Wall clock time and date at job start Mon Mar 30 2020 01:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.53001 * 109.47003 * 120.00059 * 2 1 3 5 5 N 1.46899 * 109.46793 * 298.59214 * 4 2 1 6 6 C 1.46904 * 110.99657 * 183.02119 * 5 4 2 7 7 C 1.53241 * 109.33872 * 187.25725 * 6 5 4 8 8 N 1.47081 * 108.51868 * 306.16664 * 7 6 5 9 9 C 1.36936 * 120.88450 * 231.18620 * 8 7 6 10 10 H 1.08006 * 119.99545 * 31.40875 * 9 8 7 11 11 C 1.38808 * 120.00273 * 211.13613 * 9 8 7 12 12 N 1.31615 * 119.99959 * 13.01196 * 11 9 8 13 13 Si 1.86797 * 120.00013 * 193.00794 * 11 9 8 14 14 H 1.48510 * 109.47140 * 90.00032 * 13 11 9 15 15 H 1.48503 * 109.47522 * 210.00059 * 13 11 9 16 16 H 1.48504 * 109.47509 * 330.00620 * 13 11 9 17 17 C 1.47084 * 118.23616 * 51.46201 * 8 7 6 18 18 C 1.46895 * 111.00461 * 307.32302 * 5 4 2 19 19 C 1.50705 * 109.47284 * 239.99867 * 2 1 3 20 20 C 1.38231 * 119.99690 * 299.73162 * 19 2 1 21 21 C 1.38239 * 119.99422 * 179.81034 * 20 19 2 22 22 C 1.38228 * 120.00221 * 0.39225 * 21 20 19 23 23 C 1.38234 * 119.99980 * 359.85520 * 22 21 20 24 24 C 1.38233 * 119.99541 * 119.99756 * 19 2 1 25 25 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47021 * 300.00425 * 1 2 3 27 27 H 1.09006 * 109.46658 * 59.99786 * 1 2 3 28 28 H 1.08997 * 109.46993 * 178.59829 * 4 2 1 29 29 H 1.08998 * 109.47286 * 58.59395 * 4 2 1 30 30 H 1.08993 * 109.49472 * 67.29794 * 6 5 4 31 31 H 1.09004 * 109.49119 * 307.21212 * 6 5 4 32 32 H 1.08998 * 109.63038 * 186.45864 * 7 6 5 33 33 H 1.08999 * 109.79336 * 65.97389 * 7 6 5 34 34 H 0.97004 * 120.00202 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.62781 * 68.25147 * 17 8 7 36 36 H 1.09005 * 109.62561 * 188.83140 * 17 8 7 37 37 H 1.09009 * 109.49138 * 292.70895 * 18 5 4 38 38 H 1.08995 * 109.49622 * 52.75615 * 18 5 4 39 39 H 1.07999 * 120.00237 * 359.97438 * 20 19 2 40 40 H 1.07997 * 119.99550 * 180.23240 * 21 20 19 41 41 H 1.08006 * 120.00367 * 179.83994 * 22 21 20 42 42 H 1.08010 * 120.00167 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.00957 * 359.97438 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5782 -0.0094 2.4484 6 6 2.1090 -0.6332 3.6679 7 6 1.4640 0.0209 4.8945 8 7 1.6590 1.4760 4.8047 9 6 2.1824 2.1812 5.8554 10 1 2.8969 1.7138 6.5169 11 6 1.7989 3.4983 6.0670 12 7 0.7573 3.9908 5.4308 13 14 2.7610 4.5719 7.2549 14 1 3.8499 5.2674 6.5228 15 1 1.8517 5.5772 7.8615 16 1 3.3466 3.7247 8.3248 17 6 1.2712 2.1545 3.5587 18 6 1.9292 1.4155 2.3826 19 6 2.0324 -0.7105 -1.2305 20 6 1.7030 -2.0355 -1.4463 21 6 2.1606 -2.6860 -2.5770 22 6 2.9542 -2.0138 -3.4876 23 6 3.2878 -0.6903 -3.2691 24 6 2.8271 -0.0386 -2.1403 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.1296 -0.7431 1.2368 29 1 1.6562 -1.7414 1.2620 30 1 3.1892 -0.4937 3.7072 31 1 1.8793 -1.6987 3.6610 32 1 1.9361 -0.3565 5.8015 33 1 0.3979 -0.2050 4.9155 34 1 0.4890 4.9112 5.5789 35 1 0.1870 2.1295 3.4503 36 1 1.6160 3.1883 3.5822 37 1 3.0121 1.5264 2.4398 38 1 1.5698 1.8357 1.4433 39 1 1.0860 -2.5617 -0.7330 40 1 1.9002 -3.7201 -2.7476 41 1 3.3139 -2.5228 -4.3697 42 1 3.9082 -0.1652 -3.9804 43 1 3.0876 0.9955 -1.9698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072517584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:48 Heat of formation + Delta-G solvation = 33.845418 kcal Electronic energy + Delta-G solvation = -21287.610557 eV Core-core repulsion = 18332.323098 eV Total energy + Delta-G solvation = -2955.287459 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.65861 -39.50341 -36.88845 -34.87155 -32.91769 -31.77044 -31.62602 -30.21490 -28.73355 -26.43159 -24.81799 -24.28613 -23.56319 -23.05196 -21.03981 -20.42775 -18.67951 -17.81777 -17.04124 -16.47781 -16.18910 -15.98532 -15.68257 -15.32784 -15.23221 -15.01445 -14.91506 -14.39422 -14.12883 -13.93581 -13.73602 -13.23636 -13.16350 -12.93246 -12.81344 -12.64319 -12.38826 -12.19714 -12.11270 -12.03890 -11.93173 -11.72604 -11.59544 -11.42290 -11.13822 -10.60091 -9.76973 -9.55931 -9.22447 -8.62195 -7.87758 -5.38289 0.50045 0.54991 1.45940 1.46700 1.56180 2.49608 2.89265 3.03886 3.28182 3.68521 3.78063 3.91630 4.15985 4.21708 4.23417 4.32098 4.34486 4.37283 4.48793 4.53668 4.61053 4.67689 4.68899 4.71616 4.83217 4.89652 4.91595 5.03863 5.08242 5.16101 5.21270 5.22653 5.27542 5.35819 5.46865 5.60993 5.65004 5.67337 5.68058 5.81196 6.16354 6.21890 6.28844 6.39553 7.13892 7.82907 8.39543 9.18490 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.035223 B = 0.003664 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.745781 B = 7639.842796 C = 7871.942899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.049 4.049 3 H 0.070 0.930 4 C 0.072 3.928 5 N -0.533 5.533 6 C 0.055 3.945 7 C 0.146 3.854 8 N -0.615 5.615 9 C -0.268 4.268 10 H 0.064 0.936 11 C -0.048 4.048 12 N -0.934 5.934 13 Si 0.970 3.030 14 H -0.285 1.285 15 H -0.293 1.293 16 H -0.268 1.268 17 C 0.190 3.810 18 C 0.048 3.952 19 C -0.082 4.082 20 C -0.123 4.123 21 C -0.124 4.124 22 C -0.133 4.133 23 C -0.126 4.126 24 C -0.135 4.135 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.021 0.979 29 H 0.086 0.914 30 H 0.019 0.981 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.017 0.983 34 H 0.251 0.749 35 H 0.000 1.000 36 H 0.050 0.950 37 H 0.012 0.988 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.468 -12.582 -17.240 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.068 4.068 3 H 0.088 0.912 4 C -0.056 4.056 5 N -0.258 5.258 6 C -0.074 4.074 7 C 0.020 3.980 8 N -0.339 5.339 9 C -0.399 4.399 10 H 0.082 0.918 11 C -0.244 4.244 12 N -0.580 5.580 13 Si 0.798 3.202 14 H -0.211 1.211 15 H -0.219 1.219 16 H -0.193 1.193 17 C 0.065 3.935 18 C -0.081 4.081 19 C -0.082 4.082 20 C -0.141 4.141 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.144 4.144 24 C -0.153 4.153 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.104 0.896 30 H 0.038 0.962 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.102 0.898 39 H 0.147 0.853 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.894 -12.475 -17.175 21.423 hybrid contribution 1.107 1.098 0.834 1.768 sum 4.001 -11.376 -16.340 20.308 Atomic orbital electron populations 1.21640 0.93260 1.02223 1.01245 1.20182 0.97081 0.98557 0.90951 0.91181 1.22148 0.96624 0.98163 0.88662 1.61953 1.59619 1.02145 1.02074 1.22457 0.95977 0.98692 0.90298 1.21111 0.96993 0.84020 0.95885 1.44380 1.73961 1.03059 1.12542 1.19499 1.17927 0.95610 1.06816 0.91834 1.25926 0.97300 1.00372 1.00757 1.70160 1.26257 1.14927 1.46645 0.85231 0.77680 0.78433 0.78848 1.21136 1.21913 1.19303 1.20645 0.94646 0.94819 0.83438 1.22730 0.96675 0.89145 0.99555 1.19903 0.97679 0.94812 0.95818 1.21203 1.00492 0.94085 0.98356 1.21446 0.97754 1.00874 0.94147 1.21462 0.98584 0.94812 1.00186 1.21407 1.00083 0.95494 0.97432 1.21287 0.98443 1.00395 0.95170 0.91959 0.92880 0.92885 0.96114 0.89584 0.96238 0.88810 0.92323 0.96537 0.94014 0.98144 0.93165 0.96951 0.89796 0.85330 0.84087 0.84023 0.84451 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.81 71.98 0.63 -2.53 16 2 C -0.05 -1.24 2.08 -11.54 -0.02 -1.26 16 3 H 0.07 1.91 5.81 -2.39 -0.01 1.90 16 4 C 0.07 1.97 4.32 86.30 0.37 2.35 16 5 N -0.53 -18.50 4.03 -894.33 -3.60 -22.10 16 6 C 0.05 1.95 5.62 86.38 0.49 2.43 16 7 C 0.15 6.32 6.69 86.35 0.58 6.90 16 8 N -0.62 -32.35 3.01 -697.23 -2.10 -34.45 16 9 C -0.27 -15.23 9.61 84.03 0.81 -14.42 16 10 H 0.06 3.52 7.86 -2.91 -0.02 3.49 16 11 C -0.05 -2.73 5.00 84.86 0.42 -2.30 16 12 N -0.93 -56.35 11.23 21.65 0.24 -56.10 16 13 Si 0.97 45.56 29.57 68.60 2.03 47.59 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 15 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 C 0.19 9.61 5.39 86.50 0.47 10.07 16 18 C 0.05 1.91 5.18 86.54 0.45 2.36 16 19 C -0.08 -1.85 4.78 -19.87 -0.09 -1.94 16 20 C -0.12 -2.46 8.73 22.27 0.19 -2.27 16 21 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 22 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 23 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 24 C -0.13 -2.90 9.67 22.27 0.22 -2.69 16 25 H 0.06 1.41 7.41 -2.39 -0.02 1.39 16 26 H 0.05 1.58 7.57 -2.38 -0.02 1.57 16 27 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 2.11 7.42 -2.39 -0.02 2.09 16 30 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 2.71 8.11 -2.38 -0.02 2.69 16 32 H 0.06 2.44 7.95 -2.39 -0.02 2.42 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.00 0.02 8.14 -2.39 -0.02 0.01 16 36 H 0.05 2.83 6.33 -2.38 -0.02 2.81 16 37 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.08 2.99 5.70 -2.39 -0.01 2.98 16 39 H 0.13 2.31 7.12 -2.91 -0.02 2.29 16 40 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.12 2.47 7.95 -2.91 -0.02 2.44 16 Total: -1.00 -65.07 335.74 2.71 -62.36 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.96 Total: 11.89 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.18 Total: -9.19 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -5.46 Total: -112.66 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -65.07 2.71 -62.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072517584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.205 kcal (2) G-P(sol) polarization free energy of solvation -65.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds