Wall clock time and date at job start Mon Mar 30 2020 01:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38286 * 119.93312 * 2 1 4 4 C 1.38092 * 120.09029 * 179.69956 * 3 2 1 5 5 C 1.38937 * 119.95200 * 0.52966 * 4 3 2 6 6 N 1.39664 * 120.07174 * 179.74595 * 5 4 3 7 7 S 1.65605 * 119.99763 * 313.56744 * 6 5 4 8 8 O 1.42099 * 106.40283 * 184.91407 * 7 6 5 9 9 O 1.42094 * 106.39984 * 51.99266 * 7 6 5 10 10 C 1.76201 * 107.21883 * 298.44941 * 7 6 5 11 11 H 1.08005 * 119.99606 * 11.48037 * 10 7 6 12 12 C 1.37877 * 120.00117 * 191.20224 * 10 7 6 13 13 N 1.31514 * 119.99905 * 0.27372 * 12 10 7 14 14 Si 1.86799 * 120.00039 * 180.27856 * 12 10 7 15 15 H 1.48496 * 109.47177 * 59.99540 * 14 12 10 16 16 H 1.48493 * 109.47131 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46830 * 299.99998 * 14 12 10 18 18 C 1.38877 * 119.85990 * 359.47252 * 5 4 3 19 19 C 1.38239 * 119.91098 * 0.27385 * 18 5 4 20 20 Cl 1.73603 * 119.97219 * 180.02562 * 19 18 5 21 21 H 1.09000 * 109.47619 * 270.02205 * 1 2 3 22 22 H 1.09000 * 109.47661 * 30.02659 * 1 2 3 23 23 H 1.09011 * 109.47080 * 150.02349 * 1 2 3 24 24 H 1.08005 * 119.95605 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.02158 * 180.27718 * 4 3 2 26 26 H 0.97001 * 120.00352 * 133.56641 * 6 5 4 27 27 H 0.97001 * 119.99763 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.03990 * 180.25623 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5778 1.2022 0.0063 5 6 4.2749 0.0003 0.0014 6 7 5.6715 0.0013 0.0024 7 16 6.4995 0.9949 -1.0318 8 8 7.8764 0.6820 -0.8726 9 8 5.9721 2.3006 -0.8420 10 6 6.0674 0.5172 -2.6719 11 1 5.2436 -0.1614 -2.8373 12 6 6.7771 1.0142 -3.7444 13 7 7.7802 1.8406 -3.5429 14 14 6.3140 0.5139 -5.4835 15 1 4.9134 0.9226 -5.7598 16 1 7.2236 1.1811 -6.4493 17 1 6.4366 -0.9594 -5.6239 18 6 3.5799 -1.2020 0.0014 19 6 2.1975 -1.1992 0.0005 20 17 1.3271 -2.7013 0.0011 21 1 -0.3634 0.0004 1.0276 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3634 -0.8903 -0.5135 24 1 1.6551 2.1327 -0.0004 25 1 4.1156 2.1388 0.0108 26 1 6.1565 -0.5800 0.6088 27 1 8.2797 2.1900 -4.2974 28 1 4.1187 -2.1379 0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509359.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:46 Heat of formation + Delta-G solvation = -105.123784 kcal Electronic energy + Delta-G solvation = -16958.567812 eV Core-core repulsion = 13932.356272 eV Total energy + Delta-G solvation = -3026.211540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63800 -37.72985 -37.41154 -36.28226 -36.16978 -35.20772 -32.11239 -31.70483 -28.30501 -26.92887 -23.92718 -22.52464 -21.14382 -19.60982 -18.82604 -18.32701 -17.07966 -16.70227 -16.39036 -15.98025 -15.84201 -15.28143 -15.01781 -14.64621 -14.02821 -13.58158 -13.47636 -13.31868 -13.10730 -13.02960 -12.78801 -12.60576 -12.50345 -12.43292 -12.34070 -11.99034 -11.72358 -11.36357 -11.26086 -10.93174 -9.81643 -9.19503 -8.77333 -7.53032 -0.03450 0.20138 0.40058 1.12267 1.32999 1.34813 1.47996 2.17874 2.53078 2.58294 2.78163 3.54557 3.82886 3.95821 4.12705 4.19140 4.33526 4.51511 4.75182 4.80208 4.88590 4.93291 5.19200 5.27565 5.28607 5.38936 5.51360 5.79494 5.86694 6.23820 6.74064 8.17046 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.006395 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.865343 B = 4377.296550 C = 4837.748354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.084 4.084 4 C -0.163 4.163 5 C 0.155 3.845 6 N -1.061 6.061 7 S 2.714 3.286 8 O -1.026 7.026 9 O -1.028 7.028 10 C -1.035 5.035 11 H 0.114 0.886 12 C 0.075 3.925 13 N -0.886 5.886 14 Si 0.986 3.014 15 H -0.252 1.252 16 H -0.261 1.261 17 H -0.251 1.251 18 C -0.133 4.133 19 C -0.027 4.027 20 Cl -0.056 7.056 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.162 0.838 25 H 0.139 0.861 26 H 0.426 0.574 27 H 0.300 0.700 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.442 -6.218 5.011 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.103 4.103 4 C -0.184 4.184 5 C 0.058 3.942 6 N -0.810 5.810 7 S 2.816 3.184 8 O -1.016 7.016 9 O -1.017 7.017 10 C -1.168 5.168 11 H 0.133 0.867 12 C -0.139 4.139 13 N -0.517 5.517 14 Si 0.804 3.196 15 H -0.176 1.176 16 H -0.185 1.185 17 H -0.175 1.175 18 C -0.155 4.155 19 C -0.055 4.055 20 Cl -0.027 7.027 21 H 0.107 0.893 22 H 0.104 0.896 23 H 0.093 0.907 24 H 0.180 0.820 25 H 0.157 0.843 26 H 0.263 0.737 27 H 0.111 0.889 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.768 -5.420 5.165 15.672 hybrid contribution 0.427 -0.804 -0.786 1.202 sum -13.342 -6.224 4.379 15.359 Atomic orbital electron populations 1.20897 0.87820 1.04264 1.03895 1.20107 0.98420 0.90598 1.00437 1.21146 0.92217 0.98774 0.98135 1.22081 0.96441 0.98253 1.01622 1.17413 0.82327 0.93892 1.00554 1.53356 1.12298 1.61067 1.54330 1.00300 0.70981 0.72331 0.74743 1.93337 1.35251 1.84933 1.88117 1.93291 1.80343 1.40279 1.87818 1.30707 1.28488 1.43010 1.14641 0.86747 1.25931 0.91053 0.90405 1.06485 1.69989 1.17749 1.26964 1.37021 0.85212 0.79844 0.80130 0.74381 1.17576 1.18456 1.17463 1.21097 0.92824 0.98016 1.03562 1.20640 0.91460 0.87591 1.05767 1.98337 1.76080 1.31452 1.96880 0.89301 0.89555 0.90745 0.82000 0.84340 0.73689 0.88941 0.83404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.61 71.23 0.68 -1.26 15 2 C -0.09 -2.36 5.88 -19.82 -0.12 -2.48 15 3 C -0.08 -2.36 9.69 22.25 0.22 -2.14 15 4 C -0.16 -5.92 9.23 22.40 0.21 -5.72 15 5 C 0.15 5.69 6.13 38.21 0.23 5.93 15 6 N -1.06 -42.49 5.77 -51.38 -0.30 -42.79 15 7 S 2.71 143.21 5.05 -56.49 -0.29 142.93 15 8 O -1.03 -60.48 17.58 -128.00 -2.25 -62.73 15 9 O -1.03 -58.06 15.16 -128.00 -1.94 -60.00 15 10 C -1.03 -56.51 9.61 67.73 0.65 -55.86 15 11 H 0.11 5.78 7.81 -2.91 -0.02 5.76 15 12 C 0.08 4.13 5.46 84.65 0.46 4.59 15 13 N -0.89 -51.87 12.84 21.45 0.28 -51.59 15 14 Si 0.99 40.91 29.54 68.60 2.03 42.93 15 15 H -0.25 -9.93 7.11 99.48 0.71 -9.22 15 16 H -0.26 -10.06 7.11 99.48 0.71 -9.36 15 17 H -0.25 -9.83 7.11 99.48 0.71 -9.12 15 18 C -0.13 -4.10 9.75 22.42 0.22 -3.88 15 19 C -0.03 -0.74 6.31 22.30 0.14 -0.60 15 20 Cl -0.06 -1.28 27.28 -2.72 -0.07 -1.35 15 21 H 0.09 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.09 1.24 8.08 -2.39 -0.02 1.22 15 23 H 0.07 1.26 6.89 -2.38 -0.02 1.24 15 24 H 0.16 3.49 8.06 -2.91 -0.02 3.46 15 25 H 0.14 5.74 5.72 -2.91 -0.02 5.72 15 26 H 0.43 14.26 8.96 -96.74 -0.87 13.39 15 27 H 0.30 15.78 8.31 -92.71 -0.77 15.01 15 28 H 0.15 4.05 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -71.15 276.25 0.49 -70.66 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.34 Total: 23.38 kcal Atomic # 6 Polarization: -64.13 SS G_CDS: 2.70 Total: -61.43 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -0.02 Total: -94.38 kcal Atomic # 8 Polarization: -118.54 SS G_CDS: -4.19 Total: -122.73 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: 143.21 SS G_CDS: -0.29 Total: 142.93 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.07 Total: -1.35 kcal Total: -71.15 0.49 -70.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509359.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.466 kcal (2) G-P(sol) polarization free energy of solvation -71.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds