Wall clock time and date at job start Mon Mar 30 2020 01:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31433 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48500 * 109.46743 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46798 * 299.99433 * 3 2 1 6 6 H 1.48497 * 109.47330 * 59.99528 * 3 2 1 7 7 C 1.38786 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00015 * 180.02562 * 7 2 1 9 9 O 1.34858 * 120.00224 * 0.02562 * 7 2 1 10 10 C 1.34800 * 117.00275 * 179.97438 * 9 7 2 11 11 O 1.21565 * 119.99964 * 0.02562 * 10 9 7 12 12 C 1.47189 * 120.00241 * 179.97438 * 10 9 7 13 13 C 1.40078 * 120.61857 * 0.02562 * 12 10 9 14 14 C 1.38305 * 118.36362 * 180.02562 * 13 12 10 15 15 C 1.38429 * 119.53301 * 359.97438 * 14 13 12 16 16 N 1.31824 * 121.25342 * 359.97438 * 15 14 13 17 17 C 1.32501 * 121.77443 * 0.02834 * 16 15 14 18 18 S 1.76200 * 119.84283 * 179.97438 * 17 16 15 19 19 C 1.81000 * 99.99711 * 359.97438 * 18 17 16 20 20 F 1.39897 * 109.47429 * 299.99949 * 19 18 17 21 21 F 1.39902 * 109.47336 * 60.00093 * 19 18 17 22 22 H 0.97006 * 119.99902 * 0.02562 * 1 2 3 23 23 H 1.07992 * 120.82222 * 359.97438 * 13 12 10 24 24 H 1.07992 * 120.23043 * 179.97438 * 14 13 12 25 25 H 1.08005 * 119.37543 * 180.02562 * 15 14 13 26 26 H 1.09007 * 109.46852 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.7083 1.3463 -0.0006 5 1 1.8896 2.3964 -1.2126 6 1 1.8895 2.3965 1.2124 7 6 2.0082 -1.2019 0.0005 8 1 3.0883 -1.2020 0.0010 9 8 1.3340 -2.3698 0.0005 10 6 2.0681 -3.5004 0.0005 11 8 3.2821 -3.4368 0.0010 12 6 1.3999 -4.8119 0.0011 13 6 0.0019 -4.9003 0.0011 14 6 -0.5770 -6.1564 0.0022 15 6 0.2312 -7.2802 0.0027 16 7 1.5455 -7.1775 0.0017 17 6 2.1533 -6.0001 0.0007 18 16 3.9136 -5.9221 0.0000 19 6 4.3064 -7.6889 0.0018 20 9 3.7643 -8.2861 1.1449 21 9 3.7635 -8.2886 -1.1396 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6089 -4.0097 0.0011 24 1 -1.6520 -6.2596 0.0027 25 1 -0.2235 -8.2598 0.0031 26 1 5.3885 -7.8205 0.0021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104860083.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:12 Heat of formation + Delta-G solvation = -149.513389 kcal Electronic energy + Delta-G solvation = -18520.287607 eV Core-core repulsion = 14940.354509 eV Total energy + Delta-G solvation = -3579.933098 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 275.021 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.95111 -48.05666 -41.61535 -40.42895 -37.38735 -34.46249 -33.80687 -32.58138 -27.98736 -27.79894 -25.71808 -24.89033 -22.49829 -20.00276 -19.83739 -19.08932 -18.56231 -18.30128 -17.85918 -17.53906 -16.85197 -16.78957 -16.17548 -15.78577 -15.29436 -15.04430 -14.81645 -14.42814 -14.39318 -14.13496 -13.71320 -13.47975 -13.25088 -12.78219 -12.48085 -12.23075 -12.05729 -11.94285 -11.33466 -10.93945 -10.91145 -10.74881 -10.56639 -9.08886 -8.61555 -6.37100 -0.62309 -0.03188 -0.03043 0.50902 1.33431 1.34166 1.52416 1.69385 2.02670 2.53490 2.57560 2.95714 2.96443 3.38209 3.58457 3.63916 3.70173 3.89175 3.96630 4.30122 4.66560 4.92713 5.01535 5.12138 5.44516 5.74127 6.47364 6.48555 6.83079 7.60490 8.58566 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.005432 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.444892 B = 5153.166662 C = 5955.121291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.000 4.000 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.087 0.913 9 O -0.224 6.224 10 C 0.428 3.572 11 O -0.545 6.545 12 C -0.159 4.159 13 C -0.022 4.022 14 C -0.158 4.158 15 C 0.140 3.860 16 N -0.493 5.493 17 C 0.132 3.868 18 S 0.008 5.992 19 C 0.240 3.760 20 F -0.191 7.191 21 F -0.191 7.191 22 H 0.282 0.718 23 H 0.149 0.851 24 H 0.192 0.808 25 H 0.212 0.788 26 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -13.553 0.004 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.201 4.201 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.104 0.896 9 O -0.131 6.131 10 C 0.277 3.723 11 O -0.445 6.445 12 C -0.169 4.169 13 C -0.049 4.049 14 C -0.180 4.180 15 C -0.021 4.021 16 N -0.205 5.205 17 C -0.116 4.116 18 S 0.245 5.755 19 C 0.078 3.922 20 F -0.173 7.173 21 F -0.173 7.173 22 H 0.091 0.909 23 H 0.166 0.834 24 H 0.209 0.791 25 H 0.229 0.771 26 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.393 -13.288 0.003 13.502 hybrid contribution -1.080 0.572 0.000 1.222 sum 1.313 -12.716 0.004 12.783 Atomic orbital electron populations 1.70050 1.07593 1.29672 1.45613 1.26555 0.96933 1.02198 0.94435 0.84549 0.77889 0.74528 0.79309 1.18770 1.18358 1.18347 1.21580 0.92499 0.80647 1.54385 0.89552 1.83905 1.39591 1.13736 1.75885 1.21168 0.86050 0.86100 0.78961 1.90510 1.15480 1.86435 1.52073 1.19817 0.95916 0.89847 1.11324 1.22105 0.91781 1.00879 0.90088 1.22561 1.04096 0.90632 1.00754 1.23765 0.87313 1.01490 0.89563 1.68253 1.14352 1.22312 1.15610 1.22992 0.99116 0.90729 0.98803 1.88080 0.95954 1.01759 1.89741 1.25013 1.00791 0.93366 0.73077 1.93046 1.88649 1.85295 1.50311 1.93048 1.88616 1.85194 1.50438 0.90874 0.83352 0.79074 0.77143 0.79723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.78 13.67 21.63 0.30 -50.49 15 2 C 0.00 0.02 5.49 84.88 0.47 0.48 15 3 Si 1.02 42.23 29.55 68.60 2.03 44.25 15 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 5 H -0.26 -10.03 7.11 99.48 0.71 -9.33 15 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 7 C -0.42 -24.75 9.65 67.95 0.66 -24.09 15 8 H 0.09 5.22 6.86 -2.91 -0.02 5.20 15 9 O -0.22 -13.04 9.06 10.61 0.10 -12.94 15 10 C 0.43 22.40 7.82 70.17 0.55 22.95 15 11 O -0.55 -29.78 13.05 19.62 0.26 -29.53 15 12 C -0.16 -6.70 5.91 -19.88 -0.12 -6.82 15 13 C -0.02 -0.74 9.73 22.73 0.22 -0.52 15 14 C -0.16 -3.70 10.09 22.33 0.23 -3.47 15 15 C 0.14 3.30 11.16 84.74 0.95 4.25 15 16 N -0.49 -15.88 7.80 -190.76 -1.49 -17.36 15 17 C 0.13 5.04 6.91 85.19 0.59 5.62 15 18 S 0.01 0.29 19.25 -56.49 -1.09 -0.80 15 19 C 0.24 6.38 5.42 113.37 0.61 6.99 15 20 F -0.19 -5.61 16.44 44.97 0.74 -4.87 15 21 F -0.19 -5.60 16.44 44.97 0.74 -4.86 15 22 H 0.28 14.43 8.31 -92.70 -0.77 13.66 15 23 H 0.15 5.31 7.70 -2.91 -0.02 5.29 15 24 H 0.19 2.61 8.06 -2.91 -0.02 2.59 15 25 H 0.21 2.86 8.06 -2.91 -0.02 2.84 15 26 H 0.19 3.09 8.14 -2.39 -0.02 3.08 15 Total: -1.00 -74.28 265.87 6.97 -67.31 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.24 Total: 3.89 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 4.15 Total: 5.39 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: -1.19 Total: -67.85 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: 0.35 Total: -42.47 kcal Atomic # 9 Polarization: -11.21 SS G_CDS: 1.48 Total: -9.73 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.09 Total: -0.80 kcal Total: -74.28 6.97 -67.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104860083.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.199 kcal (2) G-P(sol) polarization free energy of solvation -74.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds