Wall clock time and date at job start Mon Mar 30 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38617 * 120.44623 * 2 1 4 4 C 1.38573 * 118.39906 * 179.97438 * 3 2 1 5 5 N 1.32354 * 119.10731 * 0.02562 * 4 3 2 6 6 C 1.31781 * 120.81332 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.11786 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46995 * 165.00500 * 7 6 5 9 9 C 1.52999 * 109.47030 * 285.00257 * 7 6 5 10 10 N 1.46898 * 109.46935 * 45.00643 * 7 6 5 11 11 C 1.46898 * 110.99934 * 155.00067 * 10 7 6 12 12 C 1.52997 * 109.47390 * 179.97438 * 11 10 7 13 13 H 1.09004 * 109.46881 * 54.99442 * 12 11 10 14 14 C 1.47201 * 109.47013 * 295.00280 * 12 11 10 15 15 N 8.05634 * 157.44064 * 155.46602 * 2 1 3 16 16 C 1.52997 * 109.47504 * 174.99803 * 12 11 10 17 17 C 1.50701 * 109.47212 * 184.99949 * 16 12 11 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 12 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 12 20 20 N 1.31512 * 119.99594 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47061 * 90.00257 * 21 19 17 23 23 H 1.48497 * 109.46906 * 209.99430 * 21 19 17 24 24 H 1.48498 * 109.47403 * 329.99876 * 21 19 17 25 25 N 1.31807 * 121.75831 * 0.28504 * 6 5 4 26 26 H 1.09003 * 109.47272 * 90.00138 * 1 2 3 27 27 H 1.08998 * 109.47437 * 209.99918 * 1 2 3 28 28 H 1.08996 * 109.47562 * 330.00045 * 1 2 3 29 29 H 1.08004 * 120.80017 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.44832 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.47033 * 60.00266 * 9 7 6 32 32 H 1.09007 * 109.46935 * 180.02562 * 9 7 6 33 33 H 1.08998 * 109.47543 * 300.00010 * 9 7 6 34 34 H 1.00893 * 111.00632 * 31.03927 * 10 7 6 35 35 H 1.09003 * 109.47230 * 59.99766 * 11 10 7 36 36 H 1.08998 * 109.46947 * 299.99824 * 11 10 7 37 37 H 1.09002 * 109.47153 * 64.99951 * 16 12 11 38 38 H 1.09001 * 109.46832 * 305.00142 * 16 12 11 39 39 H 0.97002 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5943 1.1455 0.0005 5 7 4.1964 -0.0331 0.0005 6 6 3.4956 -1.1492 0.0005 7 6 4.2206 -2.4704 0.0011 8 1 3.5250 -3.2664 0.2669 9 6 4.7938 -2.7381 -1.3920 10 7 5.3143 -2.4283 0.9809 11 6 5.6538 -3.7786 1.4491 12 6 6.7944 -3.6943 2.4654 13 1 6.5153 -3.0129 3.2691 14 6 8.0090 -3.1962 1.7995 15 7 8.9469 -2.8117 1.2834 16 6 7.0643 -5.0841 3.0456 17 6 8.1019 -4.9813 4.1337 18 1 8.5261 -4.0208 4.3864 19 6 8.5090 -6.1134 4.8073 20 7 9.4141 -6.0236 5.7571 21 14 7.7748 -7.7746 4.3706 22 1 8.5930 -8.4137 3.3088 23 1 7.7625 -8.6424 5.5755 24 1 6.3855 -7.5884 3.8804 25 7 2.1776 -1.1407 -0.0051 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6899 2.1419 -0.0004 30 1 4.1745 2.0564 0.0010 31 1 5.4894 -1.9421 -1.6578 32 1 5.3179 -3.6940 -1.3917 33 1 3.9824 -2.7693 -2.1190 34 1 5.0829 -1.8245 1.7554 35 1 5.9668 -4.3890 0.6020 36 1 4.7804 -4.2304 1.9194 37 1 7.4288 -5.7425 2.2571 38 1 6.1417 -5.4900 3.4605 39 1 9.7007 -6.8201 6.2308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335514658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:57 Heat of formation + Delta-G solvation = 40.729786 kcal Electronic energy + Delta-G solvation = -20041.354527 eV Core-core repulsion = 16982.825253 eV Total energy + Delta-G solvation = -3058.529274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.10033 -38.99452 -37.22625 -35.58343 -35.20155 -34.25804 -32.97395 -30.91978 -29.34280 -28.38318 -25.94212 -24.19731 -23.94182 -23.27014 -21.56456 -18.99310 -18.67804 -18.58232 -17.34868 -16.56198 -16.44731 -16.23769 -15.87426 -15.35042 -15.34009 -14.94273 -14.53905 -14.32392 -14.14546 -13.88849 -13.69383 -13.48167 -13.37365 -13.15594 -13.12367 -12.93412 -12.82916 -12.50733 -12.27731 -11.88999 -11.71546 -11.69107 -11.50938 -11.46089 -11.28521 -10.72625 -10.35215 -10.16644 -9.37806 -8.23599 -6.29270 -0.08925 0.15730 1.44737 1.45825 1.56942 2.07267 2.15105 2.42348 2.65818 2.76556 3.03608 3.13024 3.31561 3.44913 3.64027 3.95901 4.08163 4.16704 4.27385 4.36636 4.40163 4.49032 4.63991 4.66248 4.74013 4.75539 4.80015 4.87713 4.90830 5.00696 5.12434 5.25595 5.29825 5.45614 5.52257 5.64408 5.98097 6.12652 6.26966 6.36664 6.78386 6.93681 7.17920 7.35035 8.93489 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.026468 B = 0.003508 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.642672 B = 7980.856170 C = 8293.317219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.156 3.844 3 C -0.221 4.221 4 C 0.134 3.866 5 N -0.528 5.528 6 C 0.304 3.696 7 C 0.159 3.841 8 H 0.081 0.919 9 C -0.128 4.128 10 N -0.683 5.683 11 C 0.074 3.926 12 C 0.027 3.973 13 H 0.112 0.888 14 C 0.263 3.737 15 N -0.515 5.515 16 C -0.002 4.002 17 C -0.531 4.531 18 H 0.027 0.973 19 C 0.002 3.998 20 N -0.955 5.955 21 Si 0.949 3.051 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.222 1.222 25 N -0.537 5.537 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.183 0.817 30 H 0.192 0.808 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.344 0.656 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.028 0.972 38 H 0.065 0.935 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.312 11.661 -13.547 30.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.011 3.989 3 C -0.242 4.242 4 C -0.031 4.031 5 N -0.242 5.242 6 C 0.035 3.965 7 C 0.048 3.952 8 H 0.099 0.901 9 C -0.186 4.186 10 N -0.316 5.316 11 C -0.056 4.056 12 C 0.005 3.995 13 H 0.130 0.870 14 C -0.054 4.054 15 N -0.193 5.193 16 C -0.041 4.041 17 C -0.569 4.569 18 H 0.046 0.954 19 C -0.195 4.195 20 N -0.596 5.596 21 Si 0.772 3.228 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.144 1.144 25 N -0.253 5.253 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.200 0.800 30 H 0.209 0.791 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.163 0.837 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.862 11.320 -14.696 28.671 hybrid contribution -0.696 -0.044 1.129 1.327 sum -22.558 11.277 -13.566 28.637 Atomic orbital electron populations 1.20883 0.85410 1.05043 1.04625 1.22418 0.99240 0.88093 0.89195 1.23150 0.96145 1.01571 1.03328 1.23864 0.93340 0.96374 0.89473 1.68288 1.42439 0.99417 1.14074 1.23175 0.86707 0.94772 0.91797 1.20171 0.90254 0.89788 0.94995 0.90084 1.21697 1.00679 1.02430 0.93826 1.60438 1.41306 1.11330 1.18524 1.22086 0.96021 0.90145 0.97370 1.19024 0.85421 0.98916 0.96132 0.87034 1.29443 0.93884 0.90852 0.91181 1.81049 1.13160 1.12109 1.12937 1.19591 0.97682 0.91833 0.95007 1.21409 1.22776 0.94322 1.18405 0.95415 1.26061 0.95044 1.03993 0.94383 1.70095 1.33054 1.30874 1.25588 0.85684 0.81486 0.78016 0.77644 1.20186 1.21592 1.14403 1.68088 1.09447 1.32111 1.15614 0.88548 0.90470 0.87652 0.79960 0.79134 0.93265 0.90990 0.91785 0.83685 0.89587 0.90332 0.95363 0.91646 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.22 71.24 0.73 -0.12 16 2 C 0.16 2.50 6.82 42.58 0.29 2.79 16 3 C -0.22 -2.80 9.86 22.44 0.22 -2.58 16 4 C 0.13 2.28 11.30 84.69 0.96 3.24 16 5 N -0.53 -12.90 10.05 -187.84 -1.89 -14.79 16 6 C 0.30 7.32 6.26 138.75 0.87 8.19 16 7 C 0.16 3.70 3.01 44.17 0.13 3.83 16 8 H 0.08 1.72 7.78 -2.39 -0.02 1.70 16 9 C -0.13 -2.90 9.40 71.98 0.68 -2.23 16 10 N -0.68 -17.80 5.83 -495.46 -2.89 -20.69 16 11 C 0.07 1.89 4.85 86.30 0.42 2.31 16 12 C 0.03 0.93 2.35 -12.60 -0.03 0.90 16 13 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 14 C 0.26 11.15 13.67 89.42 1.22 12.37 16 15 N -0.52 -24.48 18.55 20.02 0.37 -24.11 16 16 C 0.00 -0.09 3.49 29.85 0.10 0.02 16 17 C -0.53 -29.09 9.15 25.60 0.23 -28.86 16 18 H 0.03 1.72 7.84 -2.91 -0.02 1.70 16 19 C 0.00 0.09 5.47 84.66 0.46 0.56 16 20 N -0.96 -59.87 13.96 21.45 0.30 -59.57 16 21 Si 0.95 41.80 27.47 68.60 1.88 43.68 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.22 -8.26 6.54 99.48 0.65 -7.61 16 25 N -0.54 -11.85 10.26 -176.01 -1.81 -13.66 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.10 0.34 8.10 -2.39 -0.02 0.32 16 29 H 0.18 0.83 8.06 -2.91 -0.02 0.80 16 30 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.56 7.45 -2.38 -0.02 1.54 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.34 8.98 8.29 -89.70 -0.74 8.24 16 35 H 0.09 2.16 7.43 -2.39 -0.02 2.14 16 36 H 0.08 1.64 8.05 -2.39 -0.02 1.62 16 37 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 38 H 0.07 2.36 7.20 -2.39 -0.02 2.34 16 39 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -76.45 337.58 2.52 -73.93 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.26 Total: 14.76 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 6.29 Total: 0.43 kcal Atomic # 7 Polarization: -126.90 SS G_CDS: -5.91 Total: -132.81 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.88 Total: 43.68 kcal Total: -76.45 2.52 -73.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335514658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.663 kcal (2) G-P(sol) polarization free energy of solvation -76.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds