Wall clock time and date at job start Mon Mar 30 2020 01:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38614 * 120.45152 * 2 1 4 4 C 1.38576 * 118.40382 * 179.97438 * 3 2 1 5 5 N 1.32349 * 119.09980 * 359.72206 * 4 3 2 6 6 C 1.31778 * 120.82014 * 0.54916 * 5 4 3 7 7 C 1.50706 * 119.12241 * 179.71281 * 6 5 4 8 8 H 1.09000 * 109.47318 * 194.72778 * 7 6 5 9 9 C 1.53002 * 109.46925 * 74.73544 * 7 6 5 10 10 N 1.46893 * 109.47176 * 314.73721 * 7 6 5 11 11 C 1.46905 * 110.99865 * 204.99969 * 10 7 6 12 12 C 1.52999 * 109.47169 * 180.02562 * 11 10 7 13 13 H 1.08999 * 109.47515 * 54.99237 * 12 11 10 14 14 C 1.47207 * 109.46799 * 294.99532 * 12 11 10 15 15 N 6.84338 * 130.80842 * 242.18769 * 2 1 3 16 16 C 1.52996 * 109.47300 * 175.00002 * 12 11 10 17 17 C 1.50701 * 109.47465 * 184.99992 * 16 12 11 18 18 H 1.07999 * 119.99698 * 359.97438 * 17 16 12 19 19 C 1.37873 * 119.99885 * 179.97438 * 17 16 12 20 20 N 1.31509 * 120.00357 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99518 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47117 * 90.00186 * 21 19 17 23 23 H 1.48511 * 109.46884 * 209.99906 * 21 19 17 24 24 H 1.48492 * 109.47289 * 329.99800 * 21 19 17 25 25 N 1.31804 * 121.75357 * 359.44159 * 6 5 4 26 26 H 1.08989 * 109.47461 * 270.02883 * 1 2 3 27 27 H 1.09006 * 109.46519 * 30.02887 * 1 2 3 28 28 H 1.09003 * 109.47090 * 150.02561 * 1 2 3 29 29 H 1.08002 * 120.79864 * 359.97438 * 3 2 1 30 30 H 1.07997 * 120.44883 * 180.02562 * 4 3 2 31 31 H 1.08992 * 109.47060 * 179.97438 * 9 7 6 32 32 H 1.09004 * 109.46930 * 299.99901 * 9 7 6 33 33 H 1.09004 * 109.47059 * 59.99503 * 9 7 6 34 34 H 1.00903 * 111.00220 * 328.95080 * 10 7 6 35 35 H 1.09000 * 109.47027 * 299.99300 * 11 10 7 36 36 H 1.08993 * 109.47399 * 59.99689 * 11 10 7 37 37 H 1.08998 * 109.46770 * 304.99640 * 16 12 11 38 38 H 1.09001 * 109.47443 * 64.99745 * 16 12 11 39 39 H 0.97006 * 120.00129 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1949 0.0000 4 6 3.5944 1.1454 0.0005 5 7 4.1963 -0.0333 0.0067 6 6 3.4955 -1.1493 0.0013 7 6 4.2204 -2.4705 0.0020 8 1 3.5251 -3.2666 -0.2639 9 6 4.7924 -2.7376 1.3957 10 7 5.3150 -2.4290 -0.9768 11 6 5.6548 -3.7797 -1.4441 12 6 6.7965 -3.6959 -2.4592 13 1 7.6387 -3.1646 -2.0159 14 6 6.3362 -2.9739 -3.6567 15 7 5.9794 -2.4167 -4.5814 16 6 7.2342 -5.1083 -2.8522 17 6 8.4373 -5.0281 -3.7562 18 1 8.8482 -4.0660 -4.0241 19 6 9.0131 -6.1831 -4.2414 20 7 8.5124 -7.3546 -3.9156 21 14 10.5040 -6.0836 -5.3626 22 1 11.7421 -6.1059 -4.5430 23 1 10.5036 -7.2431 -6.2906 24 1 10.4513 -4.8230 -6.1455 25 7 2.1775 -1.1407 0.0007 26 1 -0.3634 0.0005 1.0275 27 1 -0.3632 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5134 29 1 1.6900 2.1418 -0.0004 30 1 4.1746 2.0563 0.0010 31 1 5.3163 -3.6934 1.3964 32 1 5.4878 -1.9415 1.6618 33 1 3.9802 -2.7683 2.1220 34 1 5.0843 -1.8256 -1.7519 35 1 5.9671 -4.3896 -0.5963 36 1 4.7819 -4.2316 -1.9149 37 1 7.4908 -5.6718 -1.9552 38 1 6.4194 -5.6089 -3.3752 39 1 8.9178 -8.1672 -4.2566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335514663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:04 Heat of formation + Delta-G solvation = 38.547694 kcal Electronic energy + Delta-G solvation = -20023.242597 eV Core-core repulsion = 16964.618701 eV Total energy + Delta-G solvation = -3058.623896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.13015 -39.08233 -37.26508 -35.66903 -35.24214 -34.24185 -32.87642 -30.74002 -29.37349 -28.06366 -25.97677 -24.30540 -24.08198 -23.53747 -21.58404 -18.82051 -18.47263 -18.24581 -17.70681 -16.67337 -16.62714 -16.26549 -15.94157 -15.59930 -14.99696 -14.76484 -14.51891 -14.36386 -14.14163 -13.95016 -13.81586 -13.52925 -13.24277 -13.14291 -13.09432 -12.87892 -12.83614 -12.50119 -12.38928 -12.19503 -11.96919 -11.68029 -11.54362 -11.39332 -11.15478 -10.53936 -10.37625 -10.20482 -9.48429 -8.18725 -6.26756 -0.12155 0.13106 1.40847 1.42239 1.51634 1.89683 1.92599 2.41780 2.62893 2.74952 2.99545 3.15925 3.23250 3.39481 3.61420 3.93536 4.09889 4.14372 4.26097 4.33268 4.44550 4.46988 4.62120 4.68031 4.71495 4.79281 4.85444 4.92381 4.96296 5.06442 5.09469 5.35068 5.48190 5.49808 5.63295 5.79894 5.92106 6.07849 6.18220 6.22228 6.72150 6.87383 7.14241 7.41596 8.92194 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.032774 B = 0.003298 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.130875 B = 8486.931244 C = 8727.270500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.153 3.847 3 C -0.221 4.221 4 C 0.134 3.866 5 N -0.522 5.522 6 C 0.300 3.700 7 C 0.153 3.847 8 H 0.068 0.932 9 C -0.124 4.124 10 N -0.669 5.669 11 C 0.076 3.924 12 C 0.020 3.980 13 H 0.125 0.875 14 C 0.251 3.749 15 N -0.508 5.508 16 C 0.040 3.960 17 C -0.540 4.540 18 H 0.053 0.947 19 C 0.012 3.988 20 N -0.923 5.923 21 Si 0.949 3.051 22 H -0.266 1.266 23 H -0.284 1.284 24 H -0.277 1.277 25 N -0.542 5.542 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.185 0.815 30 H 0.197 0.803 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.331 0.669 35 H 0.115 0.885 36 H 0.033 0.967 37 H 0.040 0.960 38 H 0.001 0.999 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.683 15.606 13.786 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.008 3.992 3 C -0.242 4.242 4 C -0.030 4.030 5 N -0.237 5.237 6 C 0.032 3.968 7 C 0.042 3.958 8 H 0.086 0.914 9 C -0.183 4.183 10 N -0.300 5.300 11 C -0.054 4.054 12 C -0.002 4.002 13 H 0.143 0.857 14 C -0.065 4.065 15 N -0.186 5.186 16 C 0.001 3.999 17 C -0.578 4.578 18 H 0.071 0.929 19 C -0.187 4.187 20 N -0.562 5.562 21 Si 0.775 3.225 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.202 1.202 25 N -0.258 5.258 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.202 0.798 30 H 0.214 0.786 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.148 0.852 35 H 0.133 0.867 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.246 15.421 12.860 24.620 hybrid contribution -0.129 0.115 -1.217 1.229 sum -14.374 15.536 11.643 24.157 Atomic orbital electron populations 1.20883 0.85467 1.04877 1.04733 1.22439 0.99289 0.88178 0.89339 1.23167 0.96298 1.01470 1.03303 1.23936 0.93309 0.96473 0.89301 1.68265 1.42212 0.99254 1.13968 1.23220 0.86743 0.94990 0.91863 1.20265 0.90282 0.89447 0.95837 0.91415 1.21690 1.00889 1.03260 0.92451 1.60624 1.40812 1.10860 1.17734 1.22077 0.95529 0.90069 0.97684 1.19251 0.99004 0.96401 0.85502 0.85720 1.29794 0.91114 0.91228 0.94334 1.81060 1.12034 1.13243 1.12269 1.18984 0.94887 0.89133 0.96902 1.21547 1.13877 0.92504 1.29845 0.92898 1.25700 0.99969 0.95272 0.97776 1.70028 1.42137 0.97909 1.46172 0.85689 0.80474 0.77332 0.79041 1.19091 1.20963 1.20224 1.68081 1.09673 1.32322 1.15728 0.88264 0.87613 0.90845 0.79790 0.78606 0.90197 0.91984 0.92032 0.85201 0.86706 0.94826 0.94135 0.98094 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.22 71.24 0.73 -0.37 16 2 C 0.15 2.84 6.82 42.57 0.29 3.13 16 3 C -0.22 -3.19 9.86 22.44 0.22 -2.97 16 4 C 0.13 2.44 11.30 84.70 0.96 3.39 16 5 N -0.52 -13.41 10.06 -187.85 -1.89 -15.30 16 6 C 0.30 8.03 6.26 138.75 0.87 8.89 16 7 C 0.15 3.97 3.01 44.17 0.13 4.10 16 8 H 0.07 1.78 7.78 -2.39 -0.02 1.76 16 9 C -0.12 -2.76 9.40 71.98 0.68 -2.08 16 10 N -0.67 -19.29 6.12 -495.45 -3.03 -22.32 16 11 C 0.08 2.29 4.92 86.30 0.42 2.71 16 12 C 0.02 0.75 2.42 -12.60 -0.03 0.72 16 13 H 0.13 4.40 8.14 -2.39 -0.02 4.38 16 14 C 0.25 10.55 12.98 89.43 1.16 11.71 16 15 N -0.51 -23.12 18.54 20.02 0.37 -22.74 16 16 C 0.04 1.86 4.42 29.85 0.13 1.99 16 17 C -0.54 -29.02 8.60 25.60 0.22 -28.80 16 18 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 19 C 0.01 0.65 5.46 84.65 0.46 1.12 16 20 N -0.92 -53.35 13.29 21.45 0.28 -53.06 16 21 Si 0.95 43.98 29.54 68.60 2.03 46.00 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 N -0.54 -13.70 10.26 -176.02 -1.81 -15.50 16 26 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.11 0.58 8.10 -2.38 -0.02 0.56 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 30 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.08 1.61 7.45 -2.39 -0.02 1.59 16 32 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.33 10.65 7.37 -89.69 -0.66 9.99 16 35 H 0.11 3.03 7.44 -2.39 -0.02 3.01 16 36 H 0.03 1.03 8.05 -2.39 -0.02 1.01 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 Total: -1.00 -69.12 340.00 2.59 -66.53 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.39 Total: 12.84 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 6.24 Total: 3.55 kcal Atomic # 7 Polarization: -122.86 SS G_CDS: -6.07 Total: -128.93 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.12 2.59 -66.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335514663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.081 kcal (2) G-P(sol) polarization free energy of solvation -69.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds