Wall clock time and date at job start Mon Mar 30 2020 01:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 110.99829 * 2 1 4 4 C 1.39677 * 111.00142 * 236.05085 * 2 1 3 5 5 C 1.38928 * 120.07471 * 64.17628 * 4 2 1 6 6 C 1.38086 * 119.92446 * 179.97438 * 5 4 2 7 7 C 1.38308 * 120.07481 * 0.02562 * 6 5 4 8 8 C 1.38269 * 120.14582 * 359.97438 * 7 6 5 9 9 C 1.38123 * 120.07871 * 359.73846 * 8 7 6 10 10 C 1.50692 * 120.03857 * 180.27790 * 9 8 7 11 11 N 1.46903 * 109.47149 * 106.68178 * 10 9 8 12 12 C 1.46906 * 110.99939 * 163.41556 * 11 10 9 13 13 C 1.50698 * 109.46917 * 195.83305 * 12 11 10 14 14 H 1.08003 * 119.99941 * 5.18377 * 13 12 11 15 15 C 1.37874 * 119.99759 * 185.19130 * 13 12 11 16 16 N 1.31516 * 120.00480 * 359.97438 * 15 13 12 17 17 Si 1.86811 * 119.99691 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46986 * 89.99799 * 17 15 13 19 19 H 1.48498 * 109.46638 * 209.99530 * 17 15 13 20 20 H 1.48493 * 109.46950 * 329.99729 * 17 15 13 21 21 C 1.46902 * 110.99625 * 287.36518 * 11 10 9 22 22 C 1.52997 * 117.49285 * 141.92371 * 21 11 10 23 23 C 1.52997 * 117.49651 * 73.26905 * 21 11 10 24 24 H 1.09001 * 109.46776 * 179.36327 * 1 2 3 25 25 H 1.08999 * 109.47531 * 59.36194 * 1 2 3 26 26 H 1.08998 * 109.46944 * 299.35308 * 1 2 3 27 27 H 1.09002 * 109.46787 * 60.00197 * 3 2 1 28 28 H 1.09001 * 109.47397 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47032 * 300.00557 * 3 2 1 30 30 H 1.08001 * 120.03981 * 359.95418 * 5 4 2 31 31 H 1.07996 * 119.96437 * 179.97438 * 6 5 4 32 32 H 1.07993 * 119.92650 * 179.97438 * 7 6 5 33 33 H 1.07999 * 119.95474 * 179.97438 * 8 7 6 34 34 H 1.09005 * 109.47386 * 226.67905 * 10 9 8 35 35 H 1.09003 * 109.47488 * 346.67362 * 10 9 8 36 36 H 1.09003 * 109.46771 * 315.83258 * 12 11 10 37 37 H 1.09000 * 109.47105 * 75.82958 * 12 11 10 38 38 H 0.96997 * 120.00364 * 179.97438 * 16 15 13 39 39 H 1.08996 * 115.55014 * 287.59710 * 21 11 10 40 40 H 1.09002 * 117.50436 * 0.02562 * 22 21 11 41 41 H 1.09005 * 117.49528 * 145.02209 * 22 21 11 42 42 H 1.08997 * 117.50182 * 214.97709 * 23 21 11 43 43 H 1.09003 * 117.50124 * 359.97425 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9696 -0.7282 -1.0817 5 6 1.7302 -0.2983 -2.3809 6 6 2.2270 -1.0203 -3.4480 7 6 2.9617 -2.1706 -3.2245 8 6 3.2018 -2.6012 -1.9327 9 6 2.7128 -1.8805 -0.8606 10 6 2.9803 -2.3472 0.5470 11 7 3.9792 -1.4701 1.1722 12 6 3.9824 -1.6327 2.6323 13 6 4.7120 -0.4758 3.2649 14 1 5.0582 0.3440 2.6529 15 6 4.9376 -0.4639 4.6250 16 7 4.5158 -1.4620 5.3704 17 14 5.8427 0.9699 5.4091 18 1 4.8643 2.0114 5.8132 19 1 6.5815 0.4937 6.6060 20 1 6.8016 1.5441 4.4315 21 6 5.3159 -1.7119 0.6127 22 6 6.2225 -0.4981 0.3995 23 6 5.5914 -1.2032 -0.8036 24 1 -0.3633 -1.0276 -0.0114 25 1 -0.3634 0.5237 -0.8842 26 1 -0.3633 0.5037 0.8957 27 1 1.6459 1.8948 0.8900 28 1 3.0850 1.3425 -0.0005 29 1 1.6458 1.8949 -0.8899 30 1 1.1559 0.5994 -2.5562 31 1 2.0409 -0.6869 -4.4582 32 1 3.3488 -2.7336 -4.0608 33 1 3.7756 -3.5001 -1.7618 34 1 2.0556 -2.3131 1.1231 35 1 3.3573 -3.3698 0.5254 36 1 2.9556 -1.6580 2.9972 37 1 4.4837 -2.5648 2.8930 38 1 4.6749 -1.4538 6.3272 39 1 5.7888 -2.6470 0.9125 40 1 5.8274 0.4798 0.6748 41 1 7.2922 -0.6348 0.5587 42 1 6.2460 -1.8033 -1.4356 43 1 4.7808 -0.6894 -1.3205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072581050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:02 Heat of formation + Delta-G solvation = 59.058270 kcal Electronic energy + Delta-G solvation = -22195.752637 eV Core-core repulsion = 19241.558490 eV Total energy + Delta-G solvation = -2954.194148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02024 -38.88725 -37.24273 -35.43566 -34.44521 -32.27178 -30.68577 -28.82476 -28.38973 -26.14777 -25.19430 -24.05810 -23.05571 -22.43587 -21.75364 -20.79199 -18.52870 -17.67405 -16.91860 -16.65428 -16.35078 -16.06578 -15.87859 -15.70059 -15.21238 -15.01854 -14.54028 -14.41620 -13.85455 -13.77172 -13.35937 -13.16152 -13.09541 -13.00049 -12.75726 -12.73611 -12.52512 -12.50403 -12.23564 -12.09015 -11.89637 -11.73991 -11.23169 -11.09173 -10.67592 -10.51296 -9.59576 -9.36308 -9.15070 -8.85605 -8.10470 -6.17682 0.51941 0.56383 1.41893 1.43039 1.53932 2.44928 2.87384 3.11450 3.14080 3.22077 3.40568 4.01534 4.06559 4.21313 4.27584 4.30826 4.33485 4.43703 4.44849 4.53639 4.61449 4.68779 4.75868 4.76959 4.82258 4.88710 4.96027 4.98044 5.02460 5.10416 5.17716 5.23423 5.29173 5.39548 5.47079 5.60626 5.68656 5.76563 5.80046 6.09024 6.15956 6.18459 6.54405 6.67606 6.79046 6.99281 7.50487 9.00241 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020626 B = 0.006020 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.181868 B = 4650.039872 C = 5150.675074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.519 5.519 3 C 0.050 3.950 4 C 0.098 3.902 5 C -0.159 4.159 6 C -0.113 4.113 7 C -0.122 4.122 8 C -0.109 4.109 9 C -0.058 4.058 10 C 0.112 3.888 11 N -0.486 5.486 12 C 0.219 3.781 13 C -0.494 4.494 14 H 0.064 0.936 15 C -0.002 4.002 16 N -0.941 5.941 17 Si 0.961 3.039 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.265 1.265 21 C 0.009 3.991 22 C -0.160 4.160 23 C -0.140 4.140 24 H 0.061 0.939 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.125 0.875 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.125 0.875 34 H 0.059 0.941 35 H 0.021 0.979 36 H -0.004 1.004 37 H -0.043 1.043 38 H 0.260 0.740 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 1.537 -18.762 19.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.239 5.239 3 C -0.097 4.097 4 C 0.004 3.996 5 C -0.180 4.180 6 C -0.132 4.132 7 C -0.140 4.140 8 C -0.128 4.128 9 C -0.060 4.060 10 C -0.015 4.015 11 N -0.209 5.209 12 C 0.093 3.907 13 C -0.532 4.532 14 H 0.082 0.918 15 C -0.199 4.199 16 N -0.583 5.583 17 Si 0.787 3.213 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.101 4.101 22 C -0.198 4.198 23 C -0.177 4.177 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.143 0.857 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.143 0.857 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.015 0.985 37 H -0.026 1.026 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.479 1.754 -18.210 18.835 hybrid contribution 0.271 -0.037 0.871 0.913 sum -4.208 1.717 -17.340 17.925 Atomic orbital electron populations 1.22385 0.85689 1.01900 1.01203 1.59315 1.08229 1.14608 1.41791 1.22175 1.00055 0.87075 1.00350 1.18705 0.97659 0.94273 0.88979 1.21730 1.02252 1.01124 0.92844 1.21255 0.97638 0.95135 0.99179 1.21341 0.99004 0.97078 0.96567 1.21106 0.99450 0.99928 0.92327 1.19711 0.96956 0.94963 0.94349 1.20679 0.95474 0.92692 0.92689 1.61772 1.02614 1.51796 1.04719 1.19286 0.94312 0.94003 0.83124 1.21401 1.34406 1.05331 0.92105 0.91818 1.25835 0.97241 0.98749 0.98025 1.70100 1.49009 1.33314 1.05853 0.85499 0.78698 0.79313 0.77802 1.20162 1.21197 1.18890 1.22109 0.92041 0.96310 0.99596 1.22813 0.97691 0.96792 1.02459 1.23019 1.02273 1.02905 0.89494 0.92057 0.94166 0.91136 0.91757 0.93019 0.94333 0.85708 0.83768 0.83554 0.85742 0.92284 0.96086 0.98547 1.02577 0.93126 0.92632 0.90417 0.88855 0.87432 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.33 127.69 1.19 2.10 16 2 N -0.52 -16.62 4.26 -745.07 -3.17 -19.80 16 3 C 0.05 1.53 9.28 127.69 1.19 2.71 16 4 C 0.10 2.94 4.63 38.21 0.18 3.11 16 5 C -0.16 -3.83 8.66 22.40 0.19 -3.64 16 6 C -0.11 -2.26 10.04 22.25 0.22 -2.04 16 7 C -0.12 -2.47 10.04 22.29 0.22 -2.25 16 8 C -0.11 -2.79 7.80 22.25 0.17 -2.61 16 9 C -0.06 -1.84 3.46 -19.74 -0.07 -1.91 16 10 C 0.11 4.37 4.67 85.55 0.40 4.77 16 11 N -0.49 -21.49 4.53 -880.05 -3.99 -25.48 16 12 C 0.22 12.05 4.74 85.56 0.41 12.46 16 13 C -0.49 -28.41 8.65 25.60 0.22 -28.18 16 14 H 0.06 3.61 6.43 -2.91 -0.02 3.59 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 16 N -0.94 -58.24 13.29 21.45 0.28 -57.96 16 17 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 21 C 0.01 0.35 4.53 44.91 0.20 0.55 16 22 C -0.16 -5.91 9.61 30.62 0.29 -5.62 16 23 C -0.14 -4.38 8.37 30.62 0.26 -4.13 16 24 H 0.06 1.61 8.12 -2.39 -0.02 1.59 16 25 H 0.04 0.88 7.51 -2.39 -0.02 0.86 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 1.81 8.12 -2.39 -0.02 1.79 16 29 H 0.04 0.96 7.25 -2.39 -0.02 0.94 16 30 H 0.13 2.64 7.09 -2.91 -0.02 2.62 16 31 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.12 2.97 7.99 -2.91 -0.02 2.94 16 34 H 0.06 2.50 7.58 -2.38 -0.02 2.48 16 35 H 0.02 0.80 7.84 -2.39 -0.02 0.78 16 36 H 0.00 -0.21 7.72 -2.39 -0.02 -0.23 16 37 H -0.04 -2.64 8.05 -2.39 -0.02 -2.66 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.08 3.17 7.35 -2.39 -0.02 3.15 16 41 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 42 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.09 2.96 6.29 -2.39 -0.02 2.95 16 Total: -1.00 -66.33 344.70 1.65 -64.68 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.96 Total: 15.29 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 5.54 Total: -24.33 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -6.88 Total: -103.24 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -66.33 1.65 -64.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072581050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.740 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds