Wall clock time and date at job start Mon Mar 30 2020 01:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99548 * 2 1 4 4 H 1.48505 * 109.47092 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47106 * 299.99905 * 3 2 1 6 6 H 1.48493 * 109.47351 * 60.00075 * 3 2 1 7 7 C 1.37876 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99909 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00092 * 0.02562 * 7 2 1 10 10 O 1.42102 * 106.40640 * 66.45855 * 9 7 2 11 11 O 1.42101 * 106.40221 * 293.54148 * 9 7 2 12 12 N 1.65597 * 107.22133 * 180.02562 * 9 7 2 13 13 C 1.46506 * 119.99791 * 64.99502 * 12 9 7 14 14 C 1.50701 * 109.46793 * 165.00139 * 13 12 9 15 15 C 1.38236 * 120.00408 * 105.00058 * 14 13 12 16 16 C 1.38223 * 120.01605 * 179.97438 * 15 14 13 17 17 C 1.38266 * 120.02048 * 0.04816 * 16 15 14 18 18 C 1.38193 * 120.01539 * 359.97245 * 17 16 15 19 19 C 1.38328 * 120.01085 * 284.72861 * 14 13 12 20 20 Cl 1.73605 * 120.01008 * 359.97431 * 19 14 13 21 21 H 0.96995 * 120.00364 * 0.02562 * 1 2 3 22 22 H 0.96995 * 120.00100 * 245.27417 * 12 9 7 23 23 H 1.08998 * 109.47105 * 285.00387 * 13 12 9 24 24 H 1.09002 * 109.47033 * 45.00797 * 13 12 9 25 25 H 1.08001 * 119.99529 * 0.02562 * 15 14 13 26 26 H 1.07999 * 119.99167 * 180.02562 * 16 15 14 27 27 H 1.08002 * 119.99131 * 179.97438 * 17 16 15 28 28 H 1.08002 * 120.00550 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7200 -0.0019 10 8 0.4520 -2.7945 -1.2519 11 8 0.4511 -2.7961 1.2475 12 7 2.2485 -3.9353 -0.0016 13 6 3.1388 -4.1092 1.1489 14 6 3.7942 -5.4643 1.0766 15 6 5.1199 -5.5717 0.6999 16 6 5.7214 -6.8144 0.6340 17 6 4.9973 -7.9508 0.9438 18 6 3.6718 -7.8447 1.3201 19 6 3.0710 -6.6003 1.3925 20 17 1.4083 -6.4655 1.8731 21 1 -0.4850 0.8400 -0.0004 22 1 2.3206 -4.5296 -0.7648 23 1 3.9048 -3.3338 1.1360 24 1 2.5609 -4.0338 2.0701 25 1 5.6860 -4.6844 0.4579 26 1 6.7573 -6.8979 0.3401 27 1 5.4677 -8.9216 0.8918 28 1 3.1064 -8.7324 1.5625 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509425.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:40 Heat of formation + Delta-G solvation = -106.442946 kcal Electronic energy + Delta-G solvation = -16803.004973 eV Core-core repulsion = 13776.736230 eV Total energy + Delta-G solvation = -3026.268743 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.40411 -37.39300 -37.35310 -36.20108 -36.09587 -35.15505 -31.95335 -31.51275 -28.25786 -26.59919 -23.61124 -22.43427 -21.03215 -19.36923 -18.44082 -17.93547 -17.13334 -16.82289 -16.57288 -15.95856 -15.88031 -15.30135 -14.74821 -14.49250 -14.15271 -13.97712 -13.82527 -13.27634 -13.01881 -12.82656 -12.48970 -12.46681 -12.40276 -12.34100 -12.25761 -12.16234 -11.58553 -11.25915 -10.98601 -10.24105 -9.88522 -9.64418 -8.74599 -7.48004 0.06712 0.28280 0.52151 1.24971 1.34775 1.35627 1.53422 2.22094 2.58859 2.66445 3.10292 3.60600 3.75472 3.85173 4.12052 4.33805 4.43096 4.50853 4.54727 4.68331 4.78622 4.98459 5.07736 5.29269 5.33846 5.46095 5.49826 5.90434 5.91317 6.34879 6.78843 8.22161 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.028757 B = 0.005847 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.436525 B = 4787.669561 C = 5406.955546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.067 3.933 3 Si 0.993 3.007 4 H -0.243 1.243 5 H -0.261 1.261 6 H -0.260 1.260 7 C -1.039 5.039 8 H 0.125 0.875 9 S 2.719 3.281 10 O -1.048 7.048 11 O -1.038 7.038 12 N -1.113 6.113 13 C 0.159 3.841 14 C -0.102 4.102 15 C -0.096 4.096 16 C -0.111 4.111 17 C -0.099 4.099 18 C -0.120 4.120 19 C -0.045 4.045 20 Cl -0.086 7.086 21 H 0.298 0.702 22 H 0.412 0.588 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.151 0.849 26 H 0.163 0.837 27 H 0.165 0.835 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.799 -12.872 2.282 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.146 4.146 3 Si 0.811 3.189 4 H -0.165 1.165 5 H -0.185 1.185 6 H -0.184 1.184 7 C -1.173 5.173 8 H 0.143 0.857 9 S 2.820 3.180 10 O -1.038 7.038 11 O -1.027 7.027 12 N -0.872 5.872 13 C 0.034 3.966 14 C -0.104 4.104 15 C -0.114 4.114 16 C -0.129 4.129 17 C -0.117 4.117 18 C -0.138 4.138 19 C -0.072 4.072 20 Cl -0.058 7.058 21 H 0.108 0.892 22 H 0.246 0.754 23 H 0.107 0.893 24 H 0.086 0.914 25 H 0.169 0.831 26 H 0.181 0.819 27 H 0.183 0.817 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 13.487 -12.811 2.508 18.770 hybrid contribution -0.063 0.896 -0.230 0.927 sum 13.425 -11.916 2.278 18.094 Atomic orbital electron populations 1.70008 1.08910 1.32274 1.41552 1.26079 0.95383 1.05567 0.87523 0.85065 0.79690 0.74891 0.79270 1.16545 1.18536 1.18422 1.30948 1.07382 1.12405 1.66576 0.85734 0.99928 0.72628 0.73956 0.71510 1.93306 1.74919 1.88484 1.47090 1.93307 1.74350 1.88137 1.46933 1.55336 1.55009 1.49780 1.27046 1.20139 0.93093 0.94815 0.88602 1.19839 0.95413 0.93067 1.02103 1.21398 0.92355 1.00169 0.97522 1.21658 1.01721 0.91338 0.98180 1.21566 0.92484 1.00708 0.96922 1.21332 0.96570 0.95256 1.00653 1.21210 0.85804 0.95979 1.04202 1.98411 1.18636 1.98409 1.90295 0.89156 0.75434 0.89295 0.91443 0.83112 0.81920 0.81710 0.83602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.25 13.19 21.45 0.28 -53.97 15 2 C 0.07 3.75 5.46 84.65 0.46 4.21 15 3 Si 0.99 41.18 29.54 68.60 2.03 43.20 15 4 H -0.24 -9.19 7.11 99.48 0.71 -8.49 15 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 15 7 C -1.04 -57.31 9.72 67.73 0.66 -56.65 15 8 H 0.12 6.06 7.81 -2.91 -0.02 6.03 15 9 S 2.72 149.46 5.02 -56.49 -0.28 149.17 15 10 O -1.05 -64.57 18.02 -128.00 -2.31 -66.88 15 11 O -1.04 -63.15 17.49 -128.00 -2.24 -65.39 15 12 N -1.11 -45.38 5.90 -190.78 -1.13 -46.50 15 13 C 0.16 5.50 5.69 85.63 0.49 5.99 15 14 C -0.10 -2.81 5.28 -19.84 -0.10 -2.91 15 15 C -0.10 -1.93 9.67 22.27 0.22 -1.72 15 16 C -0.11 -1.64 10.05 22.27 0.22 -1.41 15 17 C -0.10 -1.44 10.05 22.27 0.22 -1.22 15 18 C -0.12 -2.42 9.83 22.29 0.22 -2.20 15 19 C -0.04 -1.24 6.31 22.32 0.14 -1.09 15 20 Cl -0.09 -2.89 27.56 -2.72 -0.07 -2.96 15 21 H 0.30 16.17 8.31 -92.71 -0.77 15.40 15 22 H 0.41 15.02 8.65 -96.75 -0.84 14.18 15 23 H 0.09 2.71 7.95 -2.39 -0.02 2.69 15 24 H 0.07 2.60 7.18 -2.39 -0.02 2.59 15 25 H 0.15 2.49 8.00 -2.91 -0.02 2.46 15 26 H 0.16 1.29 8.06 -2.91 -0.02 1.26 15 27 H 0.17 1.24 8.06 -2.91 -0.02 1.22 15 28 H 0.15 2.44 8.06 -2.91 -0.02 2.42 15 Total: -1.00 -78.81 282.16 -0.83 -79.64 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.36 Total: 20.67 kcal Atomic # 6 Polarization: -59.52 SS G_CDS: 2.53 Total: -57.00 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -0.84 Total: -100.47 kcal Atomic # 8 Polarization: -127.72 SS G_CDS: -4.54 Total: -132.27 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 16 Polarization: 149.46 SS G_CDS: -0.28 Total: 149.17 kcal Atomic # 17 Polarization: -2.89 SS G_CDS: -0.07 Total: -2.96 kcal Total: -78.81 -0.83 -79.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509425.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.799 kcal (2) G-P(sol) polarization free energy of solvation -78.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds