Wall clock time and date at job start Mon Mar 30 2020 01:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.53001 * 109.47003 * 120.00059 * 2 1 3 5 5 N 1.46899 * 109.46793 * 298.59214 * 4 2 1 6 6 C 1.46904 * 110.99657 * 183.02119 * 5 4 2 7 7 C 1.53241 * 109.33872 * 187.25725 * 6 5 4 8 8 N 1.47081 * 108.51868 * 306.16664 * 7 6 5 9 9 C 1.36936 * 120.88450 * 231.18620 * 8 7 6 10 10 H 1.08006 * 119.99545 * 31.40875 * 9 8 7 11 11 C 1.38808 * 120.00273 * 211.13613 * 9 8 7 12 12 N 1.31615 * 119.99959 * 13.01196 * 11 9 8 13 13 Si 1.86797 * 120.00013 * 193.00794 * 11 9 8 14 14 H 1.48510 * 109.47140 * 90.00032 * 13 11 9 15 15 H 1.48503 * 109.47522 * 210.00059 * 13 11 9 16 16 H 1.48504 * 109.47509 * 330.00620 * 13 11 9 17 17 C 1.47084 * 118.23616 * 51.46201 * 8 7 6 18 18 C 1.46895 * 111.00461 * 307.32302 * 5 4 2 19 19 C 1.50705 * 109.47284 * 239.99867 * 2 1 3 20 20 C 1.38231 * 119.99690 * 299.73162 * 19 2 1 21 21 C 1.38239 * 119.99422 * 179.81034 * 20 19 2 22 22 C 1.38228 * 120.00221 * 0.39225 * 21 20 19 23 23 C 1.38234 * 119.99980 * 359.85520 * 22 21 20 24 24 C 1.38233 * 119.99541 * 119.99756 * 19 2 1 25 25 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47021 * 300.00425 * 1 2 3 27 27 H 1.09006 * 109.46658 * 59.99786 * 1 2 3 28 28 H 1.08997 * 109.46993 * 178.59829 * 4 2 1 29 29 H 1.08998 * 109.47286 * 58.59395 * 4 2 1 30 30 H 1.08993 * 109.49472 * 67.29794 * 6 5 4 31 31 H 1.09004 * 109.49119 * 307.21212 * 6 5 4 32 32 H 1.08998 * 109.63038 * 186.45864 * 7 6 5 33 33 H 1.08999 * 109.79336 * 65.97389 * 7 6 5 34 34 H 0.97004 * 120.00202 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.62781 * 68.25147 * 17 8 7 36 36 H 1.09005 * 109.62561 * 188.83140 * 17 8 7 37 37 H 1.09009 * 109.49138 * 292.70895 * 18 5 4 38 38 H 1.08995 * 109.49622 * 52.75615 * 18 5 4 39 39 H 1.07999 * 120.00237 * 359.97438 * 20 19 2 40 40 H 1.07997 * 119.99550 * 180.23240 * 21 20 19 41 41 H 1.08006 * 120.00367 * 179.83994 * 22 21 20 42 42 H 1.08010 * 120.00167 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.00957 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5782 -0.0094 2.4484 6 6 2.1090 -0.6332 3.6679 7 6 1.4640 0.0209 4.8945 8 7 1.6590 1.4760 4.8047 9 6 2.1824 2.1812 5.8554 10 1 2.8969 1.7138 6.5169 11 6 1.7989 3.4983 6.0670 12 7 0.7573 3.9908 5.4308 13 14 2.7610 4.5719 7.2549 14 1 3.8499 5.2674 6.5228 15 1 1.8517 5.5772 7.8615 16 1 3.3466 3.7247 8.3248 17 6 1.2712 2.1545 3.5587 18 6 1.9292 1.4155 2.3826 19 6 2.0324 -0.7105 -1.2305 20 6 1.7030 -2.0355 -1.4463 21 6 2.1606 -2.6860 -2.5770 22 6 2.9542 -2.0138 -3.4876 23 6 3.2878 -0.6903 -3.2691 24 6 2.8271 -0.0386 -2.1403 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.1296 -0.7431 1.2368 29 1 1.6562 -1.7414 1.2620 30 1 3.1892 -0.4937 3.7072 31 1 1.8793 -1.6987 3.6610 32 1 1.9361 -0.3565 5.8015 33 1 0.3979 -0.2050 4.9155 34 1 0.4890 4.9112 5.5789 35 1 0.1870 2.1295 3.4503 36 1 1.6160 3.1883 3.5822 37 1 3.0121 1.5264 2.4398 38 1 1.5698 1.8357 1.4433 39 1 1.0860 -2.5617 -0.7330 40 1 1.9002 -3.7201 -2.7476 41 1 3.3139 -2.5228 -4.3697 42 1 3.9082 -0.1652 -3.9804 43 1 3.0876 0.9955 -1.9698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072517584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:49 Heat of formation + Delta-G solvation = 49.719018 kcal Electronic energy + Delta-G solvation = -21286.922226 eV Core-core repulsion = 18332.323098 eV Total energy + Delta-G solvation = -2954.599128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.68806 -38.10372 -35.39838 -33.34595 -31.09930 -30.97912 -29.90977 -29.19178 -27.12463 -24.89078 -23.43193 -22.69544 -22.45809 -21.90126 -19.71354 -18.92784 -16.97963 -16.68024 -15.68478 -15.19275 -14.88451 -14.47918 -14.33819 -14.11862 -13.69988 -13.42510 -13.38020 -13.24760 -12.99180 -12.69801 -12.43741 -12.10205 -11.79329 -11.42695 -11.29621 -11.08460 -10.95841 -10.77759 -10.71814 -10.53520 -10.32115 -10.24144 -9.99861 -9.68813 -9.51974 -8.98978 -8.72640 -8.48213 -7.73458 -6.56662 -5.75497 -3.21790 1.30343 1.33034 3.38608 3.45224 3.46611 3.72083 4.37418 4.51796 4.73809 4.85485 4.93402 5.06710 5.11389 5.34095 5.42699 5.43848 5.48452 5.50502 5.56340 5.82731 5.84534 5.95579 5.97809 6.00370 6.07572 6.16257 6.20216 6.25063 6.29104 6.38467 6.40771 6.43314 6.55829 6.59649 6.70926 6.75071 6.94381 6.99469 7.29064 7.66703 7.69988 7.76392 7.85703 8.49465 9.25130 9.86939 10.48210 11.32984 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.035223 B = 0.003664 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.745781 B = 7639.842796 C = 7871.942899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.056 4.056 3 H 0.082 0.918 4 C 0.065 3.935 5 N -0.529 5.529 6 C 0.045 3.955 7 C 0.149 3.851 8 N -0.595 5.595 9 C -0.254 4.254 10 H 0.063 0.937 11 C 0.004 3.996 12 N -0.903 5.903 13 Si 0.903 3.097 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.279 1.279 17 C 0.182 3.818 18 C 0.029 3.971 19 C -0.067 4.067 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.131 4.131 23 C -0.120 4.120 24 C -0.119 4.119 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.024 0.976 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.025 0.975 34 H 0.254 0.746 35 H 0.027 0.973 36 H 0.082 0.918 37 H 0.022 0.978 38 H 0.065 0.935 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -10.813 -15.867 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.075 4.075 3 H 0.100 0.900 4 C -0.063 4.063 5 N -0.253 5.253 6 C -0.084 4.084 7 C 0.023 3.977 8 N -0.319 5.319 9 C -0.383 4.383 10 H 0.081 0.919 11 C -0.194 4.194 12 N -0.547 5.547 13 Si 0.733 3.267 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.056 3.944 18 C -0.100 4.100 19 C -0.067 4.067 20 C -0.132 4.132 21 C -0.139 4.139 22 C -0.149 4.149 23 C -0.138 4.138 24 C -0.137 4.137 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.911 -10.670 -15.791 19.154 hybrid contribution 1.433 0.625 0.461 1.630 sum 3.344 -10.046 -15.330 18.631 Atomic orbital electron populations 1.21716 0.93300 1.01830 1.02143 1.20314 0.97160 0.99194 0.90818 0.90010 1.22116 0.96806 0.97632 0.89752 1.62004 1.59346 1.03127 1.00856 1.22598 0.96880 0.97304 0.91651 1.20972 0.97106 0.85944 0.93701 1.44087 1.73839 1.01428 1.12518 1.19170 1.17878 0.94945 1.06345 0.91928 1.25145 0.96337 0.99142 0.98816 1.69996 1.24732 1.14914 1.45093 0.86282 0.79210 0.80398 0.80794 1.21489 1.21687 1.20447 1.20901 0.96090 0.95675 0.81770 1.23085 0.98006 0.87946 1.00997 1.19999 0.96503 0.94186 0.96030 1.21052 1.00186 0.94413 0.97554 1.21129 0.98264 0.99765 0.94711 1.21096 0.99316 0.94963 0.99544 1.21123 1.00133 0.94979 0.97595 1.21129 0.98016 1.00025 0.94490 0.93015 0.90465 0.93582 0.95780 0.91343 0.95595 0.92196 0.92776 0.95703 0.93629 0.95493 0.89934 0.95950 0.91677 0.86009 0.86329 0.86475 0.86327 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.81 37.16 0.33 -1.40 16 2 C -0.06 -0.74 2.08 -91.77 -0.19 -0.93 16 3 H 0.08 1.14 5.81 -51.93 -0.30 0.83 16 4 C 0.07 0.96 4.32 -3.82 -0.02 0.94 16 5 N -0.53 -9.40 4.03 -234.03 -0.94 -10.34 16 6 C 0.05 0.83 5.62 -3.70 -0.02 0.81 16 7 C 0.15 3.25 6.69 -3.60 -0.02 3.22 16 8 N -0.60 -15.32 3.01 -171.73 -0.52 -15.84 16 9 C -0.25 -7.08 9.61 -15.06 -0.14 -7.22 16 10 H 0.06 1.72 7.86 -52.48 -0.41 1.31 16 11 C 0.00 0.12 5.00 -17.43 -0.09 0.04 16 12 N -0.90 -26.41 11.23 55.49 0.62 -25.79 16 13 Si 0.90 21.86 29.57 -169.99 -5.03 16.83 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.18 4.42 5.39 -3.36 -0.02 4.40 16 18 C 0.03 0.56 5.18 -3.47 -0.02 0.54 16 19 C -0.07 -0.81 4.78 -104.62 -0.50 -1.31 16 20 C -0.11 -1.28 8.73 -39.58 -0.35 -1.62 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 22 C -0.13 -1.27 10.05 -39.59 -0.40 -1.67 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.12 -1.36 9.67 -39.58 -0.38 -1.74 16 25 H 0.05 0.63 7.41 -51.93 -0.38 0.24 16 26 H 0.08 1.16 7.57 -51.93 -0.39 0.77 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.94 7.42 -51.93 -0.39 0.55 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.05 1.13 7.95 -51.93 -0.41 0.72 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 2.22 6.33 -51.93 -0.33 1.89 16 37 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 38 H 0.07 1.15 5.70 -51.93 -0.30 0.85 16 39 H 0.12 1.26 7.12 -52.49 -0.37 0.88 16 40 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 42 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 43 H 0.12 1.27 7.95 -52.49 -0.42 0.85 16 LS Contribution 335.74 15.07 5.06 5.06 Total: -1.00 -29.84 335.74 -10.49 -40.33 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.07 Total: -1.08 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.61 Total: -9.17 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.84 Total: -51.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.84 -10.49 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.045 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds