726 3.3234 -1.7052 20 1 12.0149 4.3192 -0.5060 21 6 7.5535 3.0298 -1.4168 22 6 6.0555 2.7675 -1.2442 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 1.8032 2.2371 0.8900 27 1 1.8032 2.2372 -0.8899 28 1 3.9634 1.6929 1.9972 29 1 3.7630 3.8779 0.9399 30 1 3.5779 3.9214 -0.8299 31 1 6.0759 2.2497 1.3720 32 1 5.8426 3.9321 1.9050 33 1 8.2540 3.3073 1.8620 34 1 7.8925 4.6107 0.7044 35 1 10.1815 2.7733 0.6651 36 1 9.9144 3.8911 -0.6942 37 1 12.9848 0.8960 -2.6146 38 1 7.7117 4.0762 -1.6777 39 1 7.9451 2.3936 -2.2105 40 1 5.8952 1.7151 -1.0101 41 1 5.5337 3.0185 -2.1678 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331109194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:48 Heat of formation + Delta-G solvation = -30.979798 kcal Electronic energy + Delta-G solvation = -19851.257354 eV Core-core repulsion = 16892.769719 eV Total energy + Delta-G solvation = -2958.487635 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.55655 -37.27557 -34.68480 -32.46884 -31.51620 -30.39564 -29.29473 -28.69063 -26.26460 -23.87483 -23.30303 -21.84578 -20.90416 -19.07858 -17.24295 -16.75305 -16.28262 -15.84012 -15.39416 -15.18763 -14.64411 -14.43645 -14.28431 -14.05452 -13.92989 -13.50970 -13.49729 -12.89845 -12.77355 -12.30408 -12.14595 -11.93039 -11.64231 -11.46014 -11.35177 -10.99033 -10.88053 -10.52931 -10.36036 -10.33602 -10.12865 -9.99980 -9.76819 -9.21341 -8.52391 -7.96850 -7.88537 -7.27426 -6.00790 -3.97765 1.36901 2.33231 3.31977 3.39029 3.41754 4.00733 4.19927 4.37902 4.46162 4.67249 4.78612 4.80882 4.83799 4.92484 4.99339 5.15724 5.31392 5.34601 5.36083 5.54904 5.60029 5.67475 5.82431 5.90475 6.00512 6.05741 6.22188 6.44566 6.59948 6.68720 6.89132 7.02845 7.17845 7.27145 7.48198 7.65415 7.98195 8.12397 8.71530 9.07883 9.61202 11.12367 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.033392 B = 0.003661 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.326778 B = 7647.001761 C = 8065.730427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.234 6.234 3 C -0.121 4.121 4 C 0.084 3.916 5 H 0.115 0.885 6 O -0.537 6.537 7 C 0.031 3.969 8 N -0.530 5.530 9 C 0.045 3.955 10 C 0.054 3.946 11 N -0.527 5.527 12 C 0.162 3.838 13 C -0.508 4.508 14 H 0.080 0.920 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.268 1.268 21 C 0.068 3.932 22 C 0.050 3.950 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.370 0.630 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.023 0.977 36 H -0.012 1.012 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.091 0.909 40 H 0.052 0.948 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.999 4.798 6.469 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S -0.008 6.008 3 C -0.271 4.271 4 C 0.022 3.978 5 H 0.133 0.867 6 O -0.342 6.342 7 C -0.100 4.100 8 N -0.253 5.253 9 C -0.082 4.082 10 C -0.075 4.075 11 N -0.251 5.251 12 C 0.036 3.964 13 C -0.546 4.546 14 H 0.098 0.902 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.193 1.193 21 C -0.060 4.060 22 C -0.078 4.078 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.119 0.881 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.216 0.784 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.006 0.994 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.109 0.891 40 H 0.070 0.930 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.826 3.513 5.931 22.888 hybrid contribution -0.545 2.063 0.715 2.250 sum -22.371 5.576 6.646 23.994 Atomic orbital electron populations 1.23423 0.95600 1.06451 1.04563 1.87421 1.05417 1.10034 1.97942 1.24274 1.01720 0.95807 1.05277 1.22597 0.88861 0.95334 0.91038 0.86716 1.86759 1.68901 1.63352 1.15162 1.22872 0.90697 0.93560 1.02895 1.62497 1.01720 1.54733 1.06354 1.22431 0.93818 1.01574 0.90400 1.22112 0.93996 0.95227 0.96139 1.62083 1.06165 1.53064 1.03808 1.20152 0.83439 0.95771 0.97017 1.21043 0.93612 1.15065 1.24862 0.90158 1.24901 0.98044 0.95481 0.94946 1.69895 1.14339 1.34820 1.34980 0.86861 0.80951 0.82429 0.79517 1.20174 1.21262 1.19291 1.22005 0.91121 0.99173 0.93735 1.22344 0.96275 0.95997 0.93163 0.90758 0.90748 0.88128 0.90053 0.89295 0.78356 0.90684 0.89978 0.90853 0.91904 0.91160 0.95608 0.95875 0.99446 0.92716 0.95513 0.89051 0.92975 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.89 10.76 101.05 1.09 0.20 16 2 S -0.23 -2.42 22.02 -107.50 -2.37 -4.79 16 3 C -0.12 -0.99 5.64 37.16 0.21 -0.78 16 4 C 0.08 0.86 2.47 -26.73 -0.07 0.79 16 5 H 0.12 1.45 6.00 -51.93 -0.31 1.14 16 6 O -0.54 -6.33 10.12 -35.23 -0.36 -6.68 16 7 C 0.03 0.30 5.29 -3.83 -0.02 0.28 16 8 N -0.53 -7.37 4.92 -234.47 -1.15 -8.52 16 9 C 0.05 0.66 5.18 -3.77 -0.02 0.64 16 10 C 0.05 0.97 5.61 -3.77 -0.02 0.95 16 11 N -0.53 -11.47 4.70 -235.90 -1.11 -12.58 16 12 C 0.16 4.07 3.79 -4.98 -0.02 4.05 16 13 C -0.51 -14.72 9.03 -34.44 -0.31 -15.03 16 14 H 0.08 2.53 7.37 -52.48 -0.39 2.14 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 17 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 21 C 0.07 1.36 5.43 -3.76 -0.02 1.34 16 22 C 0.05 0.79 4.73 -3.77 -0.02 0.77 16 23 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 24 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.37 3.03 9.04 45.56 0.41 3.45 16 29 H 0.07 0.63 7.91 -51.93 -0.41 0.22 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.14 5.64 -51.93 -0.29 0.85 16 32 H 0.06 0.76 8.02 -51.93 -0.42 0.35 16 33 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.58 7.46 -51.93 -0.39 0.19 16 36 H -0.01 -0.31 7.17 -51.92 -0.37 -0.68 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 2.01 6.79 -51.93 -0.35 1.66 16 40 H 0.05 0.90 6.28 -51.93 -0.33 0.57 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 328.68 15.07 4.95 4.95 Total: -1.00 -32.71 328.68 -9.46 -42.17 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.24 Total: 0.32 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 0.70 Total: -4.88 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -1.49 Total: -48.33 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.36 Total: -6.68 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.37 Total: -4.79 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.71 -9.46 -42.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331109194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.193 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds