Wall clock time and date at job start Mon Mar 30 2020 01:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00794 * 2 1 4 4 C 1.38220 * 120.01498 * 179.97438 * 3 2 1 5 5 S 1.76195 * 119.98635 * 180.02562 * 4 3 2 6 6 O 1.42104 * 106.40022 * 203.54452 * 5 4 3 7 7 O 1.42103 * 106.40378 * 336.45830 * 5 4 3 8 8 N 1.65599 * 107.22001 * 90.00691 * 5 4 3 9 9 C 1.36926 * 120.00269 * 64.99528 * 8 5 4 10 10 H 1.08002 * 120.00041 * 0.02562 * 9 8 5 11 11 C 1.38815 * 120.00041 * 180.02562 * 9 8 5 12 12 N 1.31615 * 120.00062 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99983 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47086 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46982 * 119.99843 * 13 11 9 16 16 H 1.48499 * 109.47194 * 239.99700 * 13 11 9 17 17 C 1.38264 * 120.02583 * 0.02562 * 4 3 2 18 18 C 1.38189 * 120.01199 * 359.97438 * 17 4 3 19 19 C 1.38335 * 120.00426 * 179.97438 * 2 1 3 20 20 Cl 1.73595 * 120.01468 * 359.74809 * 19 2 1 21 21 H 1.08997 * 109.47389 * 270.01704 * 1 2 3 22 22 H 1.09002 * 109.47291 * 30.02179 * 1 2 3 23 23 H 1.09002 * 109.47234 * 150.01696 * 1 2 3 24 24 H 1.08002 * 119.99411 * 359.95836 * 3 2 1 25 25 H 0.97003 * 119.99188 * 245.00056 * 8 5 4 26 26 H 0.97000 * 120.00463 * 180.02562 * 12 11 9 27 27 H 1.07997 * 119.99869 * 179.97438 * 17 4 3 28 28 H 1.08001 * 120.00973 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 0.0005 5 16 4.4609 2.7234 0.0012 6 8 5.7441 2.4466 -0.5429 7 8 3.5791 3.6956 -0.5434 8 7 4.7054 3.1476 1.5832 9 6 5.4981 2.3713 2.3856 10 1 5.9643 1.4825 1.9866 11 6 5.7026 2.7266 3.7118 12 7 5.1350 3.8100 4.1978 13 14 6.7835 1.6671 4.8066 14 1 7.2990 0.5137 4.0261 15 1 7.9239 2.4756 5.3077 16 1 5.9865 1.1695 5.9565 17 6 4.2725 0.0002 0.0005 18 6 3.5825 -1.1971 0.0005 19 6 2.1987 -1.1980 0.0005 20 17 1.3313 -2.7016 0.0078 21 1 -0.3634 0.0003 1.0276 22 1 -0.3634 0.8898 -0.5142 23 1 -0.3634 -0.8901 -0.5136 24 1 1.6583 2.1324 -0.0007 25 1 4.2870 3.9461 1.9413 26 1 5.2782 4.0586 5.1244 27 1 5.3525 0.0008 0.0005 28 1 4.1231 -2.1321 0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071559459.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:05 Heat of formation + Delta-G solvation = -84.295972 kcal Electronic energy + Delta-G solvation = -16921.681266 eV Core-core repulsion = 13896.372888 eV Total energy + Delta-G solvation = -3025.308378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47580 -38.07787 -37.60376 -36.71206 -36.45449 -33.94977 -32.81995 -32.05485 -28.03006 -26.41480 -24.31474 -23.00006 -20.20581 -19.99396 -18.65578 -18.25135 -17.35728 -17.16918 -16.36218 -16.04021 -15.47907 -15.26035 -15.22204 -14.32079 -13.91315 -13.76334 -13.45446 -13.29202 -13.11891 -13.02347 -13.00494 -12.84777 -12.75566 -12.61040 -12.26510 -12.11004 -11.85697 -11.83039 -11.57078 -10.22126 -10.09795 -9.86179 -8.30321 -5.87226 -0.46860 -0.19986 0.15165 0.91762 1.49248 1.51211 1.62050 2.15915 2.36759 2.68951 2.95841 3.22926 3.46138 3.68672 3.78436 4.14916 4.21837 4.39840 4.56486 4.72978 4.75937 4.88230 5.05250 5.12057 5.13416 5.17999 5.62820 5.65073 6.76179 6.97367 7.33825 8.88306 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.018220 B = 0.006759 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.424659 B = 4141.779303 C = 4879.297617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.104 4.104 3 C -0.027 4.027 4 C -0.666 4.666 5 S 2.673 3.327 6 O -0.992 6.992 7 O -1.008 7.008 8 N -0.974 5.974 9 C -0.311 4.311 10 H 0.110 0.890 11 C -0.017 4.017 12 N -0.928 5.928 13 Si 0.979 3.021 14 H -0.254 1.254 15 H -0.282 1.282 16 H -0.279 1.279 17 C -0.027 4.027 18 C -0.128 4.128 19 C -0.001 4.001 20 Cl -0.045 7.045 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.149 0.851 25 H 0.407 0.593 26 H 0.271 0.729 27 H 0.149 0.851 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 -11.364 -5.523 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.105 4.105 3 C -0.046 4.046 4 C -0.752 4.752 5 S 2.765 3.235 6 O -0.982 6.982 7 O -0.998 6.998 8 N -0.727 5.727 9 C -0.445 4.445 10 H 0.128 0.872 11 C -0.218 4.218 12 N -0.571 5.571 13 Si 0.803 3.197 14 H -0.178 1.178 15 H -0.208 1.208 16 H -0.205 1.205 17 C -0.047 4.047 18 C -0.147 4.147 19 C -0.028 4.028 20 Cl -0.016 7.016 21 H 0.104 0.896 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.167 0.833 25 H 0.242 0.758 26 H 0.081 0.919 27 H 0.167 0.833 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.348 -11.126 -6.253 14.727 hybrid contribution -0.022 -0.433 1.167 1.245 sum -7.369 -11.559 -5.086 14.621 Atomic orbital electron populations 1.20963 0.87668 1.04721 1.04063 1.20171 0.98608 0.90858 1.00880 1.20934 0.91798 0.99091 0.92817 1.31408 1.06952 1.21616 1.15243 1.02807 0.73375 0.73893 0.73408 1.93468 1.40365 1.86124 1.78279 1.93435 1.67136 1.60448 1.78766 1.51300 1.58017 1.33308 1.30050 1.19522 1.23241 1.08433 0.93284 0.87240 1.25956 0.99632 0.97981 0.98247 1.69791 1.45566 1.25506 1.16230 0.85064 0.77776 0.78545 0.78281 1.17769 1.20751 1.20491 1.21054 1.00963 0.90644 0.92033 1.21413 0.92273 0.99689 1.01332 1.21204 0.92825 0.87505 1.01258 1.98358 1.76418 1.30430 1.96419 0.89567 0.89592 0.89689 0.83292 0.75821 0.91931 0.83327 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.61 71.23 0.68 -1.69 15 2 C -0.10 -2.85 5.88 -19.84 -0.12 -2.97 15 3 C -0.03 -0.88 9.18 22.26 0.20 -0.67 15 4 C -0.67 -24.33 5.89 22.27 0.13 -24.20 15 5 S 2.67 114.29 5.70 -56.49 -0.32 113.96 15 6 O -0.99 -46.41 16.99 -128.00 -2.17 -48.58 15 7 O -1.01 -45.28 17.28 -128.00 -2.21 -47.49 15 8 N -0.97 -46.64 5.75 -54.27 -0.31 -46.95 15 9 C -0.31 -15.58 9.63 84.04 0.81 -14.77 15 10 H 0.11 5.15 7.82 -2.91 -0.02 5.12 15 11 C -0.02 -0.85 5.50 84.86 0.47 -0.38 15 12 N -0.93 -50.25 13.06 21.65 0.28 -49.97 15 13 Si 0.98 40.20 29.55 68.60 2.03 42.22 15 14 H -0.25 -9.74 7.11 99.48 0.71 -9.03 15 15 H -0.28 -11.54 7.11 99.48 0.71 -10.84 15 16 H -0.28 -11.25 7.11 99.48 0.71 -10.55 15 17 C -0.03 -0.91 9.52 22.26 0.21 -0.69 15 18 C -0.13 -3.50 9.83 22.29 0.22 -3.28 15 19 C 0.00 -0.02 6.31 22.33 0.14 0.12 15 20 Cl -0.05 -0.97 27.30 -2.72 -0.07 -1.04 15 21 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.09 1.53 8.09 -2.39 -0.02 1.51 15 23 H 0.08 1.49 6.91 -2.39 -0.02 1.47 15 24 H 0.15 4.56 7.62 -2.91 -0.02 4.53 15 25 H 0.41 20.14 8.02 -96.75 -0.78 19.36 15 26 H 0.27 13.89 8.31 -92.71 -0.77 13.12 15 27 H 0.15 4.72 7.62 -2.91 -0.02 4.69 15 28 H 0.17 3.46 8.06 -2.91 -0.02 3.43 15 Total: -1.00 -62.36 278.89 0.40 -61.97 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.43 Total: 24.42 kcal Atomic # 6 Polarization: -51.29 SS G_CDS: 2.75 Total: -48.54 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -0.03 Total: -96.92 kcal Atomic # 8 Polarization: -91.69 SS G_CDS: -4.39 Total: -96.08 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.22 kcal Atomic # 16 Polarization: 114.29 SS G_CDS: -0.32 Total: 113.96 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.07 Total: -1.04 kcal Total: -62.36 0.40 -61.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071559459.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.330 kcal (2) G-P(sol) polarization free energy of solvation -62.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds