Wall clock time and date at job start Mon Mar 30 2020 01:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 110.99815 * 2 1 4 4 C 1.53052 * 109.36226 * 176.81467 * 3 2 1 5 5 N 1.46962 * 109.36586 * 58.40067 * 4 3 2 6 6 C 1.46898 * 111.00028 * 176.80929 * 5 4 3 7 7 C 1.53006 * 109.47006 * 66.04436 * 6 5 4 8 8 C 1.50698 * 109.47184 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99819 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00046 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99944 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 7 13 13 H 1.48510 * 109.46866 * 90.00390 * 12 10 8 14 14 H 1.48502 * 109.47245 * 210.00175 * 12 10 8 15 15 H 1.48494 * 109.47271 * 330.00312 * 12 10 8 16 16 C 1.46956 * 110.87777 * 300.67994 * 5 4 3 17 17 H 1.08999 * 109.48958 * 299.34981 * 16 5 4 18 18 C 1.50702 * 109.48539 * 179.28857 * 16 5 4 19 19 C 1.38228 * 119.99863 * 319.72411 * 18 16 5 20 20 C 1.38234 * 119.99834 * 179.78923 * 19 18 16 21 21 C 1.38235 * 120.00251 * 0.44295 * 20 19 18 22 22 C 1.38240 * 119.99533 * 359.81248 * 21 20 19 23 23 C 1.38231 * 120.00287 * 359.97438 * 22 21 20 24 24 C 1.46954 * 110.99661 * 236.20127 * 2 1 3 25 25 H 1.08997 * 109.47435 * 56.04589 * 1 2 3 26 26 H 1.08996 * 109.47160 * 176.04796 * 1 2 3 27 27 H 1.09008 * 109.46959 * 296.04808 * 1 2 3 28 28 H 1.08996 * 109.49567 * 56.84506 * 3 2 1 29 29 H 1.09007 * 109.50513 * 296.78894 * 3 2 1 30 30 H 1.08993 * 109.48703 * 298.43050 * 4 3 2 31 31 H 1.09005 * 109.48771 * 178.36671 * 4 3 2 32 32 H 1.09001 * 109.47062 * 306.04690 * 6 5 4 33 33 H 1.08993 * 109.47084 * 186.04138 * 6 5 4 34 34 H 1.09001 * 109.46801 * 300.00064 * 7 6 5 35 35 H 1.09001 * 109.46998 * 59.99660 * 7 6 5 36 36 H 0.96997 * 119.99752 * 179.97438 * 11 10 8 37 37 H 1.07997 * 120.00624 * 359.97438 * 19 18 16 38 38 H 1.08005 * 120.00245 * 180.27241 * 20 19 18 39 39 H 1.07999 * 120.00764 * 179.83226 * 21 20 19 40 40 H 1.08000 * 120.00078 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.00595 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.48814 * 303.15071 * 24 2 1 43 43 H 1.09003 * 109.49186 * 63.22055 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0802 5 7 4.0501 0.5659 -1.0599 6 6 5.5190 0.5659 -1.0600 7 6 6.0291 -0.2037 0.1601 8 6 7.5361 -0.2042 0.1597 9 1 8.0761 0.2949 -0.6314 10 6 8.2255 -0.8409 1.1698 11 7 7.5680 -1.4483 2.1334 12 14 10.0935 -0.8409 1.1697 13 1 10.5885 0.3435 1.9163 14 1 10.5886 -2.0797 1.8221 15 1 10.5885 -0.7866 -0.2293 16 6 3.5234 -0.8061 -1.0599 17 1 3.8253 -1.3115 -0.1426 18 6 4.0686 -1.5539 -2.2493 19 6 4.1779 -0.9205 -3.4730 20 6 4.6820 -1.6052 -4.5630 21 6 5.0684 -2.9259 -4.4314 22 6 4.9541 -3.5608 -3.2087 23 6 4.4541 -2.8749 -2.1177 24 6 1.9956 -0.7632 -1.1401 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 -0.3633 0.4513 0.9234 28 1 1.6013 1.9129 0.8602 29 1 1.6937 1.8777 -0.9172 30 1 3.8253 0.8480 1.0105 31 1 3.9178 2.3449 0.0511 32 1 5.8823 1.5928 -1.0197 33 1 5.8823 0.0873 -1.9694 34 1 5.6658 0.2749 1.0695 35 1 5.6658 -1.2306 0.1198 36 1 8.0530 -1.8965 2.8438 37 1 3.8722 0.1100 -3.5770 38 1 4.7716 -1.1090 -5.5181 39 1 5.4597 -3.4617 -5.2835 40 1 5.2563 -4.5925 -3.1057 41 1 4.3652 -3.3707 -1.1625 42 1 1.6013 -1.7789 -1.1110 43 1 1.6937 -0.2821 -2.0704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036998926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:27 Heat of formation + Delta-G solvation = 35.601961 kcal Electronic energy + Delta-G solvation = -21983.553171 eV Core-core repulsion = 19028.341881 eV Total energy + Delta-G solvation = -2955.211290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86256 -38.05957 -35.62082 -32.92581 -32.16447 -30.50999 -30.01112 -28.72433 -27.33740 -24.51618 -23.67302 -23.06571 -22.17620 -21.08083 -20.72972 -18.62200 -16.48970 -16.43525 -15.50357 -15.26403 -15.07932 -14.83391 -14.49064 -14.15547 -14.09761 -13.61214 -13.13037 -12.96930 -12.77353 -12.41032 -12.34470 -12.22407 -11.82805 -11.62070 -11.34169 -11.16885 -11.00869 -10.87837 -10.70036 -10.60737 -10.44194 -10.23055 -9.85153 -9.64859 -9.09123 -8.50781 -8.33292 -8.26940 -8.20354 -7.49801 -5.97713 -3.99826 1.73183 1.81370 3.32645 3.38955 3.42760 4.02752 4.18377 4.45134 4.55258 5.08039 5.19286 5.27957 5.29518 5.35916 5.37862 5.43072 5.46218 5.52425 5.68987 5.72125 5.75216 5.85923 5.89550 5.94136 6.00011 6.15069 6.27748 6.33507 6.38071 6.44553 6.50449 6.73699 6.83580 6.87139 6.96116 7.05156 7.14600 7.16055 7.39173 7.57041 7.58971 7.73142 7.89348 8.03563 8.46331 9.06722 9.63812 11.13280 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.006812 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.317780 B = 4109.461941 C = 5474.495897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.544 5.544 3 C 0.060 3.940 4 C 0.054 3.946 5 N -0.536 5.536 6 C 0.055 3.945 7 C -0.005 4.005 8 C -0.515 4.515 9 H 0.053 0.947 10 C 0.059 3.941 11 N -0.894 5.894 12 Si 0.889 3.111 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.122 3.878 17 H 0.070 0.930 18 C -0.063 4.063 19 C -0.093 4.093 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.103 4.103 24 C 0.071 3.929 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.015 0.985 35 H 0.020 0.980 36 H 0.259 0.741 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.074 0.926 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.373 0.627 -9.042 15.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.269 5.269 3 C -0.069 4.069 4 C -0.075 4.075 5 N -0.260 5.260 6 C -0.072 4.072 7 C -0.043 4.043 8 C -0.554 4.554 9 H 0.072 0.928 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.717 3.283 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.013 3.987 17 H 0.088 0.912 18 C -0.063 4.063 19 C -0.111 4.111 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.121 4.121 24 C -0.058 4.058 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.033 0.967 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.143 0.857 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.092 0.908 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.364 0.547 -8.879 15.232 hybrid contribution 1.234 -0.082 0.188 1.251 sum -11.130 0.466 -8.691 14.129 Atomic orbital electron populations 1.22321 0.87656 1.01595 1.00498 1.62089 1.07259 1.14346 1.43181 1.22197 0.95624 0.88768 1.00262 1.22112 0.92778 0.98647 0.93953 1.62564 1.10016 1.11878 1.41517 1.22350 0.83698 1.00486 1.00630 1.19607 0.96210 0.95737 0.92737 1.21133 0.91665 1.33917 1.08729 0.92824 1.24989 0.98212 0.95431 0.95605 1.69968 1.35272 1.35633 1.12465 0.86643 0.86119 0.77402 0.78151 1.20714 1.21265 1.19889 1.20521 0.92438 0.89923 0.95776 0.91218 1.19659 0.98564 0.93617 0.94504 1.21002 0.98427 0.99818 0.91895 1.21076 1.00444 0.94771 0.98579 1.21041 1.00849 0.95218 0.97379 1.21029 1.00151 0.99828 0.93057 1.21060 0.98148 0.94286 0.98645 1.22160 0.94269 0.97901 0.91424 0.95934 0.91639 0.91512 0.90779 0.94511 0.92819 0.90584 0.92255 0.91508 0.96660 0.96202 0.93106 0.85667 0.86722 0.86815 0.86521 0.86206 0.90797 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.63 60.07 0.58 0.89 16 2 N -0.54 -7.92 4.97 -242.75 -1.21 -9.13 16 3 C 0.06 0.85 5.62 -3.77 -0.02 0.82 16 4 C 0.05 0.91 5.27 -3.76 -0.02 0.89 16 5 N -0.54 -9.68 4.07 -227.87 -0.93 -10.61 16 6 C 0.06 1.17 4.82 -3.82 -0.02 1.15 16 7 C 0.00 -0.13 4.26 -27.88 -0.12 -0.24 16 8 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 9 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 12 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.12 2.15 1.61 -68.81 -0.11 2.04 16 17 H 0.07 1.46 6.31 -51.93 -0.33 1.13 16 18 C -0.06 -1.07 3.80 -104.62 -0.40 -1.46 16 19 C -0.09 -1.47 8.13 -39.59 -0.32 -1.79 16 20 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 21 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 22 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 23 C -0.10 -1.74 9.67 -39.58 -0.38 -2.12 16 24 C 0.07 1.06 4.87 -3.77 -0.02 1.04 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 27 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 1.06 6.63 -51.93 -0.34 0.72 16 31 H 0.08 1.22 8.11 -51.93 -0.42 0.80 16 32 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.07 1.46 6.26 -51.93 -0.32 1.14 16 34 H 0.02 0.42 6.62 -51.93 -0.34 0.08 16 35 H 0.02 0.55 6.43 -51.93 -0.33 0.21 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.13 1.93 7.73 -52.49 -0.41 1.53 16 38 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.12 2.02 8.04 -52.49 -0.42 1.59 16 42 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -30.53 336.88 -10.88 -41.41 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.11 Total: 1.50 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -2.43 Total: -18.89 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -1.40 Total: -46.03 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.53 -10.88 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036998926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.012 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds