Wall clock time and date at job start Mon Mar 30 2020 01:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00794 * 2 1 4 4 C 1.38220 * 120.01498 * 179.97438 * 3 2 1 5 5 S 1.76195 * 119.98635 * 180.02562 * 4 3 2 6 6 O 1.42104 * 106.40022 * 203.54452 * 5 4 3 7 7 O 1.42103 * 106.40378 * 336.45830 * 5 4 3 8 8 N 1.65599 * 107.22001 * 90.00691 * 5 4 3 9 9 C 1.36926 * 120.00269 * 64.99528 * 8 5 4 10 10 H 1.08002 * 120.00041 * 0.02562 * 9 8 5 11 11 C 1.38815 * 120.00041 * 180.02562 * 9 8 5 12 12 N 1.31615 * 120.00062 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99983 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47086 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46982 * 119.99843 * 13 11 9 16 16 H 1.48499 * 109.47194 * 239.99700 * 13 11 9 17 17 C 1.38264 * 120.02583 * 0.02562 * 4 3 2 18 18 C 1.38189 * 120.01199 * 359.97438 * 17 4 3 19 19 C 1.38335 * 120.00426 * 179.97438 * 2 1 3 20 20 Cl 1.73595 * 120.01468 * 359.74809 * 19 2 1 21 21 H 1.08997 * 109.47389 * 270.01704 * 1 2 3 22 22 H 1.09002 * 109.47291 * 30.02179 * 1 2 3 23 23 H 1.09002 * 109.47234 * 150.01696 * 1 2 3 24 24 H 1.08002 * 119.99411 * 359.95836 * 3 2 1 25 25 H 0.97003 * 119.99188 * 245.00056 * 8 5 4 26 26 H 0.97000 * 120.00463 * 180.02562 * 12 11 9 27 27 H 1.07997 * 119.99869 * 179.97438 * 17 4 3 28 28 H 1.08001 * 120.00973 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 0.0005 5 16 4.4609 2.7234 0.0012 6 8 5.7441 2.4466 -0.5429 7 8 3.5791 3.6956 -0.5434 8 7 4.7054 3.1476 1.5832 9 6 5.4981 2.3713 2.3856 10 1 5.9643 1.4825 1.9866 11 6 5.7026 2.7266 3.7118 12 7 5.1350 3.8100 4.1978 13 14 6.7835 1.6671 4.8066 14 1 7.2990 0.5137 4.0261 15 1 7.9239 2.4756 5.3077 16 1 5.9865 1.1695 5.9565 17 6 4.2725 0.0002 0.0005 18 6 3.5825 -1.1971 0.0005 19 6 2.1987 -1.1980 0.0005 20 17 1.3313 -2.7016 0.0078 21 1 -0.3634 0.0003 1.0276 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3634 -0.8901 -0.5136 24 1 1.6583 2.1324 -0.0007 25 1 4.2870 3.9461 1.9413 26 1 5.2782 4.0586 5.1244 27 1 5.3525 0.0008 0.0005 28 1 4.1231 -2.1321 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071559459.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:06 Heat of formation + Delta-G solvation = -64.919857 kcal Electronic energy + Delta-G solvation = -16920.841055 eV Core-core repulsion = 13896.372888 eV Total energy + Delta-G solvation = -3024.468167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.18581 -36.46091 -36.15903 -34.78087 -34.70199 -32.74693 -31.04445 -30.69071 -26.89102 -24.60133 -22.91732 -21.69606 -18.43807 -18.22005 -17.14549 -16.59019 -15.84181 -15.76118 -14.62316 -14.36212 -14.19194 -14.06161 -13.53302 -13.07231 -12.53580 -12.44438 -12.17040 -12.03762 -11.53589 -11.49435 -11.35309 -11.16796 -11.10360 -10.96780 -10.68940 -10.56602 -10.40919 -10.09888 -9.95355 -8.84469 -8.61156 -8.35117 -6.55714 -3.97853 0.95743 1.43828 1.50650 2.09754 3.13291 3.19494 3.22552 3.55885 4.01408 4.41531 4.73087 4.77049 4.83510 5.05116 5.26685 5.37983 5.47059 5.62425 5.72292 5.77461 5.96257 6.13988 6.22685 6.35765 6.48229 6.94560 6.94997 7.39991 8.57810 8.70813 9.14020 10.59874 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.006759 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.424659 B = 4141.779303 C = 4879.297617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.105 4.105 3 C -0.015 4.015 4 C -0.650 4.650 5 S 2.611 3.389 6 O -0.969 6.969 7 O -1.000 7.000 8 N -0.945 5.945 9 C -0.274 4.274 10 H 0.105 0.895 11 C 0.032 3.968 12 N -0.874 5.874 13 Si 0.923 3.077 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.280 1.280 17 C -0.015 4.015 18 C -0.133 4.133 19 C -0.002 4.002 20 Cl -0.075 7.075 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.142 0.858 25 H 0.411 0.589 26 H 0.275 0.725 27 H 0.145 0.855 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.238 -8.767 -4.317 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.107 4.107 3 C -0.034 4.034 4 C -0.729 4.729 5 S 2.700 3.300 6 O -0.959 6.959 7 O -0.989 6.989 8 N -0.696 5.696 9 C -0.414 4.414 10 H 0.123 0.877 11 C -0.176 4.176 12 N -0.515 5.515 13 Si 0.750 3.250 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.205 1.205 17 C -0.035 4.035 18 C -0.152 4.152 19 C -0.029 4.029 20 Cl -0.046 7.046 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.160 0.840 25 H 0.247 0.753 26 H 0.085 0.915 27 H 0.163 0.837 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.083 -8.559 -5.137 11.689 hybrid contribution -0.203 -1.034 1.211 1.605 sum -6.286 -9.593 -3.926 12.122 Atomic orbital electron populations 1.20845 0.90238 1.03288 1.02932 1.19840 0.96744 0.91615 1.02456 1.20739 0.92489 0.97558 0.92648 1.32291 1.06253 1.23611 1.10764 1.06600 0.74063 0.73888 0.75405 1.93476 1.38729 1.85518 1.78214 1.93419 1.66636 1.59714 1.79144 1.51810 1.54871 1.31296 1.31665 1.19394 1.20313 1.08719 0.93017 0.87702 1.25272 0.98437 0.96906 0.97002 1.69694 1.42468 1.23162 1.16167 0.85908 0.79470 0.79790 0.79878 1.18963 1.20354 1.20537 1.20900 1.00504 0.90298 0.91757 1.21130 0.91880 0.99413 1.02804 1.20969 0.92514 0.86241 1.03155 1.98339 1.77105 1.32455 1.96739 0.90688 0.90934 0.91081 0.83993 0.75288 0.91479 0.83696 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.61 36.00 0.35 -1.05 15 2 C -0.11 -1.62 5.88 -104.59 -0.62 -2.23 15 3 C -0.02 -0.26 9.18 -39.59 -0.36 -0.62 15 4 C -0.65 -12.31 5.89 -39.58 -0.23 -12.55 15 5 S 2.61 56.06 5.70 -107.50 -0.61 55.45 15 6 O -0.97 -22.80 16.99 -57.17 -0.97 -23.77 15 7 O -1.00 -22.77 17.28 -57.17 -0.99 -23.76 15 8 N -0.94 -22.00 5.75 31.50 0.18 -21.82 15 9 C -0.27 -6.68 9.63 -15.06 -0.15 -6.82 15 10 H 0.11 2.41 7.82 -52.49 -0.41 2.00 15 11 C 0.03 0.79 5.50 -17.43 -0.10 0.69 15 12 N -0.87 -22.50 13.06 55.49 0.72 -21.77 15 13 Si 0.92 19.10 29.55 -169.99 -5.02 14.07 15 14 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 15 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 16 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 17 C -0.02 -0.27 9.52 -39.59 -0.38 -0.64 15 18 C -0.13 -2.04 9.83 -39.55 -0.39 -2.43 15 19 C 0.00 -0.03 6.31 -39.49 -0.25 -0.28 15 20 Cl -0.08 -0.96 27.30 -51.86 -1.42 -2.37 15 21 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.07 0.78 8.09 -51.93 -0.42 0.36 15 23 H 0.07 0.78 6.91 -51.93 -0.36 0.42 15 24 H 0.14 2.30 7.62 -52.49 -0.40 1.90 15 25 H 0.41 9.73 8.02 -34.46 -0.28 9.45 15 26 H 0.28 6.65 8.31 -40.82 -0.34 6.31 15 27 H 0.15 2.40 7.62 -52.49 -0.40 2.00 15 28 H 0.13 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 278.89 15.07 4.20 4.20 Total: -1.00 -28.92 278.89 -8.27 -37.19 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -2.25 Total: 8.52 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -2.12 Total: -25.93 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.91 Total: -43.59 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -1.96 Total: -47.53 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 16 Polarization: 56.06 SS G_CDS: -0.61 Total: 55.45 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.42 Total: -2.37 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.92 -8.27 -37.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071559459.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.733 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds