Wall clock time and date at job start Mon Mar 30 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31389 * 1 3 3 Si 1.86803 * 119.99905 * 2 1 4 4 H 1.48504 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46838 * 299.99198 * 3 2 1 6 6 H 1.48495 * 109.47245 * 59.99673 * 3 2 1 7 7 C 1.39011 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00057 * 180.02562 * 7 2 1 9 9 N 1.36876 * 119.99599 * 0.02562 * 7 2 1 10 10 C 1.34785 * 120.00015 * 179.97438 * 9 7 2 11 11 O 1.21742 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.46449 * 120.00209 * 179.97438 * 10 9 7 13 13 C 1.36780 * 125.45694 * 180.02562 * 12 10 9 14 14 C 1.37486 * 113.27383 * 180.02562 * 13 12 10 15 15 Br 1.89100 * 122.45380 * 180.02562 * 14 13 12 16 16 C 1.33900 * 115.08810 * 359.97438 * 14 13 12 17 17 S 1.70613 * 110.97303 * 0.23168 * 16 14 13 18 18 H 0.96998 * 120.00560 * 0.02562 * 1 2 3 19 19 H 0.97000 * 120.00323 * 0.02562 * 9 7 2 20 20 H 1.08009 * 123.36293 * 0.05809 * 13 12 10 21 21 H 1.08002 * 124.50970 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.7079 1.3465 0.0006 5 1 1.8892 2.3963 -1.2126 6 1 1.8891 2.3965 1.2124 7 6 2.0090 -1.2038 0.0005 8 1 3.0889 -1.2038 0.0010 9 7 1.3246 -2.3892 0.0005 10 6 1.9985 -3.5565 0.0005 11 8 3.2159 -3.5565 0.0010 12 6 1.2662 -4.8248 0.0011 13 6 1.8344 -6.0690 0.0017 14 6 0.9111 -7.0878 0.0016 15 35 1.4121 -8.9112 0.0029 16 6 -0.3687 -6.6942 0.0015 17 16 -0.4841 -4.9920 -0.0049 18 1 -0.4851 0.8400 -0.0004 19 1 0.3546 -2.3892 -0.0002 20 1 2.9017 -6.2346 0.0027 21 1 -1.2152 -7.3650 0.0010 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082552110.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:57 Heat of formation + Delta-G solvation = -27.580209 kcal Electronic energy + Delta-G solvation = -11271.770221 eV Core-core repulsion = 8898.660443 eV Total energy + Delta-G solvation = -2373.109779 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 274.936 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39212 -38.62453 -36.13659 -33.50482 -32.25032 -30.33748 -27.55217 -25.40503 -22.15020 -20.59724 -19.84998 -19.11085 -17.04687 -16.96271 -16.07661 -15.79683 -15.63820 -14.53683 -14.36748 -14.06092 -13.66183 -13.28633 -12.98525 -12.55085 -12.11337 -12.07874 -11.78340 -11.63358 -11.27931 -10.73135 -10.21633 -9.94004 -9.49523 -8.60595 -6.05984 -0.56240 0.12520 0.49015 1.07312 1.24459 1.42559 1.42639 1.57322 2.24424 2.24955 2.99289 3.16001 3.91431 4.15714 4.25537 4.64719 4.90326 5.03331 5.31364 5.84622 6.39476 6.94868 7.30545 7.85987 8.56665 Molecular weight = 274.94amu Principal moments of inertia in cm(-1) A = 0.061425 B = 0.004556 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.728070 B = 6144.140197 C = 6590.024469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.007 4.007 3 Si 1.002 2.998 4 H -0.271 1.271 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.548 5.548 10 C 0.492 3.508 11 O -0.629 6.629 12 C -0.254 4.254 13 C -0.069 4.069 14 C -0.122 4.122 15 Br -0.016 7.016 16 C -0.204 4.204 17 S 0.275 5.725 18 H 0.286 0.714 19 H 0.397 0.603 20 H 0.145 0.855 21 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 -14.793 -0.011 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.209 4.209 3 Si 0.824 3.176 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.182 5.182 10 C 0.280 3.720 11 O -0.519 6.519 12 C -0.376 4.376 13 C -0.103 4.103 14 C -0.214 4.214 15 Br 0.067 6.933 16 C -0.344 4.344 17 S 0.541 5.459 18 H 0.095 0.905 19 H 0.231 0.769 20 H 0.163 0.837 21 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.915 -14.249 -0.017 15.428 hybrid contribution 1.136 0.100 0.006 1.140 sum -4.779 -14.149 -0.010 14.935 Atomic orbital electron populations 1.69646 1.07053 1.30203 1.47623 1.26229 0.96654 1.02785 0.95210 0.84742 0.78032 0.76103 0.78691 1.19575 1.19118 1.19130 1.19863 0.93241 0.83393 1.50196 0.89438 1.41847 1.09308 1.04748 1.62310 1.17081 0.86966 0.83017 0.84910 1.90616 1.14628 1.87372 1.59235 1.24687 0.99340 0.97163 1.16395 1.20493 1.01189 0.89199 0.99384 1.20381 0.94336 0.92707 1.14023 1.96645 1.92847 1.05747 1.98033 1.25680 1.00736 1.01652 1.06339 1.83172 0.99307 0.98220 1.65187 0.90467 0.76852 0.83722 0.77134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.06 13.05 21.67 0.28 -46.78 14 2 C -0.01 -0.35 5.50 84.94 0.47 0.12 14 3 Si 1.00 41.22 29.55 68.60 2.03 43.24 14 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 14 5 H -0.27 -10.39 7.11 99.48 0.71 -9.69 14 6 H -0.27 -10.40 7.11 99.48 0.71 -9.69 14 7 C -0.34 -19.03 9.68 84.09 0.81 -18.22 14 8 H 0.09 5.24 7.15 -2.91 -0.02 5.22 14 9 N -0.55 -28.87 5.27 -310.81 -1.64 -30.51 14 10 C 0.49 25.23 7.73 86.38 0.67 25.90 14 11 O -0.63 -36.93 16.41 -4.48 -0.07 -37.00 14 12 C -0.25 -10.15 6.45 24.07 0.16 -9.99 14 13 C -0.07 -2.45 9.86 21.75 0.21 -2.24 14 14 C -0.12 -3.42 6.15 21.10 0.13 -3.29 14 15 Br -0.02 -0.37 33.86 -20.37 -0.69 -1.06 14 16 C -0.20 -4.85 10.74 66.83 0.72 -4.13 14 17 S 0.28 8.00 22.15 -56.49 -1.25 6.75 14 18 H 0.29 13.61 8.31 -92.71 -0.77 12.84 14 19 H 0.40 19.52 7.00 -92.71 -0.65 18.88 14 20 H 0.15 5.36 8.06 -2.91 -0.02 5.33 14 21 H 0.21 3.35 8.06 -2.91 -0.02 3.32 14 Total: -1.00 -64.10 236.30 2.46 -61.65 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.63 Total: 15.57 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 3.17 Total: -11.86 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -1.36 Total: -77.29 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.07 Total: -37.00 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 8.00 SS G_CDS: -1.25 Total: 6.75 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -0.69 Total: -1.06 kcal Total: -64.10 2.46 -61.65 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082552110.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.068 kcal (2) G-P(sol) polarization free energy of solvation -64.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds