Wall clock time and date at job start Mon Mar 30 2020 01:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00324 * 2 1 4 4 H 1.48503 * 109.47019 * 239.99831 * 3 2 1 5 5 H 1.48494 * 109.46754 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47004 * 119.99713 * 3 2 1 7 7 C 1.37881 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99872 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47125 * 179.97438 * 9 7 2 11 11 S 1.65597 * 119.99949 * 165.00063 * 10 9 7 12 12 O 1.42098 * 106.40639 * 311.46577 * 11 10 9 13 13 O 1.42105 * 106.39847 * 178.54542 * 11 10 9 14 14 C 1.76199 * 107.21704 * 65.00760 * 11 10 9 15 15 C 1.38270 * 119.99095 * 270.27496 * 14 11 10 16 16 C 1.38215 * 120.02537 * 180.27979 * 15 14 11 17 17 C 1.38238 * 120.01126 * 359.44038 * 16 15 14 18 18 C 1.38325 * 119.98878 * 0.28199 * 17 16 15 19 19 Cl 1.73606 * 120.01335 * 179.97438 * 18 17 16 20 20 C 1.38193 * 119.99770 * 89.99930 * 14 11 10 21 21 H 0.97002 * 119.99695 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46609 * 60.00712 * 9 7 2 23 23 H 1.08994 * 109.47734 * 300.00285 * 9 7 2 24 24 H 0.97006 * 119.99751 * 345.00592 * 10 9 7 25 25 H 1.07997 * 119.98420 * 0.02562 * 15 14 11 26 26 H 1.08002 * 119.99636 * 179.72646 * 16 15 14 27 27 H 1.07999 * 120.00577 * 180.25936 * 17 16 15 28 28 H 1.08003 * 120.00423 * 0.02562 * 20 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6128 0.0015 11 16 1.6882 -5.1421 0.3737 12 8 0.9260 -5.0295 1.5677 13 8 2.8238 -5.9879 0.2533 14 6 0.5638 -5.6359 -0.8898 15 6 -0.7858 -5.3653 -0.7583 16 6 -1.6692 -5.7575 -1.7463 17 6 -1.2024 -6.4103 -2.8718 18 6 0.1483 -6.6762 -3.0066 19 17 0.7352 -7.4966 -4.4195 20 6 1.0315 -6.2885 -2.0145 21 1 -0.4850 0.8401 -0.0004 22 1 0.6240 -2.5574 -0.8881 23 1 0.6246 -2.5564 0.8919 24 1 3.1347 -3.4542 -0.2167 25 1 -1.1502 -4.8510 0.1186 26 1 -2.7239 -5.5498 -1.6411 27 1 -1.8923 -6.7130 -3.6457 28 1 2.0862 -6.4962 -2.1189 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047826536.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:37 Heat of formation + Delta-G solvation = -84.392696 kcal Electronic energy + Delta-G solvation = -16677.617814 eV Core-core repulsion = 13652.305242 eV Total energy + Delta-G solvation = -3025.312573 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.32434 -38.35119 -37.56048 -36.97738 -36.48906 -34.13496 -32.49095 -31.89808 -28.73381 -24.58188 -24.46844 -23.88189 -20.65508 -19.42365 -19.00604 -17.79042 -17.35664 -17.14050 -16.71789 -16.16154 -16.09557 -15.25099 -14.87286 -14.79932 -14.52089 -14.08040 -13.63452 -13.44775 -13.26204 -13.17670 -12.79544 -12.75475 -12.71918 -12.56570 -12.35634 -12.08857 -11.76202 -11.44126 -10.84748 -10.53412 -10.13391 -9.95976 -8.24490 -6.36108 -0.65459 -0.35350 0.00058 0.94930 1.46099 1.47977 1.55696 2.00803 2.31756 2.43379 2.73691 3.10655 3.32008 3.66783 3.86669 3.93789 4.20353 4.32468 4.58231 4.63172 4.81493 4.97439 5.08794 5.27019 5.30838 5.54603 5.74635 5.97234 6.29588 6.77141 7.33324 8.86293 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.005370 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.446268 B = 5213.304677 C = 5624.727693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.258 3.742 10 N -1.102 6.102 11 S 2.708 3.292 12 O -0.989 6.989 13 O -0.984 6.984 14 C -0.669 4.669 15 C -0.030 4.030 16 C -0.121 4.121 17 C -0.050 4.050 18 C -0.067 4.067 19 Cl -0.054 7.054 20 C -0.025 4.025 21 H 0.269 0.731 22 H 0.014 0.986 23 H 0.016 0.984 24 H 0.419 0.581 25 H 0.143 0.857 26 H 0.176 0.824 27 H 0.175 0.825 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 -11.948 -7.608 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.592 4.592 8 H 0.092 0.908 9 C 0.133 3.867 10 N -0.864 5.864 11 S 2.799 3.201 12 O -0.979 6.979 13 O -0.975 6.975 14 C -0.758 4.758 15 C -0.049 4.049 16 C -0.140 4.140 17 C -0.069 4.069 18 C -0.094 4.094 19 Cl -0.025 7.025 20 C -0.045 4.045 21 H 0.078 0.922 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.255 0.745 25 H 0.161 0.839 26 H 0.193 0.807 27 H 0.192 0.808 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.706 -12.433 -6.963 14.505 hybrid contribution 0.372 0.987 -0.672 1.251 sum -2.333 -11.447 -7.636 13.956 Atomic orbital electron populations 1.70031 1.07505 1.28465 1.50203 1.25844 0.95839 1.03024 0.94252 0.85424 0.78199 0.77816 0.79126 1.19070 1.20809 1.19478 1.21596 0.94177 0.90990 1.52389 0.90823 1.18711 0.87984 0.84234 0.95751 1.55271 1.19689 1.23493 1.87909 1.01131 0.72960 0.72108 0.73908 1.93530 1.73223 1.86576 1.44561 1.93517 1.50180 1.66303 1.87484 1.30827 1.11673 1.15704 1.17579 1.21347 0.91279 0.92944 0.99367 1.21678 1.01971 0.97764 0.92547 1.21776 0.93390 0.93541 0.98178 1.21105 0.94955 1.02503 0.90860 1.98375 1.88815 1.77107 1.38219 1.20904 1.01025 0.92409 0.90142 0.92214 0.96774 0.96631 0.74526 0.83881 0.80667 0.80788 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.81 13.29 21.45 0.28 -51.52 15 2 C 0.01 0.57 5.46 84.66 0.46 1.03 15 3 Si 0.97 41.56 29.54 68.60 2.03 43.59 15 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 15 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 15 7 C -0.55 -29.07 9.27 25.60 0.24 -28.83 15 8 H 0.07 3.65 7.65 -2.91 -0.02 3.63 15 9 C 0.26 12.59 5.98 85.63 0.51 13.10 15 10 N -1.10 -43.93 5.99 -190.79 -1.14 -45.07 15 11 S 2.71 99.65 5.74 -56.49 -0.32 99.32 15 12 O -0.99 -42.15 16.76 -128.00 -2.15 -44.30 15 13 O -0.98 -37.29 17.28 -128.00 -2.21 -39.50 15 14 C -0.67 -21.35 5.95 22.27 0.13 -21.22 15 15 C -0.03 -0.88 9.52 22.27 0.21 -0.67 15 16 C -0.12 -2.66 10.05 22.26 0.22 -2.44 15 17 C -0.05 -1.02 9.83 22.29 0.22 -0.80 15 18 C -0.07 -1.62 6.32 22.32 0.14 -1.48 15 19 Cl -0.05 -1.14 28.96 -2.72 -0.08 -1.22 15 20 C -0.02 -0.71 9.31 22.29 0.21 -0.50 15 21 H 0.27 14.21 8.31 -92.71 -0.77 13.44 15 22 H 0.01 0.72 8.14 -2.39 -0.02 0.70 15 23 H 0.02 0.84 7.75 -2.39 -0.02 0.82 15 24 H 0.42 15.10 8.54 -96.74 -0.83 14.28 15 25 H 0.14 4.30 7.62 -2.91 -0.02 4.27 15 26 H 0.18 2.60 8.06 -2.91 -0.02 2.58 15 27 H 0.17 2.25 8.06 -2.91 -0.02 2.23 15 28 H 0.15 4.07 7.62 -2.91 -0.02 4.05 15 Total: -1.00 -65.59 282.29 -0.87 -66.46 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.37 Total: 14.03 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 2.35 Total: -41.79 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -0.86 Total: -96.59 kcal Atomic # 8 Polarization: -79.44 SS G_CDS: -4.36 Total: -83.80 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 99.65 SS G_CDS: -0.32 Total: 99.32 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -65.59 -0.87 -66.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047826536.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.934 kcal (2) G-P(sol) polarization free energy of solvation -65.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds