Wall clock time and date at job start Mon Mar 30 2020 01:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36931 * 119.99962 * 2 1 4 4 H 1.08006 * 119.99884 * 162.57047 * 3 2 1 5 5 C 1.38810 * 120.00184 * 342.57982 * 3 2 1 6 6 N 1.31612 * 119.99867 * 344.95408 * 5 3 2 7 7 Si 1.86803 * 120.00201 * 164.96364 * 5 3 2 8 8 H 1.48497 * 109.47116 * 59.99605 * 7 5 3 9 9 H 1.48499 * 109.47095 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46940 * 299.99400 * 7 5 3 11 11 C 1.46501 * 120.00009 * 179.72787 * 2 1 3 12 12 C 1.53006 * 109.47186 * 270.27677 * 11 2 1 13 13 H 1.08998 * 110.64123 * 56.69309 * 12 11 2 14 14 C 1.54595 * 110.71892 * 293.54591 * 12 11 2 15 15 C 1.54000 * 105.13836 * 219.68193 * 14 12 11 16 16 N 1.47901 * 107.05539 * 358.77995 * 15 14 12 17 17 C 1.46897 * 111.00094 * 145.84645 * 16 15 14 18 18 C 1.50706 * 109.46906 * 290.11968 * 17 16 15 19 19 C 1.38232 * 120.00297 * 269.73157 * 18 17 16 20 20 C 1.38234 * 120.00133 * 179.76593 * 19 18 17 21 21 C 1.38236 * 119.99728 * 0.50142 * 20 19 18 22 22 C 1.38235 * 120.00244 * 359.75096 * 21 20 19 23 23 C 1.38236 * 119.99700 * 89.99893 * 18 17 16 24 24 C 1.48535 * 105.82443 * 25.32878 * 16 15 14 25 25 H 1.09001 * 109.47489 * 84.93758 * 1 2 3 26 26 H 1.09001 * 109.47571 * 204.93438 * 1 2 3 27 27 H 1.08999 * 109.47389 * 324.93389 * 1 2 3 28 28 H 0.97005 * 120.00248 * 180.02562 * 6 5 3 29 29 H 1.09004 * 109.47158 * 30.26981 * 11 2 1 30 30 H 1.08998 * 109.47422 * 150.27467 * 11 2 1 31 31 H 1.08997 * 110.31069 * 338.59959 * 14 12 11 32 32 H 1.09003 * 110.31207 * 100.67365 * 14 12 11 33 33 H 1.09000 * 109.91469 * 118.12948 * 15 14 12 34 34 H 1.08996 * 109.91764 * 239.42222 * 15 14 12 35 35 H 1.08995 * 109.47538 * 50.11901 * 17 16 15 36 36 H 1.08998 * 109.47335 * 170.12538 * 17 16 15 37 37 H 1.08003 * 119.99528 * 359.97438 * 19 18 17 38 38 H 1.08004 * 119.99935 * 180.22995 * 20 19 18 39 39 H 1.08006 * 119.99802 * 179.72181 * 21 20 19 40 40 H 1.07992 * 119.99906 * 179.97438 * 22 21 20 41 41 H 1.07994 * 120.00323 * 0.02562 * 23 18 17 42 42 H 1.08999 * 110.66542 * 202.36559 * 24 16 15 43 43 H 1.08993 * 110.66826 * 79.22612 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1925 1.2073 0.2802 5 6 1.5033 2.3604 -0.3599 6 7 0.3423 2.3100 -0.9776 7 14 2.2816 4.0127 0.0323 8 1 3.6024 4.1096 -0.6395 9 1 1.3987 5.1035 -0.4532 10 1 2.4627 4.1385 1.5008 11 6 2.1975 -1.2687 0.0060 12 6 2.4464 -1.7071 1.4507 13 1 1.5059 -1.7856 1.9959 14 6 3.4103 -0.7288 2.1606 15 6 4.3301 -1.6202 3.0157 16 7 3.8853 -3.0170 2.8194 17 6 5.0249 -3.9430 2.8604 18 6 5.8748 -3.7484 1.6312 19 6 5.6198 -4.4865 0.4906 20 6 6.3963 -4.3045 -0.6385 21 6 7.4344 -3.3918 -0.6235 22 6 7.6927 -2.6574 0.5188 23 6 6.9129 -2.8357 1.6461 24 6 3.2218 -3.0479 1.4908 25 1 -0.3634 0.0907 -1.0236 26 1 -0.3634 -0.9319 0.4332 27 1 -0.3634 0.8411 0.5904 28 1 -0.1092 3.1308 -1.2294 29 1 1.6105 -2.0296 -0.5084 30 1 3.1520 -1.1396 -0.5041 31 1 3.9958 -0.1751 1.4267 32 1 2.8516 -0.0408 2.7950 33 1 5.3636 -1.5100 2.6874 34 1 4.2403 -1.3460 4.0668 35 1 5.6223 -3.7449 3.7503 36 1 4.6583 -4.9691 2.8899 37 1 4.8117 -5.2030 0.4805 38 1 6.1947 -4.8785 -1.5308 39 1 8.0440 -3.2528 -1.5042 40 1 8.5040 -1.9447 0.5305 41 1 7.1151 -2.2624 2.5387 42 1 2.5350 -3.8915 1.4234 43 1 3.9621 -3.0882 0.6920 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076109897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:19 Heat of formation + Delta-G solvation = 41.877631 kcal Electronic energy + Delta-G solvation = -21737.236018 eV Core-core repulsion = 18782.296862 eV Total energy + Delta-G solvation = -2954.939156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09530 -39.19526 -37.33953 -34.51108 -32.95289 -31.92141 -31.00590 -30.03244 -28.00204 -27.31580 -25.74071 -23.61105 -22.97495 -22.63295 -21.30690 -20.72088 -18.78297 -17.70549 -17.05272 -16.71253 -16.62658 -16.01372 -15.89957 -15.42008 -15.06441 -14.93359 -14.51853 -14.35029 -14.19423 -13.87556 -13.46759 -13.20151 -13.04547 -12.87515 -12.65600 -12.51200 -12.34184 -12.26765 -12.15213 -12.06316 -12.02404 -11.80380 -11.52821 -11.40164 -11.34496 -10.57762 -9.77213 -9.63337 -9.31591 -8.77701 -7.79261 -5.21194 0.43717 0.50969 1.44554 1.47290 1.53452 2.52282 2.85394 3.20322 3.34316 3.60453 3.81972 3.93066 4.00911 4.09125 4.14695 4.16310 4.27776 4.40426 4.46384 4.62218 4.63714 4.71390 4.79257 4.80465 4.84301 4.89467 4.92974 4.98645 5.09870 5.13903 5.16589 5.22088 5.36829 5.44379 5.53038 5.56959 5.63893 5.64509 5.66548 5.74963 5.98144 6.12843 6.14064 6.34397 7.18529 7.92234 8.34826 9.25049 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.005030 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.395168 B = 5565.270126 C = 5898.898908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.617 5.617 3 C -0.244 4.244 4 H 0.073 0.927 5 C -0.061 4.061 6 N -0.943 5.943 7 Si 0.961 3.039 8 H -0.277 1.277 9 H -0.295 1.295 10 H -0.280 1.280 11 C 0.164 3.836 12 C -0.099 4.099 13 H 0.059 0.941 14 C -0.106 4.106 15 C 0.033 3.967 16 N -0.510 5.510 17 C 0.084 3.916 18 C -0.125 4.125 19 C -0.115 4.115 20 C -0.131 4.131 21 C -0.131 4.131 22 C -0.133 4.133 23 C -0.123 4.123 24 C 0.041 3.959 25 H 0.000 1.000 26 H 0.026 0.974 27 H 0.018 0.982 28 H 0.245 0.755 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.086 0.914 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.147 -14.912 5.611 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.340 5.340 3 C -0.374 4.374 4 H 0.090 0.910 5 C -0.255 4.255 6 N -0.592 5.592 7 Si 0.789 3.211 8 H -0.203 1.203 9 H -0.222 1.222 10 H -0.207 1.207 11 C 0.037 3.963 12 C -0.121 4.121 13 H 0.077 0.923 14 C -0.144 4.144 15 C -0.094 4.094 16 N -0.232 5.232 17 C -0.044 4.044 18 C -0.127 4.127 19 C -0.134 4.134 20 C -0.148 4.148 21 C -0.149 4.149 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.087 4.087 25 H 0.019 0.981 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.104 0.896 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.674 -14.955 5.998 20.499 hybrid contribution 0.569 1.619 -0.721 1.862 sum 13.243 -13.336 5.276 19.520 Atomic orbital electron populations 1.20507 0.82861 0.95744 0.97365 1.44121 1.02022 1.01703 1.86189 1.19487 0.95370 0.85624 1.36933 0.90960 1.25630 0.98450 1.01246 1.00181 1.70264 1.18410 1.26471 1.44018 0.85425 0.77539 0.80076 0.78012 1.20296 1.22166 1.20653 1.20793 0.94945 0.86723 0.93817 1.22556 0.97743 0.94158 0.97631 0.92263 1.22169 0.96952 0.97349 0.97922 1.22974 0.97925 0.88286 1.00242 1.65155 1.23722 1.05329 1.28958 1.21449 0.90016 0.98340 0.94599 1.20681 0.96892 0.97442 0.97691 1.21285 0.99559 0.99583 0.92969 1.21442 0.95658 0.98898 0.98846 1.21453 0.98271 0.96482 0.98667 1.21416 1.00244 0.99899 0.93493 1.21284 0.95571 0.98215 0.99134 1.23352 0.97362 0.97265 0.90684 0.98143 0.95553 0.96286 0.94538 0.93535 0.94652 0.93378 0.93422 0.92568 0.90255 0.89148 0.88594 0.84983 0.84473 0.84639 0.84890 0.85540 0.89571 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.25 8.97 127.77 1.15 10.39 16 2 N -0.62 -31.50 2.88 -726.93 -2.09 -33.59 16 3 C -0.24 -13.51 8.92 84.03 0.75 -12.76 16 4 H 0.07 3.89 6.36 -2.91 -0.02 3.87 16 5 C -0.06 -3.50 5.08 84.86 0.43 -3.07 16 6 N -0.94 -57.20 10.50 21.65 0.23 -56.97 16 7 Si 0.96 46.11 29.58 68.60 2.03 48.14 16 8 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 9 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 C 0.16 6.75 5.07 86.38 0.44 7.19 16 12 C -0.10 -3.50 3.31 -9.59 -0.03 -3.53 16 13 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.11 -3.77 5.66 31.48 0.18 -3.59 16 15 C 0.03 0.93 6.46 86.45 0.56 1.49 16 16 N -0.51 -13.18 5.54 -887.57 -4.91 -18.10 16 17 C 0.08 1.70 5.69 85.56 0.49 2.19 16 18 C -0.13 -2.72 3.95 -19.86 -0.08 -2.80 16 19 C -0.12 -2.41 7.51 22.27 0.17 -2.24 16 20 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 21 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 22 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 23 C -0.12 -2.70 8.19 22.27 0.18 -2.51 16 24 C 0.04 1.16 5.51 86.65 0.48 1.63 16 25 H 0.00 0.02 7.48 -2.39 -0.02 0.00 16 26 H 0.03 1.15 8.03 -2.39 -0.02 1.13 16 27 H 0.02 1.04 7.00 -2.39 -0.02 1.02 16 28 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 29 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 30 H 0.04 1.50 7.97 -2.39 -0.02 1.48 16 31 H 0.05 1.90 6.28 -2.39 -0.02 1.88 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.47 4.86 -2.39 -0.01 1.46 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 1.64 8.03 -2.39 -0.02 1.62 16 36 H 0.10 1.70 8.08 -2.39 -0.02 1.69 16 37 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 41 H 0.13 2.48 7.17 -2.91 -0.02 2.46 16 42 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.06 1.66 4.77 -2.39 -0.01 1.65 16 Total: -1.00 -64.15 331.51 1.60 -62.54 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.97 Total: 13.01 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 5.38 Total: -15.03 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -6.78 Total: -108.66 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -64.15 1.60 -62.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076109897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.422 kcal (2) G-P(sol) polarization free energy of solvation -64.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds