Wall clock time and date at job start Mon Mar 30 2020 01:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38286 * 119.93312 * 2 1 4 4 C 1.38092 * 120.09029 * 179.69956 * 3 2 1 5 5 C 1.38937 * 119.95200 * 0.52966 * 4 3 2 6 6 N 1.39664 * 120.07174 * 179.74595 * 5 4 3 7 7 S 1.65605 * 119.99763 * 313.56744 * 6 5 4 8 8 O 1.42099 * 106.40283 * 184.91407 * 7 6 5 9 9 O 1.42094 * 106.39984 * 51.99266 * 7 6 5 10 10 C 1.76201 * 107.21883 * 298.44941 * 7 6 5 11 11 H 1.08005 * 119.99606 * 11.48037 * 10 7 6 12 12 C 1.37877 * 120.00117 * 191.20224 * 10 7 6 13 13 N 1.31514 * 119.99905 * 0.27372 * 12 10 7 14 14 Si 1.86799 * 120.00039 * 180.27856 * 12 10 7 15 15 H 1.48496 * 109.47177 * 59.99540 * 14 12 10 16 16 H 1.48493 * 109.47131 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46830 * 299.99998 * 14 12 10 18 18 C 1.38877 * 119.85990 * 359.47252 * 5 4 3 19 19 C 1.38239 * 119.91098 * 0.27385 * 18 5 4 20 20 Cl 1.73603 * 119.97219 * 180.02562 * 19 18 5 21 21 H 1.09000 * 109.47619 * 270.02205 * 1 2 3 22 22 H 1.09000 * 109.47661 * 30.02659 * 1 2 3 23 23 H 1.09011 * 109.47080 * 150.02349 * 1 2 3 24 24 H 1.08005 * 119.95605 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.02158 * 180.27718 * 4 3 2 26 26 H 0.97001 * 120.00352 * 133.56641 * 6 5 4 27 27 H 0.97001 * 119.99763 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.03990 * 180.25623 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5778 1.2022 0.0063 5 6 4.2749 0.0003 0.0014 6 7 5.6715 0.0013 0.0024 7 16 6.4995 0.9949 -1.0318 8 8 7.8764 0.6820 -0.8726 9 8 5.9721 2.3006 -0.8420 10 6 6.0674 0.5172 -2.6719 11 1 5.2436 -0.1614 -2.8373 12 6 6.7771 1.0142 -3.7444 13 7 7.7802 1.8406 -3.5429 14 14 6.3140 0.5139 -5.4835 15 1 4.9134 0.9226 -5.7598 16 1 7.2236 1.1811 -6.4493 17 1 6.4366 -0.9594 -5.6239 18 6 3.5799 -1.2020 0.0014 19 6 2.1975 -1.1992 0.0005 20 17 1.3271 -2.7013 0.0011 21 1 -0.3634 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3634 -0.8903 -0.5135 24 1 1.6551 2.1327 -0.0004 25 1 4.1156 2.1388 0.0108 26 1 6.1565 -0.5800 0.6088 27 1 8.2797 2.1900 -4.2974 28 1 4.1187 -2.1379 0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509359.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:47 Heat of formation + Delta-G solvation = -81.864048 kcal Electronic energy + Delta-G solvation = -16957.559195 eV Core-core repulsion = 13932.356272 eV Total energy + Delta-G solvation = -3025.202922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.38102 -36.49062 -35.43427 -34.80895 -34.15701 -33.16377 -30.89333 -30.46990 -26.21964 -25.77831 -22.67712 -21.26192 -19.19176 -17.87417 -17.27991 -16.37979 -15.43534 -15.17185 -15.06850 -14.35724 -14.05400 -13.95355 -13.56684 -13.41717 -12.49616 -12.33078 -12.08173 -11.87597 -11.46186 -11.39551 -11.26434 -11.23708 -10.80768 -10.66522 -10.51241 -10.46725 -10.23339 -9.84698 -9.30028 -8.95470 -8.59300 -7.85121 -6.76979 -5.40990 1.39039 1.47129 2.07681 2.31131 3.06200 3.10290 3.16593 3.83940 3.99944 4.43613 4.60716 4.95298 5.00766 5.33258 5.46053 5.60501 5.63842 5.68132 5.83473 5.94924 6.02153 6.32620 6.38005 6.49174 6.64241 6.87213 7.08249 7.25337 7.68557 7.89810 8.81097 10.16416 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.006395 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.865343 B = 4377.296550 C = 4837.748354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.087 4.087 4 C -0.139 4.139 5 C 0.187 3.813 6 N -1.074 6.074 7 S 2.703 3.297 8 O -0.988 6.988 9 O -1.001 7.001 10 C -1.014 5.014 11 H 0.104 0.896 12 C 0.134 3.866 13 N -0.841 5.841 14 Si 0.922 3.078 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.263 1.263 18 C -0.134 4.134 19 C -0.020 4.020 20 Cl -0.079 7.079 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.134 0.866 25 H 0.164 0.836 26 H 0.413 0.587 27 H 0.292 0.708 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 -4.959 5.730 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.106 4.106 3 C -0.105 4.105 4 C -0.160 4.160 5 C 0.089 3.911 6 N -0.818 5.818 7 S 2.805 3.195 8 O -0.978 6.978 9 O -0.991 6.991 10 C -1.148 5.148 11 H 0.122 0.878 12 C -0.085 4.085 13 N -0.470 5.470 14 Si 0.745 3.255 15 H -0.187 1.187 16 H -0.200 1.200 17 H -0.188 1.188 18 C -0.156 4.156 19 C -0.048 4.048 20 Cl -0.050 7.050 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.152 0.848 25 H 0.182 0.818 26 H 0.247 0.753 27 H 0.103 0.897 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.158 -4.157 5.858 13.270 hybrid contribution -0.235 -1.142 -1.127 1.621 sum -11.393 -5.299 4.732 13.426 Atomic orbital electron populations 1.20785 0.90659 1.03118 1.02347 1.19679 0.96461 0.91438 1.03034 1.20848 0.93508 0.96941 0.99248 1.22112 0.94830 0.99262 0.99762 1.17236 0.83351 0.92729 0.97824 1.54113 1.11365 1.61407 1.54885 1.00964 0.71634 0.72382 0.74570 1.93398 1.32658 1.84277 1.87494 1.93324 1.80126 1.38241 1.87432 1.30365 1.28019 1.42820 1.13578 0.87824 1.24738 0.91424 0.90766 1.01553 1.69906 1.16365 1.25543 1.35228 0.86171 0.79484 0.79790 0.80030 1.18704 1.20031 1.18765 1.20992 0.92019 0.98450 1.04166 1.20471 0.91676 0.86178 1.06427 1.98327 1.76794 1.32865 1.97037 0.91212 0.91317 0.91206 0.84812 0.81824 0.75265 0.89717 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.61 36.00 0.35 -0.85 15 2 C -0.10 -1.46 5.88 -104.56 -0.62 -2.08 15 3 C -0.09 -1.29 9.69 -39.62 -0.38 -1.67 15 4 C -0.14 -2.51 9.23 -39.38 -0.36 -2.88 15 5 C 0.19 3.43 6.13 -83.79 -0.51 2.92 15 6 N -1.07 -21.03 5.77 32.41 0.19 -20.84 15 7 S 2.70 69.09 5.05 -107.50 -0.54 68.55 15 8 O -0.99 -28.08 17.58 -57.17 -1.01 -29.08 15 9 O -1.00 -27.17 15.16 -57.17 -0.87 -28.04 15 10 C -1.01 -27.39 9.61 30.60 0.29 -27.09 15 11 H 0.10 2.62 7.81 -52.48 -0.41 2.21 15 12 C 0.13 3.66 5.46 -17.82 -0.10 3.57 15 13 N -0.84 -24.14 12.84 55.43 0.71 -23.43 15 14 Si 0.92 20.38 29.54 -169.99 -5.02 15.36 15 15 H -0.26 -5.66 7.11 56.52 0.40 -5.25 15 16 H -0.28 -5.80 7.11 56.52 0.40 -5.39 15 17 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 18 C -0.13 -2.15 9.75 -39.34 -0.38 -2.54 15 19 C -0.02 -0.30 6.31 -39.53 -0.25 -0.55 15 20 Cl -0.08 -1.01 27.28 -51.86 -1.41 -2.43 15 21 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 22 H 0.07 0.64 8.08 -51.93 -0.42 0.22 15 23 H 0.07 0.73 6.89 -51.92 -0.36 0.37 15 24 H 0.13 1.61 8.06 -52.48 -0.42 1.19 15 25 H 0.16 3.25 5.72 -52.49 -0.30 2.95 15 26 H 0.41 6.75 8.96 -34.47 -0.31 6.44 15 27 H 0.29 7.56 8.31 -40.82 -0.34 7.22 15 28 H 0.14 1.95 8.06 -52.49 -0.42 1.52 15 LS Contribution 276.25 15.07 4.16 4.16 Total: -1.00 -32.50 276.25 -7.96 -40.46 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -2.20 Total: 6.47 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -1.97 Total: -31.18 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.90 Total: -44.27 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -1.87 Total: -57.12 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 69.09 SS G_CDS: -0.54 Total: 68.55 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.41 Total: -2.43 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.50 -7.96 -40.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509359.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.405 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds