Wall clock time and date at job start Mon Mar 30 2020 01:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 110.99815 * 2 1 4 4 C 1.53052 * 109.36226 * 176.81467 * 3 2 1 5 5 N 1.46962 * 109.36586 * 58.40067 * 4 3 2 6 6 C 1.46898 * 111.00028 * 176.80929 * 5 4 3 7 7 C 1.53006 * 109.47006 * 66.04436 * 6 5 4 8 8 C 1.50698 * 109.47184 * 179.97438 * 7 6 5 9 9 H 1.08005 * 119.99819 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00046 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99944 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 180.02562 * 10 8 7 13 13 H 1.48510 * 109.46866 * 90.00390 * 12 10 8 14 14 H 1.48502 * 109.47245 * 210.00175 * 12 10 8 15 15 H 1.48494 * 109.47271 * 330.00312 * 12 10 8 16 16 C 1.46956 * 110.87777 * 300.67994 * 5 4 3 17 17 H 1.08999 * 109.48958 * 299.34981 * 16 5 4 18 18 C 1.50702 * 109.48539 * 179.28857 * 16 5 4 19 19 C 1.38228 * 119.99863 * 319.72411 * 18 16 5 20 20 C 1.38234 * 119.99834 * 179.78923 * 19 18 16 21 21 C 1.38235 * 120.00251 * 0.44295 * 20 19 18 22 22 C 1.38240 * 119.99533 * 359.81248 * 21 20 19 23 23 C 1.38231 * 120.00287 * 359.97438 * 22 21 20 24 24 C 1.46954 * 110.99661 * 236.20127 * 2 1 3 25 25 H 1.08997 * 109.47435 * 56.04589 * 1 2 3 26 26 H 1.08996 * 109.47160 * 176.04796 * 1 2 3 27 27 H 1.09008 * 109.46959 * 296.04808 * 1 2 3 28 28 H 1.08996 * 109.49567 * 56.84506 * 3 2 1 29 29 H 1.09007 * 109.50513 * 296.78894 * 3 2 1 30 30 H 1.08993 * 109.48703 * 298.43050 * 4 3 2 31 31 H 1.09005 * 109.48771 * 178.36671 * 4 3 2 32 32 H 1.09001 * 109.47062 * 306.04690 * 6 5 4 33 33 H 1.08993 * 109.47084 * 186.04138 * 6 5 4 34 34 H 1.09001 * 109.46801 * 300.00064 * 7 6 5 35 35 H 1.09001 * 109.46998 * 59.99660 * 7 6 5 36 36 H 0.96997 * 119.99752 * 179.97438 * 11 10 8 37 37 H 1.07997 * 120.00624 * 359.97438 * 19 18 16 38 38 H 1.08005 * 120.00245 * 180.27241 * 20 19 18 39 39 H 1.07999 * 120.00764 * 179.83226 * 21 20 19 40 40 H 1.08000 * 120.00078 * 180.02562 * 22 21 20 41 41 H 1.07994 * 120.00595 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.48814 * 303.15071 * 24 2 1 43 43 H 1.09003 * 109.49186 * 63.22055 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 0.0802 5 7 4.0501 0.5659 -1.0599 6 6 5.5190 0.5659 -1.0600 7 6 6.0291 -0.2037 0.1601 8 6 7.5361 -0.2042 0.1597 9 1 8.0761 0.2949 -0.6314 10 6 8.2255 -0.8409 1.1698 11 7 7.5680 -1.4483 2.1334 12 14 10.0935 -0.8409 1.1697 13 1 10.5885 0.3435 1.9163 14 1 10.5886 -2.0797 1.8221 15 1 10.5885 -0.7866 -0.2293 16 6 3.5234 -0.8061 -1.0599 17 1 3.8253 -1.3115 -0.1426 18 6 4.0686 -1.5539 -2.2493 19 6 4.1779 -0.9205 -3.4730 20 6 4.6820 -1.6052 -4.5630 21 6 5.0684 -2.9259 -4.4314 22 6 4.9541 -3.5608 -3.2087 23 6 4.4541 -2.8749 -2.1177 24 6 1.9956 -0.7632 -1.1401 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 -0.3633 0.4513 0.9234 28 1 1.6013 1.9129 0.8602 29 1 1.6937 1.8777 -0.9172 30 1 3.8253 0.8480 1.0105 31 1 3.9178 2.3449 0.0511 32 1 5.8823 1.5928 -1.0197 33 1 5.8823 0.0873 -1.9694 34 1 5.6658 0.2749 1.0695 35 1 5.6658 -1.2306 0.1198 36 1 8.0530 -1.8965 2.8438 37 1 3.8722 0.1100 -3.5770 38 1 4.7716 -1.1090 -5.5181 39 1 5.4597 -3.4617 -5.2835 40 1 5.2563 -4.5925 -3.1057 41 1 4.3652 -3.3707 -1.1625 42 1 1.6013 -1.7789 -1.1110 43 1 1.6937 -0.2821 -2.0704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036998926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:27 Heat of formation + Delta-G solvation = 16.542229 kcal Electronic energy + Delta-G solvation = -21984.379663 eV Core-core repulsion = 19028.341881 eV Total energy + Delta-G solvation = -2956.037782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.19935 -39.26925 -37.06087 -34.97832 -33.50835 -31.75971 -31.70386 -29.97938 -28.86576 -26.14882 -25.01630 -24.61043 -23.38839 -22.71926 -21.99669 -20.06682 -18.59868 -17.71794 -16.80900 -16.62713 -16.55176 -16.35711 -16.01761 -15.50431 -15.25993 -15.01398 -14.60561 -14.47262 -14.19853 -14.07794 -13.57709 -13.52558 -13.24566 -13.10992 -12.91268 -12.64268 -12.53054 -12.43350 -12.34440 -11.95742 -11.84710 -11.75401 -11.62611 -11.42417 -11.20708 -10.55223 -9.71136 -9.51675 -9.33908 -9.12574 -8.20753 -6.32503 0.52393 0.60331 1.36512 1.37893 1.49057 2.38350 2.87723 2.96269 3.10990 3.11683 3.85171 3.95500 4.04524 4.15205 4.22045 4.28214 4.33979 4.37879 4.41974 4.55080 4.61736 4.64726 4.71296 4.75158 4.76381 4.79134 4.92553 4.98470 5.00374 5.02026 5.15365 5.17135 5.27191 5.46667 5.56202 5.63744 5.68994 5.71283 5.80737 6.00287 6.01700 6.14654 6.19575 6.26719 6.34656 6.84372 7.36324 8.90182 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.006812 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.317780 B = 4109.461941 C = 5474.495897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.568 5.568 3 C 0.069 3.931 4 C 0.051 3.949 5 N -0.521 5.521 6 C 0.073 3.927 7 C 0.011 3.989 8 C -0.538 4.538 9 H 0.058 0.942 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.961 3.039 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.127 3.873 17 H 0.023 0.977 18 C -0.080 4.080 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.130 4.130 24 C 0.081 3.919 25 H 0.035 0.965 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.015 0.985 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.063 0.937 34 H -0.015 1.015 35 H -0.009 1.009 36 H 0.262 0.738 37 H 0.129 0.871 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 1.274 -11.202 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.293 5.293 3 C -0.059 4.059 4 C -0.077 4.077 5 N -0.244 5.244 6 C -0.054 4.054 7 C -0.027 4.027 8 C -0.577 4.577 9 H 0.076 0.924 10 C -0.195 4.195 11 N -0.572 5.572 12 Si 0.786 3.214 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.188 1.188 16 C 0.018 3.982 17 H 0.041 0.959 18 C -0.081 4.081 19 C -0.119 4.119 20 C -0.145 4.145 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.047 4.047 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.003 0.997 35 H 0.009 0.991 36 H 0.071 0.929 37 H 0.147 0.853 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.152 0.848 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.424 1.204 -11.047 16.668 hybrid contribution 1.213 -0.322 0.881 1.533 sum -11.211 0.882 -10.166 15.160 Atomic orbital electron populations 1.22373 0.85227 1.02532 1.01666 1.62074 1.09540 1.14496 1.43181 1.22127 0.92972 0.89060 1.01766 1.22198 0.95419 0.98414 0.91696 1.62618 1.07781 1.12391 1.41582 1.22039 0.85853 0.99559 0.97987 1.19396 0.95266 0.94454 0.93610 1.21563 0.93042 1.34049 1.08998 0.92420 1.25930 1.03681 0.94807 0.95054 1.70117 1.37463 1.36392 1.13207 0.85503 0.79502 0.77722 0.78688 1.19658 1.20782 1.18763 1.20449 0.94526 0.88924 0.94275 0.95907 1.19681 0.99688 0.93790 0.94913 1.21089 0.98962 1.00076 0.91808 1.21459 0.98879 0.94909 0.99242 1.21439 0.99744 0.95332 0.97729 1.21307 0.99575 1.00748 0.93034 1.21121 1.00000 0.94875 0.98906 1.22026 0.92012 0.98571 0.92082 0.94615 0.90922 0.90353 0.88892 0.93127 0.96651 0.89531 0.91886 0.91819 0.99670 0.99066 0.92938 0.85318 0.83615 0.83527 0.84779 0.87966 0.90266 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.63 127.69 1.23 1.84 16 2 N -0.57 -16.24 4.97 -921.93 -4.58 -20.82 16 3 C 0.07 1.88 5.62 86.31 0.48 2.37 16 4 C 0.05 1.78 5.27 86.31 0.45 2.24 16 5 N -0.52 -19.28 4.07 -874.86 -3.56 -22.85 16 6 C 0.07 3.21 4.82 86.31 0.42 3.62 16 7 C 0.01 0.60 4.26 29.85 0.13 0.73 16 8 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 9 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 10 C 0.00 0.18 5.46 84.65 0.46 0.65 16 11 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 12 Si 0.96 45.39 29.54 68.60 2.03 47.42 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 16 C 0.13 4.68 1.61 44.18 0.07 4.76 16 17 H 0.02 1.05 6.31 -2.39 -0.02 1.04 16 18 C -0.08 -2.79 3.80 -19.87 -0.08 -2.87 16 19 C -0.10 -3.09 8.13 22.27 0.18 -2.91 16 20 C -0.13 -3.31 10.05 22.27 0.22 -3.08 16 21 C -0.12 -3.19 10.05 22.27 0.22 -2.97 16 22 C -0.13 -3.81 10.05 22.27 0.22 -3.59 16 23 C -0.13 -4.60 9.67 22.27 0.22 -4.39 16 24 C 0.08 2.43 4.87 86.31 0.42 2.85 16 25 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 27 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 30 H 0.02 0.65 6.63 -2.39 -0.02 0.63 16 31 H 0.09 2.78 8.11 -2.38 -0.02 2.77 16 32 H 0.06 2.69 8.10 -2.39 -0.02 2.67 16 33 H 0.06 2.83 6.26 -2.39 -0.01 2.81 16 34 H -0.01 -0.90 6.62 -2.39 -0.02 -0.91 16 35 H -0.01 -0.54 6.43 -2.39 -0.02 -0.55 16 36 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 37 H 0.13 3.79 7.73 -2.91 -0.02 3.76 16 38 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 39 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 40 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 41 H 0.10 3.82 8.04 -2.91 -0.02 3.79 16 42 H 0.08 2.25 8.09 -2.39 -0.02 2.23 16 43 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -68.21 336.88 0.02 -68.19 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.96 Total: 18.10 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 4.89 Total: -32.04 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -7.86 Total: -101.65 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -68.21 0.02 -68.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036998926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.728 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds