Wall clock time and date at job start Mon Mar 30 2020 01:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.33364 * 122.53856 * 269.71341 * 12 11 10 14 14 S 1.75881 * 109.61345 * 179.86962 * 13 12 11 15 15 C 1.75882 * 90.98038 * 0.33065 * 14 13 12 16 16 Br 1.89098 * 125.20744 * 179.78329 * 15 14 13 17 17 C 1.33481 * 109.58305 * 359.80968 * 15 14 13 18 18 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 20 20 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 21 21 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 22 22 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 23 23 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 24 24 H 1.08004 * 125.18734 * 359.97438 * 13 12 11 25 25 H 1.08002 * 122.54935 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5145 -6.0261 -0.0005 13 6 2.9916 -6.5624 -1.1245 14 16 4.1438 -7.8314 -0.7303 15 6 3.8986 -7.5613 0.9902 16 35 4.7584 -8.5169 2.3772 17 6 3.0124 -6.5790 1.1671 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5566 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.8403 -3.5488 -0.7819 22 1 0.8798 -4.9817 0.8886 23 1 0.8805 -4.9812 -0.8914 24 1 2.7141 -6.2619 -2.1241 25 1 2.7072 -6.2411 2.1465 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035250991.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:17 Heat of formation + Delta-G solvation = 29.283555 kcal Electronic energy + Delta-G solvation = -11229.269249 eV Core-core repulsion = 8994.458363 eV Total energy + Delta-G solvation = -2234.810886 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 274.967 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.41811 -34.91518 -32.57699 -31.70866 -28.86599 -27.26321 -24.87796 -22.23874 -21.33346 -18.94994 -17.57226 -16.38113 -15.24450 -14.71774 -14.44985 -13.83070 -13.20397 -12.93078 -12.86481 -12.54149 -12.06499 -11.43586 -11.29334 -11.02022 -10.80418 -10.72509 -10.59964 -10.35879 -9.96003 -9.23442 -8.67779 -8.51736 -8.37590 -7.36106 -6.05913 -4.07942 0.79883 1.05188 1.74150 1.90897 2.66184 3.30638 3.36863 3.41847 4.41842 5.06517 5.16980 5.30191 5.37695 5.57531 5.81402 5.86704 6.07153 6.32885 6.54537 7.18035 7.36140 7.74622 8.08104 8.32778 8.54693 9.01088 9.57129 11.05177 Molecular weight = 274.97amu Principal moments of inertia in cm(-1) A = 0.036409 B = 0.003811 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.865818 B = 7344.632331 C = 7674.260555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.684 5.684 11 C 0.113 3.887 12 C -0.083 4.083 13 C -0.196 4.196 14 S 0.130 5.870 15 C -0.211 4.211 16 Br -0.002 7.002 17 C -0.063 4.063 18 H 0.262 0.738 19 H -0.012 1.012 20 H 0.029 0.971 21 H 0.330 0.670 22 H 0.077 0.923 23 H 0.032 0.968 24 H 0.169 0.831 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -19.429 1.270 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.315 5.315 11 C -0.019 4.019 12 C -0.096 4.096 13 C -0.333 4.333 14 S 0.392 5.608 15 C -0.407 4.407 16 Br 0.082 6.918 17 C -0.097 4.097 18 H 0.071 0.929 19 H 0.005 0.995 20 H 0.048 0.952 21 H 0.147 0.853 22 H 0.095 0.905 23 H 0.050 0.950 24 H 0.186 0.814 25 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.117 -20.653 1.624 22.634 hybrid contribution -0.993 2.104 -0.401 2.361 sum 8.124 -18.549 1.223 20.287 Atomic orbital electron populations 1.69963 1.06089 1.26850 1.50830 1.24991 0.94890 0.99401 0.95288 0.86471 0.79821 0.82925 0.78045 1.20711 1.21211 1.19731 1.21173 0.93555 0.90157 1.50458 0.91921 1.19588 0.90558 0.87211 0.95924 1.60727 1.21081 1.00480 1.49168 1.20620 0.92510 0.87798 1.00971 1.19021 1.00565 0.98911 0.91132 1.25688 1.02947 1.01784 1.02916 1.84127 1.43267 1.36772 0.96598 1.25923 1.09708 1.07756 0.97280 1.96662 1.77819 1.72766 1.44549 1.20178 0.95090 0.93616 1.00786 0.92873 0.99468 0.95241 0.85345 0.90490 0.94996 0.81370 0.83237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.94 15 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 15 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.51 -14.53 9.32 -34.44 -0.32 -14.85 15 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 15 9 C 0.19 5.00 5.44 -4.98 -0.03 4.97 15 10 N -0.68 -14.42 6.48 -116.34 -0.75 -15.18 15 11 C 0.11 1.94 5.94 -4.97 -0.03 1.91 15 12 C -0.08 -1.23 5.31 -106.25 -0.56 -1.79 15 13 C -0.20 -2.52 10.97 29.03 0.32 -2.20 15 14 S 0.13 1.52 23.34 -107.50 -2.51 -0.99 15 15 C -0.21 -2.75 6.97 29.07 0.20 -2.54 15 16 Br 0.00 -0.02 34.07 -68.01 -2.32 -2.33 15 17 C -0.06 -0.89 9.91 -41.17 -0.41 -1.30 15 18 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 19 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 15 20 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 21 H 0.33 6.70 8.71 -39.29 -0.34 6.36 15 22 H 0.08 1.32 8.13 -51.93 -0.42 0.90 15 23 H 0.03 0.53 8.12 -51.93 -0.42 0.11 15 24 H 0.17 1.87 8.06 -52.48 -0.42 1.44 15 25 H 0.15 2.06 8.06 -52.49 -0.42 1.63 15 LS Contribution 260.83 15.07 3.93 3.93 Total: -1.00 -29.23 260.83 -9.28 -38.51 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -2.42 Total: -0.32 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.93 Total: -14.31 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.02 Total: -41.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.51 Total: -0.99 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.32 Total: -2.33 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.23 -9.28 -38.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035250991.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.796 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds