Wall clock time and date at job start Mon Mar 30 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00360 * 2 1 4 4 H 1.48504 * 109.47339 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46652 * 299.99315 * 3 2 1 6 6 H 1.48499 * 109.47521 * 59.99675 * 3 2 1 7 7 C 1.38816 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99985 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99849 * 0.02562 * 7 2 1 10 10 S 1.65604 * 119.99894 * 179.97438 * 9 7 2 11 11 O 1.42097 * 104.27966 * 308.93141 * 10 9 7 12 12 O 1.42101 * 104.27881 * 181.06666 * 10 9 7 13 13 C 1.81406 * 104.44627 * 65.00192 * 10 9 7 14 14 C 1.50701 * 109.46942 * 179.97438 * 13 10 9 15 15 C 1.38239 * 119.98841 * 270.25142 * 14 13 10 16 16 C 1.38212 * 120.01553 * 180.30134 * 15 14 13 17 17 C 1.38361 * 119.98341 * 359.46433 * 16 15 14 18 18 Cl 1.73597 * 120.00859 * 180.27890 * 17 16 15 19 19 C 1.38346 * 119.97306 * 0.25744 * 17 16 15 20 20 C 1.38210 * 119.98768 * 0.02562 * 19 17 16 21 21 H 0.97005 * 119.99465 * 0.02562 * 1 2 3 22 22 H 0.96998 * 120.00595 * 359.97438 * 9 7 2 23 23 H 1.08991 * 109.47344 * 59.99702 * 13 10 9 24 24 H 1.09000 * 109.46773 * 299.99508 * 13 10 9 25 25 H 1.08004 * 119.99430 * 0.04332 * 15 14 13 26 26 H 1.08002 * 120.01126 * 179.75014 * 16 15 14 27 27 H 1.08002 * 120.00348 * 180.02562 * 19 17 16 28 28 H 1.08002 * 119.99295 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3962 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 16 2.1534 -3.8223 0.0005 11 8 3.0781 -3.6932 -1.0707 12 8 1.1362 -4.8142 -0.0251 13 6 3.0226 -3.8431 1.5927 14 6 3.8209 -5.1156 1.7125 15 6 3.2452 -6.2426 2.2688 16 6 3.9789 -7.4082 2.3847 17 6 5.2862 -7.4501 1.9337 18 17 6.2059 -8.9159 2.0723 19 6 5.8599 -6.3236 1.3718 20 6 5.1272 -5.1569 1.2618 21 1 -0.4849 0.8401 -0.0004 22 1 0.3555 -2.3881 0.0005 23 1 2.2963 -3.7924 2.4038 24 1 3.6934 -2.9860 1.6515 25 1 2.2233 -6.2111 2.6168 26 1 3.5303 -8.2875 2.8231 27 1 6.8803 -6.3558 1.0192 28 1 5.5751 -4.2773 0.8235 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059244695.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:50 Heat of formation + Delta-G solvation = -82.376864 kcal Electronic energy + Delta-G solvation = -16558.928821 eV Core-core repulsion = 13533.703662 eV Total energy + Delta-G solvation = -3025.225160 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.43430 -37.89128 -37.55834 -36.75817 -36.43652 -33.76862 -32.82609 -32.13435 -28.17624 -26.41505 -23.92138 -22.73387 -20.17785 -19.92624 -18.48958 -18.18312 -17.18886 -16.93047 -16.42495 -16.28112 -16.01952 -15.33481 -14.73122 -14.55351 -14.48549 -13.79485 -13.67287 -13.11023 -13.00717 -12.97565 -12.94158 -12.79800 -12.57481 -12.46269 -12.25555 -12.07981 -11.82657 -11.80093 -11.60179 -10.19536 -10.11796 -9.57924 -8.31676 -5.86614 -0.59920 0.16061 0.22187 1.06140 1.49873 1.52284 1.62957 2.17066 2.49967 2.56507 2.97783 3.22340 3.44591 3.55819 3.76758 3.88817 4.16597 4.25774 4.47157 4.54836 4.76287 4.92693 5.09008 5.11540 5.14381 5.39288 5.62034 5.69677 6.75127 6.97983 7.33269 8.86739 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.038602 B = 0.004404 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.177471 B = 6356.501828 C = 6692.551880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.022 4.022 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.311 4.311 8 H 0.114 0.886 9 N -0.981 5.981 10 S 2.584 3.416 11 O -0.995 6.995 12 O -1.012 7.012 13 C -0.581 4.581 14 C -0.093 4.093 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.043 4.043 18 Cl -0.062 7.062 19 C -0.109 4.109 20 C -0.111 4.111 21 H 0.272 0.728 22 H 0.403 0.597 23 H 0.154 0.846 24 H 0.153 0.847 25 H 0.150 0.850 26 H 0.159 0.841 27 H 0.159 0.841 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.410 -10.490 7.425 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.223 4.223 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.446 4.446 8 H 0.132 0.868 9 N -0.731 5.731 10 S 2.680 3.320 11 O -0.986 6.986 12 O -1.002 7.002 13 C -0.708 4.708 14 C -0.095 4.095 15 C -0.130 4.130 16 C -0.127 4.127 17 C -0.070 4.070 18 Cl -0.033 7.033 19 C -0.128 4.128 20 C -0.130 4.130 21 H 0.081 0.919 22 H 0.237 0.763 23 H 0.172 0.828 24 H 0.171 0.829 25 H 0.168 0.832 26 H 0.177 0.823 27 H 0.176 0.824 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.554 -11.193 6.736 16.794 hybrid contribution -0.275 1.109 0.499 1.247 sum 10.279 -10.084 7.235 16.115 Atomic orbital electron populations 1.69814 1.07367 1.28601 1.51210 1.26054 0.96397 1.02549 0.97344 0.85003 0.79088 0.77565 0.77615 1.17598 1.21152 1.20188 1.19635 0.92658 0.83705 1.48607 0.86832 1.51446 1.16718 1.19574 1.85406 1.06325 0.74013 0.72457 0.79190 1.93466 1.66444 1.86369 1.52277 1.93428 1.57492 1.60580 1.88721 1.29679 1.13240 1.02836 1.25055 1.19418 0.95132 0.93818 1.01151 1.21419 1.01218 0.91853 0.98475 1.21314 0.92327 0.99278 0.99827 1.21149 0.93638 0.88874 1.03330 1.98365 1.73520 1.34709 1.96687 1.21304 1.01723 0.90849 0.98888 1.21421 0.93324 0.99430 0.98803 0.91902 0.76251 0.82800 0.82886 0.83195 0.82290 0.82379 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.06 13.06 21.65 0.28 -49.78 15 2 C -0.02 -1.10 5.50 84.86 0.47 -0.64 15 3 Si 0.98 39.48 29.55 68.60 2.03 41.51 15 4 H -0.25 -9.39 7.11 99.48 0.71 -8.68 15 5 H -0.29 -11.62 7.11 99.48 0.71 -10.92 15 6 H -0.28 -10.78 7.11 99.48 0.71 -10.07 15 7 C -0.31 -15.34 9.49 84.04 0.80 -14.55 15 8 H 0.11 5.14 7.82 -2.91 -0.02 5.11 15 9 N -0.98 -46.53 5.65 -54.27 -0.31 -46.84 15 10 S 2.58 106.91 5.41 -56.49 -0.31 106.61 15 11 O -1.00 -46.81 17.76 -127.65 -2.27 -49.08 15 12 O -1.01 -45.79 18.08 -127.65 -2.31 -48.09 15 13 C -0.58 -17.78 6.13 71.24 0.44 -17.34 15 14 C -0.09 -2.68 5.14 -19.86 -0.10 -2.78 15 15 C -0.11 -2.86 9.70 22.26 0.22 -2.64 15 16 C -0.11 -2.46 9.83 22.29 0.22 -2.24 15 17 C -0.04 -0.97 6.32 22.32 0.14 -0.83 15 18 Cl -0.06 -1.21 28.96 -2.72 -0.08 -1.28 15 19 C -0.11 -2.50 9.83 22.29 0.22 -2.28 15 20 C -0.11 -2.91 9.70 22.26 0.22 -2.70 15 21 H 0.27 13.85 8.31 -92.70 -0.77 13.08 15 22 H 0.40 20.18 7.98 -96.75 -0.77 19.41 15 23 H 0.15 4.10 8.09 -2.39 -0.02 4.08 15 24 H 0.15 4.26 8.09 -2.39 -0.02 4.24 15 25 H 0.15 3.43 8.06 -2.91 -0.02 3.41 15 26 H 0.16 2.73 8.06 -2.91 -0.02 2.71 15 27 H 0.16 2.80 8.06 -2.91 -0.02 2.78 15 28 H 0.15 3.55 8.06 -2.91 -0.02 3.52 15 Total: -1.00 -64.36 283.95 0.08 -64.28 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.42 Total: 28.67 kcal Atomic # 6 Polarization: -48.60 SS G_CDS: 2.61 Total: -45.99 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -0.02 Total: -96.62 kcal Atomic # 8 Polarization: -92.60 SS G_CDS: -4.57 Total: -97.18 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Atomic # 16 Polarization: 106.91 SS G_CDS: -0.31 Total: 106.61 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.28 kcal Total: -64.36 0.08 -64.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059244695.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.093 kcal (2) G-P(sol) polarization free energy of solvation -64.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds