Wall clock time and date at job start Mon Mar 30 2020 01:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38610 * 120.45132 * 2 1 4 4 C 1.38574 * 118.40214 * 179.97438 * 3 2 1 5 5 N 1.32349 * 119.10671 * 359.72938 * 4 3 2 6 6 C 1.31780 * 120.81310 * 0.54860 * 5 4 3 7 7 C 1.50706 * 119.12322 * 179.71626 * 6 5 4 8 8 H 1.09003 * 109.47232 * 194.73149 * 7 6 5 9 9 C 1.52996 * 109.46971 * 74.72748 * 7 6 5 10 10 N 1.46902 * 109.46874 * 314.72841 * 7 6 5 11 11 C 1.46896 * 110.99944 * 204.99626 * 10 7 6 12 12 C 1.53005 * 109.46981 * 180.02562 * 11 10 7 13 13 H 1.08997 * 109.47413 * 305.00268 * 12 11 10 14 14 C 1.47202 * 109.46971 * 65.00137 * 12 11 10 15 15 N 8.05634 * 157.44440 * 204.48655 * 2 1 3 16 16 C 1.52997 * 109.46770 * 185.00286 * 12 11 10 17 17 C 1.50702 * 109.46809 * 175.00217 * 16 12 11 18 18 H 1.08002 * 120.00153 * 359.97438 * 17 16 12 19 19 C 1.37877 * 119.99853 * 179.97438 * 17 16 12 20 20 N 1.31511 * 120.00340 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47196 * 59.99915 * 21 19 17 23 23 H 1.48492 * 109.47269 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46970 * 299.99887 * 21 19 17 25 25 N 1.31809 * 121.75577 * 359.43694 * 6 5 4 26 26 H 1.09002 * 109.46860 * 270.02077 * 1 2 3 27 27 H 1.09001 * 109.47171 * 30.01756 * 1 2 3 28 28 H 1.08996 * 109.47127 * 150.02013 * 1 2 3 29 29 H 1.08001 * 120.79985 * 0.02562 * 3 2 1 30 30 H 1.08001 * 120.45089 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47047 * 60.00297 * 9 7 6 32 32 H 1.09002 * 109.46993 * 180.02562 * 9 7 6 33 33 H 1.09003 * 109.47470 * 300.00256 * 9 7 6 34 34 H 1.00906 * 110.99762 * 81.04175 * 10 7 6 35 35 H 1.08999 * 109.47342 * 300.00309 * 11 10 7 36 36 H 1.08999 * 109.46871 * 60.00370 * 11 10 7 37 37 H 1.09004 * 109.47325 * 294.99438 * 16 12 11 38 38 H 1.09001 * 109.47767 * 55.00152 * 16 12 11 39 39 H 0.97001 * 119.99997 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1949 0.0000 4 6 3.5943 1.1454 0.0005 5 7 4.1964 -0.0333 0.0065 6 6 3.4956 -1.1493 0.0010 7 6 4.2204 -2.4706 0.0016 8 1 3.5250 -3.2666 -0.2645 9 6 4.7925 -2.7377 1.3952 10 7 5.3150 -2.4290 -0.9773 11 6 5.6548 -3.7795 -1.4446 12 6 6.7964 -3.6957 -2.4599 13 1 6.5181 -3.0147 -3.2642 14 6 8.0104 -3.1974 -1.7931 15 7 8.9471 -2.8123 -1.2808 16 6 7.0666 -5.0857 -3.0393 17 6 8.1052 -4.9834 -4.1265 18 1 8.5297 -4.0230 -4.3792 19 6 8.5135 -6.1160 -4.7985 20 7 7.9963 -7.2854 -4.4912 21 14 9.8004 -5.9892 -6.1467 22 1 11.0567 -5.4350 -5.5813 23 1 10.0638 -7.3384 -6.7081 24 1 9.3041 -5.0933 -7.2220 25 7 2.1775 -1.1407 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8901 -0.5135 29 1 1.6900 2.1418 0.0004 30 1 4.1746 2.0562 0.0010 31 1 3.9804 -2.7686 2.1216 32 1 5.3172 -3.6932 1.3956 33 1 5.4879 -1.9417 1.6614 34 1 6.1248 -1.9643 -0.5947 35 1 5.9670 -4.3895 -0.5970 36 1 4.7818 -4.2314 -1.9155 37 1 7.4304 -5.7438 -2.2502 38 1 6.1444 -5.4918 -3.4548 39 1 8.2839 -8.0822 -4.9637 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335514660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:00 Heat of formation + Delta-G solvation = 37.071444 kcal Electronic energy + Delta-G solvation = -19994.823300 eV Core-core repulsion = 16936.135388 eV Total energy + Delta-G solvation = -3058.687911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.01509 -39.12319 -37.30323 -35.66038 -35.17317 -34.21146 -32.89540 -30.62530 -29.29191 -27.95215 -25.93860 -24.26194 -24.14914 -23.54637 -21.76154 -18.78530 -18.40763 -18.24976 -17.47461 -16.68278 -16.55242 -16.10552 -15.95290 -15.56173 -14.92199 -14.84847 -14.49842 -14.29175 -14.13944 -13.95669 -13.85350 -13.47278 -13.39043 -13.15939 -13.06438 -13.00390 -12.68172 -12.49064 -12.35816 -12.32755 -12.00405 -11.68900 -11.45959 -11.38522 -11.15915 -10.54187 -10.29673 -10.12688 -9.44766 -8.18791 -6.26952 -0.00385 0.21745 1.41330 1.42601 1.49925 1.95091 1.98212 2.41653 2.64614 2.86424 3.16074 3.18604 3.25379 3.48981 3.68572 4.01212 4.03587 4.19921 4.25075 4.29622 4.38172 4.45079 4.62630 4.67502 4.76062 4.78288 4.80273 4.92513 4.97524 5.01564 5.09768 5.18105 5.47850 5.57143 5.63385 5.79808 5.92564 6.18825 6.22222 6.29472 6.75786 6.87568 7.24004 7.41303 8.91919 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.028113 B = 0.003295 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.742706 B = 8495.200951 C = 8654.270429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.156 3.844 3 C -0.226 4.226 4 C 0.135 3.865 5 N -0.534 5.534 6 C 0.325 3.675 7 C 0.152 3.848 8 H 0.110 0.890 9 C -0.167 4.167 10 N -0.681 5.681 11 C 0.079 3.921 12 C 0.020 3.980 13 H 0.118 0.882 14 C 0.251 3.749 15 N -0.502 5.502 16 C 0.040 3.960 17 C -0.541 4.541 18 H 0.053 0.947 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.948 3.052 22 H -0.281 1.281 23 H -0.281 1.281 24 H -0.264 1.264 25 N -0.540 5.540 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.182 0.818 30 H 0.192 0.808 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.343 0.657 35 H 0.043 0.957 36 H 0.106 0.894 37 H 0.004 0.996 38 H 0.037 0.963 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 15.687 10.527 25.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.010 3.990 3 C -0.248 4.248 4 C -0.030 4.030 5 N -0.249 5.249 6 C 0.056 3.944 7 C 0.040 3.960 8 H 0.128 0.872 9 C -0.227 4.227 10 N -0.312 5.312 11 C -0.051 4.051 12 C -0.002 4.002 13 H 0.136 0.864 14 C -0.065 4.065 15 N -0.180 5.180 16 C 0.001 3.999 17 C -0.579 4.579 18 H 0.071 0.929 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.774 3.226 22 H -0.207 1.207 23 H -0.206 1.206 24 H -0.189 1.189 25 N -0.256 5.256 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.094 0.906 29 H 0.199 0.801 30 H 0.209 0.791 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.162 0.838 35 H 0.061 0.939 36 H 0.125 0.875 37 H 0.022 0.978 38 H 0.055 0.945 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.169 15.365 10.717 24.746 hybrid contribution 0.798 0.043 -0.234 0.833 sum -15.371 15.408 10.483 24.157 Atomic orbital electron populations 1.20873 0.85501 1.04948 1.04581 1.22407 0.99218 0.88161 0.89199 1.23098 0.96182 1.01457 1.04044 1.23825 0.93361 0.96345 0.89462 1.68179 1.42615 0.99510 1.14578 1.23042 0.86633 0.94479 0.90218 1.20153 0.92963 0.91087 0.91755 0.87213 1.22351 1.01667 1.02519 0.96150 1.60359 1.11546 1.18590 1.40719 1.22003 0.97375 0.89204 0.96528 1.19202 0.84717 0.99594 0.96689 0.86404 1.29569 0.94405 0.90852 0.91660 1.80980 1.12110 1.12396 1.12498 1.18974 0.97048 0.89289 0.94571 1.21530 1.23383 0.93664 1.19359 0.92916 1.25701 0.98380 0.95207 0.99400 1.70019 1.44359 0.98950 1.42897 0.85757 0.79507 0.77448 0.79921 1.20676 1.20614 1.18868 1.68047 1.09559 1.32097 1.15928 0.88512 0.87707 0.90603 0.80069 0.79083 0.91112 0.90869 0.92635 0.83816 0.93862 0.87538 0.97797 0.94479 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.22 71.24 0.73 -0.30 16 2 C 0.16 2.82 6.82 42.57 0.29 3.11 16 3 C -0.23 -3.27 9.86 22.44 0.22 -3.05 16 4 C 0.13 2.48 11.30 84.70 0.96 3.44 16 5 N -0.53 -13.76 10.11 -187.85 -1.90 -15.66 16 6 C 0.32 8.56 6.59 138.75 0.91 9.48 16 7 C 0.15 3.84 2.99 44.17 0.13 3.97 16 8 H 0.11 2.66 7.78 -2.39 -0.02 2.64 16 9 C -0.17 -3.77 9.14 71.98 0.66 -3.11 16 10 N -0.68 -19.31 6.05 -495.44 -3.00 -22.31 16 11 C 0.08 2.32 4.92 86.31 0.42 2.75 16 12 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 13 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 14 C 0.25 10.33 12.97 89.45 1.16 11.49 16 15 N -0.50 -22.29 18.53 19.99 0.37 -21.92 16 16 C 0.04 1.87 4.42 29.85 0.13 2.00 16 17 C -0.54 -29.14 8.60 25.60 0.22 -28.92 16 18 H 0.05 2.82 7.59 -2.91 -0.02 2.79 16 19 C 0.01 0.67 5.46 84.66 0.46 1.14 16 20 N -0.92 -53.37 13.29 21.45 0.28 -53.09 16 21 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 25 N -0.54 -13.28 10.26 -176.02 -1.81 -15.09 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.52 8.10 -2.39 -0.02 0.50 16 28 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 30 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.59 7.45 -2.39 -0.02 1.57 16 33 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 34 H 0.34 10.45 7.55 -89.69 -0.68 9.78 16 35 H 0.04 1.24 7.43 -2.39 -0.02 1.23 16 36 H 0.11 2.89 8.05 -2.39 -0.02 2.87 16 37 H 0.00 0.18 8.14 -2.38 -0.02 0.17 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -68.47 340.17 2.63 -65.85 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.38 Total: 13.52 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 6.27 Total: 2.71 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -6.04 Total: -128.05 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -68.47 2.63 -65.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335514660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.917 kcal (2) G-P(sol) polarization free energy of solvation -68.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds