Wall clock time and date at job start Mon Mar 30 2020 01:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81402 * 103.00309 * 2 1 4 4 C 1.53001 * 109.47615 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46944 * 59.99977 * 4 3 2 6 6 O 1.42908 * 109.47028 * 300.00483 * 4 3 2 7 7 C 1.52996 * 109.47528 * 180.02562 * 4 3 2 8 8 N 1.46900 * 109.47233 * 186.09566 * 7 4 3 9 9 C 1.46951 * 110.99878 * 283.99460 * 8 7 4 10 10 C 1.53049 * 109.36281 * 183.18824 * 9 8 7 11 11 N 1.46961 * 109.36471 * 301.59662 * 10 9 8 12 12 C 1.46900 * 111.00001 * 183.18865 * 11 10 9 13 13 C 1.50693 * 109.47203 * 170.00270 * 12 11 10 14 14 H 1.08007 * 120.00033 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00244 * 179.72055 * 13 12 11 16 16 N 1.31512 * 120.00179 * 180.27497 * 15 13 12 17 17 Si 1.86800 * 119.99954 * 0.28053 * 15 13 12 18 18 H 1.48496 * 109.47337 * 89.99344 * 17 15 13 19 19 H 1.48499 * 109.47053 * 209.99456 * 17 15 13 20 20 H 1.48500 * 109.46846 * 329.99439 * 17 15 13 21 21 C 1.46960 * 110.87858 * 59.32511 * 11 10 9 22 22 C 1.46952 * 110.99834 * 47.79221 * 8 7 4 23 23 H 1.09003 * 109.46705 * 300.00025 * 1 2 3 24 24 H 1.09007 * 109.47233 * 59.99543 * 1 2 3 25 25 H 1.08990 * 109.47440 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46984 * 60.00036 * 3 2 1 27 27 H 1.08997 * 109.47361 * 300.00330 * 3 2 1 28 28 H 0.96703 * 113.99115 * 299.99466 * 6 4 3 29 29 H 1.08996 * 109.46799 * 66.09536 * 7 4 3 30 30 H 1.09003 * 109.46822 * 306.09935 * 7 4 3 31 31 H 1.09001 * 109.49284 * 63.22281 * 9 8 7 32 32 H 1.09001 * 109.50847 * 303.16579 * 9 8 7 33 33 H 1.09006 * 109.48927 * 181.63522 * 10 9 8 34 34 H 1.08997 * 109.49467 * 61.56651 * 10 9 8 35 35 H 1.09005 * 109.47205 * 49.99840 * 12 11 10 36 36 H 1.09009 * 109.46941 * 290.00202 * 12 11 10 37 37 H 0.96997 * 120.00445 * 180.02562 * 16 15 13 38 38 H 1.08993 * 109.49148 * 60.64235 * 21 11 10 39 39 H 1.08998 * 109.48915 * 180.71082 * 21 11 10 40 40 H 1.08999 * 109.49340 * 296.78229 * 22 8 7 41 41 H 1.09007 * 109.48998 * 56.84882 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.1609 1.4705 -0.8909 6 8 4.2921 1.3241 1.1658 7 6 4.0866 3.4307 0.0000 8 7 5.5385 3.5981 -0.1477 9 6 6.2341 3.2961 1.1110 10 6 7.7321 3.5584 0.9385 11 7 8.2492 2.7277 -0.1580 12 6 9.7011 2.8951 -0.3057 13 6 10.2315 1.8586 -1.2623 14 1 9.5574 1.1469 -1.7157 15 6 11.5765 1.8227 -1.5638 16 7 12.0385 0.9215 -2.4028 17 14 12.7424 3.0540 -0.7803 18 1 13.2666 2.4984 0.4931 19 1 13.8726 3.3234 -1.7052 20 1 12.0149 4.3192 -0.5060 21 6 7.5535 3.0298 -1.4168 22 6 6.0555 2.7675 -1.2442 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 1.8032 2.2371 0.8900 27 1 1.8032 2.2372 -0.8899 28 1 3.9634 1.6929 1.9972 29 1 3.7630 3.8779 0.9399 30 1 3.5779 3.9214 -0.8299 31 1 6.0759 2.2497 1.3720 32 1 5.8426 3.9321 1.9050 33 1 8.2540 3.3073 1.8620 34 1 7.8925 4.6107 0.7044 35 1 10.1815 2.7733 0.6651 36 1 9.9144 3.8911 -0.6942 37 1 12.9848 0.8960 -2.6146 38 1 7.7117 4.0762 -1.6777 39 1 7.9451 2.3936 -2.2105 40 1 5.8952 1.7151 -1.0101 41 1 5.5337 3.0185 -2.1678 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331109194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:45 Heat of formation + Delta-G solvation = -57.929615 kcal Electronic energy + Delta-G solvation = -19852.425985 eV Core-core repulsion = 16892.769719 eV Total energy + Delta-G solvation = -2959.656266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.146 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.68705 -38.50657 -36.05902 -34.51569 -32.52490 -31.73786 -30.45356 -29.71673 -27.69632 -25.13344 -24.68645 -23.11691 -22.48207 -20.44565 -18.96295 -18.11956 -17.16884 -16.92999 -16.55257 -16.18051 -16.09887 -15.80892 -15.77830 -15.17936 -15.10367 -14.63460 -14.52047 -14.37032 -13.93617 -13.52609 -13.45959 -13.13196 -12.86733 -12.73997 -12.61843 -12.44873 -12.30773 -11.97568 -11.86497 -11.82665 -11.51194 -11.32828 -11.29458 -10.83075 -10.78689 -9.12618 -8.93094 -8.66546 -8.29068 -6.32769 0.72862 1.33826 1.35522 1.46583 1.72306 2.33864 2.98018 3.03554 3.24265 3.46987 3.61928 3.96686 4.05435 4.13739 4.18829 4.26689 4.33362 4.35148 4.40720 4.47908 4.57869 4.60596 4.66413 4.80354 4.86026 4.87910 4.91337 4.98398 5.02921 5.10342 5.14971 5.31559 5.52491 5.94220 6.05429 6.17769 6.39368 6.67211 6.73099 6.84089 7.30891 8.87708 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.033392 B = 0.003661 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.326778 B = 7647.001761 C = 8065.730427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.318 6.318 3 C -0.099 4.099 4 C 0.089 3.911 5 H 0.084 0.916 6 O -0.561 6.561 7 C 0.036 3.964 8 N -0.534 5.534 9 C 0.054 3.946 10 C 0.050 3.950 11 N -0.545 5.545 12 C 0.173 3.827 13 C -0.517 4.517 14 H 0.035 0.965 15 C 0.007 3.993 16 N -0.948 5.948 17 Si 0.951 3.049 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.253 1.253 21 C 0.070 3.930 22 C 0.066 3.934 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.384 0.616 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.026 0.974 35 H 0.028 0.972 36 H -0.015 1.015 37 H 0.267 0.733 38 H 0.024 0.976 39 H 0.054 0.946 40 H 0.034 0.966 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.901 7.286 8.307 27.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.093 6.093 3 C -0.248 4.248 4 C 0.027 3.973 5 H 0.102 0.898 6 O -0.368 6.368 7 C -0.094 4.094 8 N -0.257 5.257 9 C -0.074 4.074 10 C -0.078 4.078 11 N -0.270 5.270 12 C 0.046 3.954 13 C -0.555 4.555 14 H 0.053 0.947 15 C -0.190 4.190 16 N -0.589 5.589 17 Si 0.774 3.226 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.177 1.177 21 C -0.058 4.058 22 C -0.063 4.063 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.234 0.766 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.002 0.998 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.771 6.011 7.787 25.726 hybrid contribution -0.055 1.214 0.112 1.221 sum -23.826 7.225 7.899 26.121 Atomic orbital electron populations 1.23415 0.91652 1.07170 1.05825 1.87733 1.09941 1.13434 1.98178 1.24139 0.99975 0.93526 1.07117 1.22420 0.90134 0.95069 0.89648 0.89802 1.86731 1.69613 1.64178 1.16293 1.22971 0.87840 0.93404 1.05183 1.62468 1.04108 1.53800 1.05314 1.22379 0.91563 1.01812 0.91602 1.22268 0.96512 0.94419 0.94593 1.62000 1.04506 1.54911 1.05602 1.19902 0.85860 0.93887 0.95745 1.21246 0.93461 1.15241 1.25592 0.94704 1.25874 1.00022 0.97688 0.95432 1.70052 1.15083 1.37033 1.36701 0.85668 0.78269 0.79917 0.78783 1.18846 1.20529 1.17720 1.21928 0.93806 0.97893 0.92203 1.22100 0.93468 0.95455 0.95233 0.89284 0.89583 0.87754 0.87640 0.87820 0.76644 0.87834 0.88205 0.91908 0.88309 0.90641 0.95582 0.95424 0.99782 0.92373 0.95823 0.92791 0.94787 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.76 113.37 1.22 -0.05 16 2 S -0.32 -6.32 22.02 -56.49 -1.24 -7.56 16 3 C -0.10 -1.35 5.64 71.98 0.41 -0.94 16 4 C 0.09 1.66 2.47 30.59 0.08 1.74 16 5 H 0.08 2.11 6.00 -2.39 -0.01 2.10 16 6 O -0.56 -12.45 10.12 -148.98 -1.51 -13.96 16 7 C 0.04 0.58 5.29 86.30 0.46 1.04 16 8 N -0.53 -13.54 4.92 -895.73 -4.40 -17.95 16 9 C 0.05 1.44 5.18 86.31 0.45 1.88 16 10 C 0.05 1.73 5.61 86.31 0.48 2.22 16 11 N -0.55 -24.11 4.70 -900.25 -4.23 -28.34 16 12 C 0.17 8.78 3.79 85.55 0.32 9.11 16 13 C -0.52 -31.27 9.03 25.60 0.23 -31.04 16 14 H 0.03 2.35 7.37 -2.91 -0.02 2.33 16 15 C 0.01 0.42 5.47 84.66 0.46 0.89 16 16 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 17 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 18 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 21 C 0.07 2.89 5.43 86.31 0.47 3.36 16 22 C 0.07 2.07 4.73 86.31 0.41 2.48 16 23 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.10 1.09 8.14 -2.40 -0.02 1.08 16 26 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.38 5.39 9.04 -74.06 -0.67 4.72 16 29 H 0.10 1.17 7.91 -2.39 -0.02 1.15 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.85 5.64 -2.39 -0.01 1.84 16 32 H 0.10 1.96 8.02 -2.39 -0.02 1.94 16 33 H 0.08 2.49 8.07 -2.38 -0.02 2.47 16 34 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.03 1.37 7.46 -2.38 -0.02 1.35 16 36 H -0.02 -0.79 7.17 -2.38 -0.02 -0.80 16 37 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 38 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.05 2.57 6.79 -2.39 -0.02 2.55 16 40 H 0.03 1.20 6.28 -2.39 -0.01 1.19 16 41 H 0.09 2.42 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -74.64 328.68 -3.94 -78.59 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.28 Total: 11.82 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 4.98 Total: -9.31 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -8.34 Total: -106.86 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -1.51 Total: -13.96 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Atomic # 16 Polarization: -6.32 SS G_CDS: -1.24 Total: -7.56 kcal Total: -74.64 -3.94 -78.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331109194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.659 kcal (2) G-P(sol) polarization free energy of solvation -74.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds