Wall clock time and date at job start Mon Mar 30 2020 01:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48496 * 109.46834 * 240.00027 * 3 2 1 5 5 H 1.48501 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47216 * 119.99516 * 3 2 1 7 7 C 1.40053 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99436 * 180.02562 * 7 2 1 9 9 C 1.46369 * 120.00264 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99901 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99766 * 179.97438 * 9 7 2 12 12 N 1.40107 * 119.99689 * 180.02562 * 11 9 7 13 13 C 1.39132 * 119.99665 * 180.02562 * 12 11 9 14 14 N 1.32374 * 119.70064 * 0.02562 * 13 12 11 15 15 C 1.31977 * 121.65005 * 180.02562 * 14 13 12 16 16 C 1.38155 * 120.85641 * 359.97438 * 15 14 13 17 17 Cl 1.73601 * 120.34087 * 180.02562 * 16 15 14 18 18 C 1.38932 * 119.31469 * 0.02562 * 16 15 14 19 19 C 1.38424 * 118.48274 * 0.02562 * 18 16 15 20 20 Cl 1.73600 * 120.45544 * 179.97438 * 19 18 16 21 21 H 0.96996 * 120.00257 * 0.02562 * 1 2 3 22 22 H 0.96998 * 120.00336 * 359.97438 * 11 9 7 23 23 H 0.96998 * 119.99975 * 359.97438 * 12 11 9 24 24 H 1.07997 * 119.56617 * 180.27199 * 15 14 13 25 25 H 1.07993 * 120.75842 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6963 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2126 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 7 1.2485 -4.8610 0.0000 13 6 1.9442 -6.0659 0.0005 14 7 3.2679 -6.0589 0.0021 15 6 3.9664 -7.1788 0.0021 16 6 3.3350 -8.4076 0.0011 17 17 4.2670 -9.8723 0.0019 18 6 1.9467 -8.4591 -0.0005 19 6 1.2419 -7.2677 -0.0016 20 17 -0.4941 -7.2723 -0.0044 21 1 -0.4850 0.8400 -0.0004 22 1 2.9190 -3.6477 0.0002 23 1 0.2785 -4.8610 0.0000 24 1 5.0454 -7.1338 0.0079 25 1 1.4291 -9.4069 -0.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132818523.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:42 Heat of formation + Delta-G solvation = 18.858635 kcal Electronic energy + Delta-G solvation = -15924.775109 eV Core-core repulsion = 12798.355800 eV Total energy + Delta-G solvation = -3126.419309 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 274.997 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31578 -37.77132 -36.72956 -36.47190 -34.94285 -32.68169 -32.22386 -31.26465 -28.41978 -26.12629 -23.83191 -22.76362 -20.51477 -18.69098 -17.29535 -17.04683 -16.43791 -15.67909 -15.15186 -14.91461 -14.76402 -13.97204 -13.48308 -13.20244 -12.93109 -12.65407 -12.40188 -11.97052 -11.53449 -11.43045 -11.18561 -10.96604 -10.71520 -10.70670 -10.44351 -9.66442 -9.64527 -9.05502 -8.64435 -8.03942 -6.82469 -6.42805 -4.88101 0.95921 1.15416 1.88846 2.25715 2.70071 3.07019 3.12536 3.15725 3.61253 3.98289 4.22760 4.35670 4.63506 4.71022 5.14352 5.26885 5.54161 5.72004 5.81542 6.29573 6.93846 7.23901 7.65888 7.83640 8.05614 8.44899 8.78374 9.12877 10.30125 10.49577 Molecular weight = 275.00amu Principal moments of inertia in cm(-1) A = 0.029507 B = 0.004227 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.712810 B = 6622.718659 C = 7561.588706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.086 3.914 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.551 3.449 10 O -0.578 6.578 11 N -0.555 5.555 12 N -0.481 5.481 13 C 0.424 3.576 14 N -0.524 5.524 15 C 0.188 3.812 16 C -0.169 4.169 17 Cl -0.067 7.067 18 C -0.002 4.002 19 C -0.162 4.162 20 Cl -0.053 7.053 21 H 0.273 0.727 22 H 0.416 0.584 23 H 0.440 0.560 24 H 0.168 0.832 25 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.166 -14.769 0.002 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.094 0.906 9 C 0.357 3.643 10 O -0.459 6.459 11 N -0.307 5.307 12 N -0.199 5.199 13 C 0.180 3.820 14 N -0.244 5.244 15 C 0.026 3.974 16 C -0.203 4.203 17 Cl -0.039 7.039 18 C -0.028 4.028 19 C -0.199 4.199 20 Cl -0.025 7.025 21 H 0.084 0.916 22 H 0.256 0.744 23 H 0.286 0.714 24 H 0.185 0.815 25 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.391 -13.633 0.003 14.660 hybrid contribution -0.022 -0.279 -0.002 0.280 sum 5.369 -13.912 0.002 14.912 Atomic orbital electron populations 1.69995 1.07172 1.28062 1.33709 1.25737 0.94793 1.00505 0.92452 0.86234 0.79672 0.80061 0.79721 1.19009 1.20384 1.19002 1.20626 0.93915 0.87678 1.54478 0.90554 1.18708 0.87711 0.80683 0.77166 1.90633 1.13781 1.85707 1.55825 1.46028 1.07753 0.93930 1.83031 1.43682 1.07712 0.95843 1.72641 1.18048 0.88507 0.84375 0.91081 1.67470 1.04499 1.29814 1.22626 1.22474 1.00220 0.84927 0.89813 1.21335 0.91783 0.88764 1.18450 1.98339 1.72746 1.35179 1.97622 1.20985 0.91866 0.97306 0.92670 1.20819 0.85953 0.93194 1.19943 1.98370 1.08178 1.98484 1.97425 0.91573 0.74428 0.71383 0.81463 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.76 11.83 55.55 0.66 -21.11 15 2 C 0.09 2.29 5.50 -17.36 -0.10 2.20 15 3 Si 0.92 19.16 29.56 -169.99 -5.02 14.13 15 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 7 C -0.53 -14.18 9.54 -35.63 -0.34 -14.52 15 8 H 0.08 1.85 7.85 -52.49 -0.41 1.43 15 9 C 0.55 15.10 7.86 -12.99 -0.10 15.00 15 10 O -0.58 -17.84 14.86 5.20 0.08 -17.77 15 11 N -0.56 -12.56 6.28 30.19 0.19 -12.37 15 12 N -0.48 -9.72 6.38 31.16 0.20 -9.52 15 13 C 0.42 7.22 7.60 -154.89 -1.18 6.04 15 14 N -0.52 -8.35 9.37 -12.36 -0.12 -8.46 15 15 C 0.19 2.36 10.97 -17.52 -0.19 2.17 15 16 C -0.17 -1.99 6.34 -39.35 -0.25 -2.24 15 17 Cl -0.07 -0.67 28.98 -51.86 -1.50 -2.18 15 18 C 0.00 -0.02 9.77 -39.26 -0.38 -0.40 15 19 C -0.16 -2.36 6.36 -39.16 -0.25 -2.61 15 20 Cl -0.05 -0.74 27.62 -51.86 -1.43 -2.17 15 21 H 0.27 7.08 8.29 -40.82 -0.34 6.74 15 22 H 0.42 8.58 7.93 -182.59 -1.45 7.13 15 23 H 0.44 9.16 6.66 -182.59 -1.22 7.94 15 24 H 0.17 1.61 8.06 -52.49 -0.42 1.19 15 25 H 0.15 1.44 8.06 -52.49 -0.42 1.02 15 LS Contribution 267.00 15.07 4.02 4.02 Total: -1.00 -30.79 267.00 -8.77 -39.56 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -3.05 Total: 10.21 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -2.79 Total: 5.63 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.93 Total: -51.45 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.08 Total: -17.77 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.13 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -2.94 Total: -4.35 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.79 -8.77 -39.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132818523.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.422 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds