Wall clock time and date at job start Mon Mar 30 2020 01:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36931 * 119.99962 * 2 1 4 4 H 1.08006 * 119.99884 * 162.57047 * 3 2 1 5 5 C 1.38810 * 120.00184 * 342.57982 * 3 2 1 6 6 N 1.31612 * 119.99867 * 344.95408 * 5 3 2 7 7 Si 1.86803 * 120.00201 * 164.96364 * 5 3 2 8 8 H 1.48497 * 109.47116 * 59.99605 * 7 5 3 9 9 H 1.48499 * 109.47095 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46940 * 299.99400 * 7 5 3 11 11 C 1.46501 * 120.00009 * 179.72787 * 2 1 3 12 12 C 1.53006 * 109.47186 * 270.27677 * 11 2 1 13 13 H 1.08998 * 110.64123 * 56.69309 * 12 11 2 14 14 C 1.54595 * 110.71892 * 293.54591 * 12 11 2 15 15 C 1.54000 * 105.13836 * 219.68193 * 14 12 11 16 16 N 1.47901 * 107.05539 * 358.77995 * 15 14 12 17 17 C 1.46897 * 111.00094 * 145.84645 * 16 15 14 18 18 C 1.50706 * 109.46906 * 290.11968 * 17 16 15 19 19 C 1.38232 * 120.00297 * 269.73157 * 18 17 16 20 20 C 1.38234 * 120.00133 * 179.76593 * 19 18 17 21 21 C 1.38236 * 119.99728 * 0.50142 * 20 19 18 22 22 C 1.38235 * 120.00244 * 359.75096 * 21 20 19 23 23 C 1.38236 * 119.99700 * 89.99893 * 18 17 16 24 24 C 1.48535 * 105.82443 * 25.32878 * 16 15 14 25 25 H 1.09001 * 109.47489 * 84.93758 * 1 2 3 26 26 H 1.09001 * 109.47571 * 204.93438 * 1 2 3 27 27 H 1.08999 * 109.47389 * 324.93389 * 1 2 3 28 28 H 0.97005 * 120.00248 * 180.02562 * 6 5 3 29 29 H 1.09004 * 109.47158 * 30.26981 * 11 2 1 30 30 H 1.08998 * 109.47422 * 150.27467 * 11 2 1 31 31 H 1.08997 * 110.31069 * 338.59959 * 14 12 11 32 32 H 1.09003 * 110.31207 * 100.67365 * 14 12 11 33 33 H 1.09000 * 109.91469 * 118.12948 * 15 14 12 34 34 H 1.08996 * 109.91764 * 239.42222 * 15 14 12 35 35 H 1.08995 * 109.47538 * 50.11901 * 17 16 15 36 36 H 1.08998 * 109.47335 * 170.12538 * 17 16 15 37 37 H 1.08003 * 119.99528 * 359.97438 * 19 18 17 38 38 H 1.08004 * 119.99935 * 180.22995 * 20 19 18 39 39 H 1.08006 * 119.99802 * 179.72181 * 21 20 19 40 40 H 1.07992 * 119.99906 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.00323 * 0.02562 * 23 18 17 42 42 H 1.08999 * 110.66542 * 202.36559 * 24 16 15 43 43 H 1.08993 * 110.66826 * 79.22612 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1925 1.2073 0.2802 5 6 1.5033 2.3604 -0.3599 6 7 0.3423 2.3100 -0.9776 7 14 2.2816 4.0127 0.0323 8 1 3.6024 4.1096 -0.6395 9 1 1.3987 5.1035 -0.4532 10 1 2.4627 4.1385 1.5008 11 6 2.1975 -1.2687 0.0060 12 6 2.4464 -1.7071 1.4507 13 1 1.5059 -1.7856 1.9959 14 6 3.4103 -0.7288 2.1606 15 6 4.3301 -1.6202 3.0157 16 7 3.8853 -3.0170 2.8194 17 6 5.0249 -3.9430 2.8604 18 6 5.8748 -3.7484 1.6312 19 6 5.6198 -4.4865 0.4906 20 6 6.3963 -4.3045 -0.6385 21 6 7.4344 -3.3918 -0.6235 22 6 7.6927 -2.6574 0.5188 23 6 6.9129 -2.8357 1.6461 24 6 3.2218 -3.0479 1.4908 25 1 -0.3634 0.0907 -1.0236 26 1 -0.3634 -0.9319 0.4332 27 1 -0.3634 0.8411 0.5904 28 1 -0.1092 3.1308 -1.2294 29 1 1.6105 -2.0296 -0.5084 30 1 3.1520 -1.1396 -0.5041 31 1 3.9958 -0.1751 1.4267 32 1 2.8516 -0.0408 2.7950 33 1 5.3636 -1.5100 2.6874 34 1 4.2403 -1.3460 4.0668 35 1 5.6223 -3.7449 3.7503 36 1 4.6583 -4.9691 2.8899 37 1 4.8117 -5.2030 0.4805 38 1 6.1947 -4.8785 -1.5308 39 1 8.0440 -3.2528 -1.5042 40 1 8.5040 -1.9447 0.5305 41 1 7.1151 -2.2624 2.5387 42 1 2.5350 -3.8915 1.4234 43 1 3.9621 -3.0882 0.6920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076109897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:20 Heat of formation + Delta-G solvation = 58.722929 kcal Electronic energy + Delta-G solvation = -21736.505551 eV Core-core repulsion = 18782.296862 eV Total energy + Delta-G solvation = -2954.208689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.08060 -38.03564 -35.56648 -33.09915 -31.27659 -31.02010 -29.67197 -28.71915 -26.22422 -25.63579 -24.36238 -22.64136 -21.67863 -21.13412 -20.23813 -19.19801 -16.84420 -16.74444 -15.71073 -15.52442 -15.08854 -14.97605 -14.64161 -13.96293 -13.53280 -13.44348 -13.20013 -13.13889 -12.84200 -12.54463 -12.16373 -11.87321 -11.45628 -11.30648 -11.20092 -11.17522 -10.99211 -10.82578 -10.73559 -10.52396 -10.29483 -10.09114 -9.88702 -9.73949 -9.60804 -8.90682 -8.75562 -8.44702 -8.20885 -6.69777 -5.64361 -3.04534 1.29745 1.36097 3.42193 3.48013 3.48764 3.72893 4.30502 4.56166 4.74401 4.79272 4.95425 5.05804 5.07902 5.18325 5.37759 5.45505 5.48058 5.56841 5.62732 5.67703 5.76728 5.85894 5.96710 5.97761 6.00464 6.12533 6.20428 6.34975 6.41204 6.47039 6.48555 6.51854 6.62507 6.74122 6.85878 6.90252 6.95793 7.03362 7.21618 7.23434 7.51419 7.78686 7.89812 8.45894 9.32326 9.97504 10.45020 11.41344 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.005030 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.395168 B = 5565.270126 C = 5898.898908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.602 5.602 3 C -0.244 4.244 4 H 0.070 0.930 5 C -0.004 4.004 6 N -0.911 5.911 7 Si 0.899 3.101 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.162 3.838 12 C -0.105 4.105 13 H 0.070 0.930 14 C -0.108 4.108 15 C 0.025 3.975 16 N -0.507 5.507 17 C 0.082 3.918 18 C -0.115 4.115 19 C -0.106 4.106 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.110 4.110 24 C 0.029 3.971 25 H 0.025 0.975 26 H -0.005 1.005 27 H 0.045 0.955 28 H 0.251 0.749 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.071 0.929 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.710 -13.618 4.892 18.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.325 5.325 3 C -0.373 4.373 4 H 0.087 0.913 5 C -0.201 4.201 6 N -0.558 5.558 7 Si 0.730 3.270 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.212 1.212 11 C 0.034 3.966 12 C -0.127 4.127 13 H 0.089 0.911 14 C -0.146 4.146 15 C -0.103 4.103 16 N -0.228 5.228 17 C -0.047 4.047 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.139 4.139 21 C -0.139 4.139 22 C -0.138 4.138 23 C -0.129 4.129 24 C -0.099 4.099 25 H 0.044 0.956 26 H 0.013 0.987 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.203 -13.624 5.263 18.407 hybrid contribution 0.967 1.298 -0.474 1.687 sum 12.170 -12.327 4.788 17.972 Atomic orbital electron populations 1.20778 0.82574 0.95385 0.99176 1.43880 1.01848 1.00632 1.86108 1.19189 0.95150 0.84656 1.38349 0.91255 1.24883 0.97643 0.98029 0.99581 1.70099 1.16990 1.26213 1.42461 0.86403 0.78284 0.84157 0.78169 1.21153 1.21712 1.21215 1.20673 0.95739 0.88254 0.91894 1.22783 0.97710 0.92129 1.00116 0.91136 1.22276 0.96810 0.97228 0.98264 1.23075 0.98362 0.88412 1.00449 1.65148 1.22356 1.05532 1.29813 1.21376 0.90776 0.98370 0.94135 1.20606 0.96584 0.97076 0.97440 1.21061 0.99119 0.99340 0.92932 1.21142 0.95772 0.98763 0.98205 1.21142 0.98020 0.96659 0.98062 1.21140 0.99776 0.99483 0.93410 1.21081 0.95287 0.97935 0.98587 1.23494 0.97497 0.98965 0.89957 0.95650 0.98664 0.93589 0.93894 0.94766 0.93877 0.91248 0.91388 0.93517 0.91203 0.90382 0.90045 0.86129 0.86143 0.86278 0.86240 0.86251 0.91021 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.20 8.97 59.84 0.54 4.74 16 2 N -0.60 -15.30 2.88 -181.12 -0.52 -15.82 16 3 C -0.24 -6.71 8.92 -15.06 -0.13 -6.84 16 4 H 0.07 1.86 6.36 -52.48 -0.33 1.53 16 5 C 0.00 -0.12 5.08 -17.43 -0.09 -0.21 16 6 N -0.91 -27.06 10.50 55.49 0.58 -26.48 16 7 Si 0.90 22.22 29.58 -169.99 -5.03 17.19 16 8 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 C 0.16 3.41 5.07 -4.04 -0.02 3.39 16 12 C -0.11 -1.92 3.31 -88.76 -0.29 -2.21 16 13 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 14 C -0.11 -1.95 5.66 -25.37 -0.14 -2.09 16 15 C 0.02 0.37 6.46 -2.75 -0.02 0.35 16 16 N -0.51 -7.21 5.54 -231.89 -1.28 -8.49 16 17 C 0.08 0.95 5.69 -4.97 -0.03 0.92 16 18 C -0.12 -1.39 3.95 -104.62 -0.41 -1.80 16 19 C -0.11 -1.23 7.51 -39.58 -0.30 -1.52 16 20 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 21 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 23 C -0.11 -1.31 8.19 -39.58 -0.32 -1.63 16 24 C 0.03 0.44 5.51 -1.90 -0.01 0.42 16 25 H 0.03 0.69 7.48 -51.93 -0.39 0.30 16 26 H -0.01 -0.12 8.03 -51.93 -0.42 -0.53 16 27 H 0.05 1.25 7.00 -51.93 -0.36 0.89 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.04 0.93 7.97 -51.93 -0.41 0.51 16 31 H 0.07 1.38 6.28 -51.93 -0.33 1.05 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.05 0.66 4.86 -51.93 -0.25 0.41 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 36 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.29 7.17 -52.49 -0.38 0.91 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.89 4.77 -51.93 -0.25 0.64 16 LS Contribution 331.51 15.07 5.00 5.00 Total: -1.00 -30.09 331.51 -10.58 -40.66 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.89 Total: -0.32 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -2.43 Total: -11.74 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -1.22 Total: -50.79 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.09 -10.58 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076109897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.383 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds