Wall clock time and date at job start Mon Mar 30 2020 01:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86799 * 120.00344 * 2 1 4 4 H 1.48504 * 109.46834 * 269.99482 * 3 2 1 5 5 H 1.48502 * 109.47096 * 29.99256 * 3 2 1 6 6 H 1.48501 * 109.47479 * 149.99879 * 3 2 1 7 7 C 1.38796 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99954 * 0.02562 * 7 2 1 9 9 O 1.34862 * 119.99819 * 180.02562 * 7 2 1 10 10 C 1.34797 * 116.99830 * 179.97438 * 9 7 2 11 11 O 1.21558 * 119.99755 * 0.02562 * 10 9 7 12 12 C 1.47240 * 120.00268 * 179.97438 * 10 9 7 13 13 C 1.39870 * 120.20347 * 5.89902 * 12 10 9 14 14 C 1.37802 * 119.92509 * 180.30410 * 13 12 10 15 15 Cl 1.73596 * 119.82652 * 179.74093 * 14 13 12 16 16 C 1.38738 * 120.34446 * 359.71660 * 14 13 12 17 17 C 1.38044 * 120.41599 * 359.97438 * 16 14 13 18 18 Cl 1.73601 * 119.96455 * 180.02562 * 17 16 14 19 19 C 1.39036 * 120.06748 * 0.02562 * 17 16 14 20 20 N 1.38965 * 120.17338 * 180.02562 * 19 17 16 21 21 H 0.96998 * 119.99547 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.03672 * 0.02562 * 13 12 10 23 23 H 1.07997 * 119.78790 * 180.02562 * 16 14 13 24 24 H 0.96992 * 119.99821 * 24.90270 * 20 19 17 25 25 H 0.97000 * 119.99796 * 204.90667 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4960 2.0462 -1.4001 5 1 1.4458 2.6527 0.6999 6 1 3.5459 1.4401 0.7001 7 6 2.0082 -1.2020 0.0005 8 1 1.4682 -2.1373 0.0005 9 8 3.3568 -1.2020 0.0011 10 6 3.9688 -2.4031 0.0021 11 8 3.3067 -3.4225 0.0021 12 6 5.4392 -2.4802 0.0022 13 6 6.2049 -1.3163 0.1254 14 6 7.5806 -1.3945 0.1184 15 17 8.5285 0.0525 0.2647 16 6 8.2122 -2.6237 -0.0044 17 6 7.4703 -3.7820 -0.1205 18 17 8.2727 -5.3139 -0.2728 19 6 6.0812 -3.7231 -0.1154 20 7 5.3323 -4.8879 -0.2316 21 1 -0.4849 0.8401 -0.0004 22 1 5.7184 -0.3568 0.2213 23 1 9.2909 -2.6746 -0.0084 24 1 5.7125 -5.7379 0.0396 25 1 4.4293 -4.8507 -0.5840 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016183236.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:12 Heat of formation + Delta-G solvation = -82.870907 kcal Electronic energy + Delta-G solvation = -16369.735651 eV Core-core repulsion = 13206.612267 eV Total energy + Delta-G solvation = -3163.123384 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 274.990 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.65665 -40.16390 -37.87179 -37.65642 -37.08391 -35.36052 -34.52465 -32.46198 -29.78636 -27.82616 -25.22969 -23.52311 -22.06908 -20.20062 -19.29807 -18.24735 -18.10794 -17.53571 -16.79127 -16.39476 -16.04290 -15.70089 -15.57782 -14.94636 -14.53132 -14.25327 -13.76029 -13.43376 -13.37081 -13.10203 -12.56400 -12.38084 -12.34445 -12.19342 -11.93326 -11.85372 -11.35295 -11.06834 -10.85798 -10.14149 -8.79057 -8.57503 -6.41650 -0.47160 0.04511 0.77346 1.26258 1.32061 1.34462 1.52238 1.57318 2.23665 2.31052 2.43773 2.72892 2.93927 3.65093 3.83069 4.00838 4.01612 4.50839 4.57103 4.84051 4.93556 5.21807 5.44862 5.84752 6.17904 6.47154 6.71470 6.82563 7.51029 8.54647 Molecular weight = 274.99amu Principal moments of inertia in cm(-1) A = 0.019476 B = 0.006451 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.327052 B = 4339.652767 C = 5759.923354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.246 1.246 7 C -0.403 4.403 8 H 0.064 0.936 9 O -0.246 6.246 10 C 0.462 3.538 11 O -0.563 6.563 12 C -0.183 4.183 13 C -0.013 4.013 14 C -0.092 4.092 15 Cl -0.051 7.051 16 C -0.012 4.012 17 C -0.113 4.113 18 Cl -0.037 7.037 19 C 0.283 3.717 20 N -0.844 5.844 21 H 0.290 0.710 22 H 0.143 0.857 23 H 0.178 0.822 24 H 0.409 0.591 25 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.534 -3.615 -0.214 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.169 1.169 7 C -0.479 4.479 8 H 0.082 0.918 9 O -0.155 6.155 10 C 0.312 3.688 11 O -0.460 6.460 12 C -0.190 4.190 13 C -0.033 4.033 14 C -0.121 4.121 15 Cl -0.022 7.022 16 C -0.031 4.031 17 C -0.144 4.144 18 Cl -0.008 7.008 19 C 0.169 3.831 20 N -0.388 5.388 21 H 0.100 0.900 22 H 0.161 0.839 23 H 0.195 0.805 24 H 0.241 0.759 25 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 20.252 -3.773 -0.222 20.602 hybrid contribution -0.753 -0.009 -0.004 0.753 sum 19.499 -3.782 -0.226 19.864 Atomic orbital electron populations 1.69682 1.07523 1.30322 1.47529 1.25510 0.95910 1.02558 0.94123 0.85218 0.79419 0.76097 0.80018 1.18316 1.19004 1.16894 1.20359 0.77328 0.96028 1.54157 0.91766 1.83546 1.22282 1.31721 1.77914 1.20975 0.88811 0.81898 0.77069 1.90458 1.67409 1.36151 1.51972 1.18426 0.88481 0.93933 1.18117 1.21258 0.92365 0.98156 0.91530 1.20206 0.90588 0.88802 1.12502 1.98365 1.71377 1.35762 1.96709 1.21095 1.01937 0.87664 0.92445 1.20085 0.89239 0.89155 1.15958 1.98356 1.78307 1.27463 1.96645 1.17431 0.89595 0.86627 0.89437 1.43008 1.19783 1.06196 1.69817 0.89967 0.83882 0.80456 0.75900 0.75011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.12 13.96 21.63 0.30 -53.82 15 2 C 0.02 1.13 5.50 84.89 0.47 1.59 15 3 Si 0.97 42.60 28.62 68.60 1.96 44.56 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 6 H -0.25 -10.19 7.11 99.48 0.71 -9.48 15 7 C -0.40 -24.24 10.11 67.95 0.69 -23.55 15 8 H 0.06 4.35 7.09 -2.91 -0.02 4.33 15 9 O -0.25 -12.91 7.84 10.60 0.08 -12.83 15 10 C 0.46 21.87 7.80 70.19 0.55 22.41 15 11 O -0.56 -28.71 13.06 19.65 0.26 -28.46 15 12 C -0.18 -6.59 5.89 -19.99 -0.12 -6.70 15 13 C -0.01 -0.42 9.38 22.56 0.21 -0.21 15 14 C -0.09 -2.26 6.31 22.29 0.14 -2.12 15 15 Cl -0.05 -1.10 28.94 -2.72 -0.08 -1.18 15 16 C -0.01 -0.24 9.59 22.34 0.21 -0.03 15 17 C -0.11 -2.64 6.33 22.42 0.14 -2.50 15 18 Cl -0.04 -0.69 27.77 -2.72 -0.08 -0.76 15 19 C 0.28 8.50 6.76 38.73 0.26 8.76 15 20 N -0.84 -24.38 8.31 -50.82 -0.42 -24.80 15 21 H 0.29 15.55 8.31 -92.71 -0.77 14.78 15 22 H 0.14 4.65 7.62 -2.91 -0.02 4.62 15 23 H 0.18 2.51 8.06 -2.91 -0.02 2.48 15 24 H 0.41 9.34 7.88 -92.71 -0.73 8.61 15 25 H 0.41 13.96 6.11 -92.71 -0.57 13.39 15 Total: -1.00 -65.69 262.56 4.57 -61.12 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -0.01 Total: 18.49 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 2.55 Total: -2.33 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -0.12 Total: -78.62 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: 0.34 Total: -41.28 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.96 Total: 44.56 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.15 Total: -1.94 kcal Total: -65.69 4.57 -61.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016183236.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.750 kcal (2) G-P(sol) polarization free energy of solvation -65.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds