Wall clock time and date at job start Mon Mar 30 2020 01:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38617 * 120.44623 * 2 1 4 4 C 1.38573 * 118.39906 * 179.97438 * 3 2 1 5 5 N 1.32354 * 119.10731 * 0.02562 * 4 3 2 6 6 C 1.31781 * 120.81332 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.11786 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46995 * 165.00500 * 7 6 5 9 9 C 1.52999 * 109.47030 * 285.00257 * 7 6 5 10 10 N 1.46898 * 109.46935 * 45.00643 * 7 6 5 11 11 C 1.46898 * 110.99934 * 155.00067 * 10 7 6 12 12 C 1.52997 * 109.47390 * 179.97438 * 11 10 7 13 13 H 1.09004 * 109.46881 * 54.99442 * 12 11 10 14 14 C 1.47201 * 109.47013 * 295.00280 * 12 11 10 15 15 N 8.05634 * 157.44064 * 155.46602 * 2 1 3 16 16 C 1.52997 * 109.47504 * 174.99803 * 12 11 10 17 17 C 1.50701 * 109.47212 * 184.99949 * 16 12 11 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 12 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 12 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 N 1.31807 * 121.75831 * 0.28504 * 6 5 4 26 26 H 1.09003 * 109.47272 * 90.00138 * 1 2 3 27 27 H 1.08998 * 109.47437 * 209.99918 * 1 2 3 28 28 H 1.08996 * 109.47562 * 330.00045 * 1 2 3 29 29 H 1.08004 * 120.80017 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.44832 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.47033 * 60.00266 * 9 7 6 32 32 H 1.09007 * 109.46935 * 180.02562 * 9 7 6 33 33 H 1.08998 * 109.47543 * 300.00010 * 9 7 6 34 34 H 1.00893 * 111.00632 * 31.03927 * 10 7 6 35 35 H 1.09003 * 109.47230 * 59.99766 * 11 10 7 36 36 H 1.08998 * 109.46947 * 299.99824 * 11 10 7 37 37 H 1.09002 * 109.47153 * 64.99951 * 16 12 11 38 38 H 1.09001 * 109.46832 * 305.00142 * 16 12 11 39 39 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5943 1.1455 0.0005 5 7 4.1964 -0.0331 0.0005 6 6 3.4956 -1.1492 0.0005 7 6 4.2206 -2.4704 0.0011 8 1 3.5250 -3.2664 0.2669 9 6 4.7938 -2.7381 -1.3920 10 7 5.3143 -2.4283 0.9809 11 6 5.6538 -3.7786 1.4491 12 6 6.7944 -3.6943 2.4654 13 1 6.5153 -3.0129 3.2691 14 6 8.0090 -3.1962 1.7995 15 7 8.9469 -2.8117 1.2834 16 6 7.0643 -5.0841 3.0456 17 6 8.1019 -4.9813 4.1337 18 1 8.5261 -4.0208 4.3864 19 6 8.5090 -6.1134 4.8073 20 7 9.4141 -6.0236 5.7571 21 14 7.7748 -7.7746 4.3706 22 1 8.5930 -8.4137 3.3088 23 1 7.7625 -8.6424 5.5755 24 1 6.3855 -7.5884 3.8804 25 7 2.1776 -1.1407 -0.0051 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6899 2.1419 -0.0004 30 1 4.1745 2.0564 0.0010 31 1 5.4894 -1.9421 -1.6578 32 1 5.3179 -3.6940 -1.3917 33 1 3.9824 -2.7693 -2.1190 34 1 5.0829 -1.8245 1.7554 35 1 5.9668 -4.3890 0.6020 36 1 4.7804 -4.2304 1.9194 37 1 7.4288 -5.7425 2.2571 38 1 6.1417 -5.4900 3.4605 39 1 9.7007 -6.8201 6.2308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335514658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:58 Heat of formation + Delta-G solvation = 64.515746 kcal Electronic energy + Delta-G solvation = -20040.323091 eV Core-core repulsion = 16982.825253 eV Total energy + Delta-G solvation = -3057.497837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37511 -37.73445 -35.88040 -34.54467 -33.80038 -32.81025 -31.68762 -29.73411 -28.77624 -26.80548 -24.97504 -23.49400 -22.72401 -21.51046 -20.64586 -17.92859 -17.41879 -16.81509 -16.41205 -15.69496 -15.47514 -15.09485 -14.65380 -14.20760 -14.09508 -13.58585 -13.50298 -13.31511 -12.98117 -12.73063 -12.52734 -12.33244 -12.19001 -12.01906 -11.93340 -11.41032 -11.30794 -11.17677 -10.88938 -10.77899 -10.75079 -10.26116 -9.96409 -9.80815 -9.63183 -9.41547 -9.30372 -8.59720 -8.37047 -6.08513 -4.09004 0.61428 0.84275 3.28800 3.36262 3.36572 3.42591 3.49839 3.77025 3.80556 3.85917 4.16743 4.33069 4.40242 4.63695 4.80021 4.85201 4.90393 5.06967 5.10161 5.18034 5.26498 5.28456 5.46608 5.50703 5.55768 5.65680 5.68053 5.80715 5.93473 6.12259 6.25448 6.27410 6.31977 6.79493 6.96632 6.99706 7.13649 7.39185 7.65921 7.92712 8.43218 8.61774 8.95568 9.51317 11.04662 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.026468 B = 0.003508 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.642672 B = 7980.856170 C = 8293.317219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.172 3.828 3 C -0.235 4.235 4 C 0.150 3.850 5 N -0.494 5.494 6 C 0.322 3.678 7 C 0.156 3.844 8 H 0.073 0.927 9 C -0.134 4.134 10 N -0.672 5.672 11 C 0.062 3.938 12 C 0.022 3.978 13 H 0.104 0.896 14 C 0.252 3.748 15 N -0.469 5.469 16 C -0.005 4.005 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.898 5.898 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.263 1.263 25 N -0.517 5.517 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.169 0.831 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.345 0.655 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.022 0.978 38 H 0.037 0.963 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.877 11.824 -12.368 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.026 3.974 3 C -0.257 4.257 4 C -0.016 4.016 5 N -0.208 5.208 6 C 0.053 3.947 7 C 0.045 3.955 8 H 0.090 0.910 9 C -0.193 4.193 10 N -0.305 5.305 11 C -0.068 4.068 12 C 0.000 4.000 13 H 0.122 0.878 14 C -0.065 4.065 15 N -0.146 5.146 16 C -0.044 4.044 17 C -0.565 4.565 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.536 5.536 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.187 1.187 25 N -0.233 5.233 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.186 0.814 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.055 0.945 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.393 11.452 -13.494 25.525 hybrid contribution -1.766 -0.274 0.744 1.936 sum -20.159 11.178 -12.750 26.341 Atomic orbital electron populations 1.20785 0.87857 1.04109 1.03622 1.21739 0.97588 0.88232 0.89872 1.22771 0.96793 1.00411 1.05712 1.23351 0.92034 0.96504 0.89727 1.68332 1.41279 0.98355 1.12809 1.23259 0.86214 0.94781 0.90397 1.20204 0.90639 0.89087 0.95603 0.90961 1.21761 1.00807 1.03200 0.93500 1.60514 1.40067 1.11674 1.18247 1.22216 0.96928 0.89476 0.98168 1.18922 0.85400 1.00759 0.94956 0.87848 1.28709 0.93805 0.91851 0.92164 1.81056 1.11745 1.10709 1.11076 1.19641 0.98453 0.89645 0.96638 1.21036 1.22003 0.96265 1.17198 0.90763 1.24995 0.94532 0.99059 0.94566 1.69909 1.30577 1.29573 1.23509 0.86811 0.80381 0.84196 0.78117 1.20222 1.21306 1.18725 1.68087 1.09742 1.30608 1.14817 0.89747 0.89855 0.90135 0.83679 0.81414 0.91216 0.91248 0.92822 0.83627 0.90098 0.93097 0.95996 0.94520 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.22 36.01 0.37 -0.23 16 2 C 0.17 1.57 6.82 -82.24 -0.56 1.01 16 3 C -0.23 -1.81 9.86 -39.32 -0.39 -2.20 16 4 C 0.15 1.39 11.30 -17.20 -0.19 1.20 16 5 N -0.49 -6.20 10.05 -10.72 -0.11 -6.31 16 6 C 0.32 4.03 6.26 -157.19 -0.98 3.04 16 7 C 0.16 1.92 3.01 -68.86 -0.21 1.71 16 8 H 0.07 0.84 7.78 -51.93 -0.40 0.44 16 9 C -0.13 -1.58 9.40 37.16 0.35 -1.23 16 10 N -0.67 -9.19 5.83 -107.95 -0.63 -9.82 16 11 C 0.06 0.88 4.85 -3.83 -0.02 0.86 16 12 C 0.02 0.39 2.35 -93.41 -0.22 0.17 16 13 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 14 C 0.25 5.33 13.67 -20.71 -0.28 5.05 16 15 N -0.47 -10.94 18.55 42.21 0.78 -10.16 16 16 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 17 C -0.53 -14.33 9.15 -34.44 -0.32 -14.64 16 18 H 0.07 2.22 7.84 -52.49 -0.41 1.81 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 20 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 21 Si 0.88 20.78 27.47 -169.99 -4.67 16.11 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 25 N -0.52 -6.09 10.26 -6.98 -0.07 -6.16 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.29 8.10 -51.93 -0.42 -0.13 16 29 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 30 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.80 7.45 -51.93 -0.39 0.41 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.34 4.66 8.29 -39.30 -0.33 4.33 16 35 H 0.08 1.13 7.43 -51.93 -0.39 0.75 16 36 H 0.05 0.64 8.05 -51.93 -0.42 0.22 16 37 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 38 H 0.04 0.74 7.20 -51.93 -0.37 0.37 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -33.77 337.58 -7.13 -40.90 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.65 Total: 0.44 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.65 Total: -3.56 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.75 Total: -58.97 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.77 -7.13 -40.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335514658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.419 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds