Wall clock time and date at job start Mon Mar 30 2020 01:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 110.99829 * 2 1 4 4 C 1.39677 * 111.00142 * 236.05085 * 2 1 3 5 5 C 1.38928 * 120.07471 * 64.17628 * 4 2 1 6 6 C 1.38086 * 119.92446 * 179.97438 * 5 4 2 7 7 C 1.38308 * 120.07481 * 0.02562 * 6 5 4 8 8 C 1.38269 * 120.14582 * 359.97438 * 7 6 5 9 9 C 1.38123 * 120.07871 * 359.73846 * 8 7 6 10 10 C 1.50692 * 120.03857 * 180.27790 * 9 8 7 11 11 N 1.46903 * 109.47149 * 106.68178 * 10 9 8 12 12 C 1.46906 * 110.99939 * 163.41556 * 11 10 9 13 13 C 1.50698 * 109.46917 * 195.83305 * 12 11 10 14 14 H 1.08003 * 119.99941 * 5.18377 * 13 12 11 15 15 C 1.37874 * 119.99759 * 185.19130 * 13 12 11 16 16 N 1.31516 * 120.00480 * 359.97438 * 15 13 12 17 17 Si 1.86811 * 119.99691 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46986 * 89.99799 * 17 15 13 19 19 H 1.48498 * 109.46638 * 209.99530 * 17 15 13 20 20 H 1.48493 * 109.46950 * 329.99729 * 17 15 13 21 21 C 1.46902 * 110.99625 * 287.36518 * 11 10 9 22 22 C 1.52997 * 117.49285 * 141.92371 * 21 11 10 23 23 C 1.52997 * 117.49651 * 73.26905 * 21 11 10 24 24 H 1.09001 * 109.46776 * 179.36327 * 1 2 3 25 25 H 1.08999 * 109.47531 * 59.36194 * 1 2 3 26 26 H 1.08998 * 109.46944 * 299.35308 * 1 2 3 27 27 H 1.09002 * 109.46787 * 60.00197 * 3 2 1 28 28 H 1.09001 * 109.47397 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47032 * 300.00557 * 3 2 1 30 30 H 1.08001 * 120.03981 * 359.95418 * 5 4 2 31 31 H 1.07996 * 119.96437 * 179.97438 * 6 5 4 32 32 H 1.07993 * 119.92650 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.95474 * 179.97438 * 8 7 6 34 34 H 1.09005 * 109.47386 * 226.67905 * 10 9 8 35 35 H 1.09003 * 109.47488 * 346.67362 * 10 9 8 36 36 H 1.09003 * 109.46771 * 315.83258 * 12 11 10 37 37 H 1.09000 * 109.47105 * 75.82958 * 12 11 10 38 38 H 0.96997 * 120.00364 * 179.97438 * 16 15 13 39 39 H 1.08996 * 115.55014 * 287.59710 * 21 11 10 40 40 H 1.09002 * 117.50436 * 0.02562 * 22 21 11 41 41 H 1.09005 * 117.49528 * 145.02209 * 22 21 11 42 42 H 1.08997 * 117.50182 * 214.97709 * 23 21 11 43 43 H 1.09003 * 117.50124 * 359.97425 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9696 -0.7282 -1.0817 5 6 1.7302 -0.2983 -2.3809 6 6 2.2270 -1.0203 -3.4480 7 6 2.9617 -2.1706 -3.2245 8 6 3.2018 -2.6012 -1.9327 9 6 2.7128 -1.8805 -0.8606 10 6 2.9803 -2.3472 0.5470 11 7 3.9792 -1.4701 1.1722 12 6 3.9824 -1.6327 2.6323 13 6 4.7120 -0.4758 3.2649 14 1 5.0582 0.3440 2.6529 15 6 4.9376 -0.4639 4.6250 16 7 4.5158 -1.4620 5.3704 17 14 5.8427 0.9699 5.4091 18 1 4.8643 2.0114 5.8132 19 1 6.5815 0.4937 6.6060 20 1 6.8016 1.5441 4.4315 21 6 5.3159 -1.7119 0.6127 22 6 6.2225 -0.4981 0.3995 23 6 5.5914 -1.2032 -0.8036 24 1 -0.3633 -1.0276 -0.0114 25 1 -0.3634 0.5237 -0.8842 26 1 -0.3633 0.5037 0.8957 27 1 1.6459 1.8948 0.8900 28 1 3.0850 1.3425 -0.0005 29 1 1.6458 1.8949 -0.8899 30 1 1.1559 0.5994 -2.5562 31 1 2.0409 -0.6869 -4.4582 32 1 3.3488 -2.7336 -4.0608 33 1 3.7756 -3.5001 -1.7618 34 1 2.0556 -2.3131 1.1231 35 1 3.3573 -3.3698 0.5254 36 1 2.9556 -1.6580 2.9972 37 1 4.4837 -2.5648 2.8930 38 1 4.6749 -1.4538 6.3272 39 1 5.7888 -2.6470 0.9125 40 1 5.8274 0.4798 0.6748 41 1 7.2922 -0.6348 0.5587 42 1 6.2460 -1.8033 -1.4356 43 1 4.7808 -0.6894 -1.3205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072581050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:02 Heat of formation + Delta-G solvation = 76.107314 kcal Electronic energy + Delta-G solvation = -22195.013335 eV Core-core repulsion = 19241.558490 eV Total energy + Delta-G solvation = -2953.454846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.86791 -37.34949 -36.13552 -33.70571 -32.55689 -30.83063 -29.60829 -27.25886 -26.94296 -24.64330 -24.03153 -22.08256 -21.64072 -21.23081 -20.52937 -19.25887 -16.80821 -16.23004 -15.51143 -15.25982 -14.86130 -14.70482 -14.40318 -14.20902 -13.95061 -13.48500 -13.36921 -12.94545 -12.36177 -12.21686 -12.05239 -11.96760 -11.75239 -11.43716 -11.27993 -11.21044 -10.93584 -10.82010 -10.73839 -10.65798 -10.45196 -9.93843 -9.52887 -9.12811 -9.10871 -8.54142 -8.31162 -8.22905 -8.02721 -7.09457 -5.90232 -3.88904 1.55496 1.63307 3.37977 3.43913 3.47646 3.95189 4.22254 4.52500 4.65037 4.97061 5.09921 5.12507 5.25000 5.43151 5.45316 5.50530 5.57293 5.65363 5.72825 5.79138 5.81533 5.88336 5.95553 6.03538 6.05855 6.16134 6.25392 6.28311 6.39054 6.45616 6.51041 6.62557 6.70282 6.74119 6.88407 6.95446 7.13844 7.27583 7.39283 7.49401 7.79579 7.97153 8.25458 8.38259 8.70474 9.19150 9.73844 11.20684 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020626 B = 0.006020 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.181868 B = 4650.039872 C = 5150.675074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.489 5.489 3 C 0.042 3.958 4 C 0.111 3.889 5 C -0.157 4.157 6 C -0.123 4.123 7 C -0.129 4.129 8 C -0.107 4.107 9 C -0.036 4.036 10 C 0.107 3.893 11 N -0.489 5.489 12 C 0.200 3.800 13 C -0.487 4.487 14 H 0.064 0.936 15 C 0.052 3.948 16 N -0.904 5.904 17 Si 0.892 3.108 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.275 1.275 21 C 0.036 3.964 22 C -0.152 4.152 23 C -0.186 4.186 24 H 0.064 0.936 25 H 0.020 0.980 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.015 0.985 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.023 0.977 36 H 0.028 0.972 37 H -0.009 1.009 38 H 0.258 0.742 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 0.475 -15.761 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.209 5.209 3 C -0.104 4.104 4 C 0.017 3.983 5 C -0.177 4.177 6 C -0.141 4.141 7 C -0.147 4.147 8 C -0.126 4.126 9 C -0.037 4.037 10 C -0.021 4.021 11 N -0.214 5.214 12 C 0.076 3.924 13 C -0.526 4.526 14 H 0.082 0.918 15 C -0.148 4.148 16 N -0.545 5.545 17 Si 0.721 3.279 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.200 1.200 21 C -0.073 4.073 22 C -0.190 4.190 23 C -0.223 4.223 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.033 0.967 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.100 0.900 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.009 0.991 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.974 0.688 -15.180 15.989 hybrid contribution 0.480 0.346 0.015 0.592 sum -4.494 1.034 -15.165 15.850 Atomic orbital electron populations 1.22413 0.87027 1.01829 1.00348 1.59400 1.06762 1.14283 1.40482 1.22310 1.01763 0.86854 0.99504 1.18612 0.97231 0.94320 0.88173 1.21590 1.02090 1.00476 0.93536 1.20857 0.99277 0.95888 0.98126 1.21014 0.99903 0.97097 0.96676 1.20997 0.99567 0.99967 0.92041 1.19925 0.94582 0.93416 0.95800 1.20778 0.97340 0.93078 0.90934 1.61863 1.00976 1.50950 1.07570 1.19693 0.97026 0.96015 0.79703 1.21159 1.34612 1.05094 0.91727 0.91785 1.24959 0.96396 0.96045 0.97409 1.69959 1.47704 1.31242 1.05551 0.86586 0.79827 0.82742 0.78750 1.20881 1.21584 1.19978 1.22083 0.92675 0.96173 0.96370 1.22799 0.97202 0.98232 1.00727 1.23074 1.03169 1.04974 0.91109 0.91707 0.96130 0.91041 0.91177 0.90456 0.96695 0.87016 0.86917 0.86682 0.86364 0.90011 0.95888 0.95407 0.99104 0.93225 0.91453 0.88546 0.90180 0.90443 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.33 60.06 0.56 0.97 16 2 N -0.49 -7.80 4.26 -186.85 -0.80 -8.59 16 3 C 0.04 0.65 9.28 60.07 0.56 1.20 16 4 C 0.11 1.72 4.63 -83.79 -0.39 1.33 16 5 C -0.16 -2.11 8.66 -39.38 -0.34 -2.45 16 6 C -0.12 -1.49 10.04 -39.61 -0.40 -1.89 16 7 C -0.13 -1.57 10.04 -39.54 -0.40 -1.97 16 8 C -0.11 -1.48 7.80 -39.61 -0.31 -1.79 16 9 C -0.04 -0.57 3.46 -104.43 -0.36 -0.93 16 10 C 0.11 1.98 4.67 -4.98 -0.02 1.96 16 11 N -0.49 -10.37 4.53 -229.52 -1.04 -11.41 16 12 C 0.20 5.18 4.74 -4.97 -0.02 5.16 16 13 C -0.49 -13.52 8.65 -34.44 -0.30 -13.82 16 14 H 0.06 1.77 6.43 -52.48 -0.34 1.43 16 15 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 16 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.04 0.72 4.53 -67.71 -0.31 0.41 16 22 C -0.15 -2.85 9.61 -26.70 -0.26 -3.11 16 23 C -0.19 -3.10 8.37 -26.70 -0.22 -3.32 16 24 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 25 H 0.02 0.24 7.51 -51.93 -0.39 -0.15 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 29 H 0.01 0.19 7.25 -51.93 -0.38 -0.18 16 30 H 0.11 1.37 7.09 -52.49 -0.37 1.00 16 31 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.53 7.99 -52.49 -0.42 1.11 16 34 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 35 H 0.02 0.42 7.84 -51.93 -0.41 0.01 16 36 H 0.03 0.77 7.72 -51.93 -0.40 0.37 16 37 H -0.01 -0.25 8.05 -51.93 -0.42 -0.67 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.10 1.96 7.35 -51.93 -0.38 1.57 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.61 6.29 -51.93 -0.33 1.28 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -29.61 344.70 -10.39 -40.00 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.16 Total: 1.13 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.31 Total: -16.88 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -1.10 Total: -46.33 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.61 -10.39 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072581050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.107 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds