Wall clock time and date at job start Mon Mar 30 2020 01:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48496 * 109.46834 * 240.00027 * 3 2 1 5 5 H 1.48501 * 109.47058 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47216 * 119.99516 * 3 2 1 7 7 C 1.40053 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99436 * 180.02562 * 7 2 1 9 9 C 1.46369 * 120.00264 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99901 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99766 * 179.97438 * 9 7 2 12 12 N 1.40107 * 119.99689 * 180.02562 * 11 9 7 13 13 C 1.39132 * 119.99665 * 180.02562 * 12 11 9 14 14 N 1.32374 * 119.70064 * 0.02562 * 13 12 11 15 15 C 1.31977 * 121.65005 * 180.02562 * 14 13 12 16 16 C 1.38155 * 120.85641 * 359.97438 * 15 14 13 17 17 Cl 1.73601 * 120.34087 * 180.02562 * 16 15 14 18 18 C 1.38932 * 119.31469 * 0.02562 * 16 15 14 19 19 C 1.38424 * 118.48274 * 0.02562 * 18 16 15 20 20 Cl 1.73600 * 120.45544 * 179.97438 * 19 18 16 21 21 H 0.96996 * 120.00257 * 0.02562 * 1 2 3 22 22 H 0.96998 * 120.00336 * 359.97438 * 11 9 7 23 23 H 0.96998 * 119.99975 * 359.97438 * 12 11 9 24 24 H 1.07997 * 119.56617 * 180.27199 * 15 14 13 25 25 H 1.07993 * 120.75842 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6963 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2126 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 7 1.2485 -4.8610 0.0000 13 6 1.9442 -6.0659 0.0005 14 7 3.2679 -6.0589 0.0021 15 6 3.9664 -7.1788 0.0021 16 6 3.3350 -8.4076 0.0011 17 17 4.2670 -9.8723 0.0019 18 6 1.9467 -8.4591 -0.0005 19 6 1.2419 -7.2677 -0.0016 20 17 -0.4941 -7.2723 -0.0044 21 1 -0.4850 0.8400 -0.0004 22 1 2.9190 -3.6477 0.0002 23 1 0.2785 -4.8610 0.0000 24 1 5.0454 -7.1338 0.0079 25 1 1.4291 -9.4069 -0.0018 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132818523.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:42 Heat of formation + Delta-G solvation = -2.011258 kcal Electronic energy + Delta-G solvation = -15925.680095 eV Core-core repulsion = 12798.355800 eV Total energy + Delta-G solvation = -3127.324295 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 274.997 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.51982 -39.59838 -37.82960 -37.54726 -36.54419 -34.68395 -33.35499 -32.85329 -29.89319 -27.98317 -25.00118 -24.01850 -22.34082 -20.24407 -18.75958 -18.46751 -17.83768 -17.34404 -16.72215 -16.17374 -16.04660 -15.55622 -14.96144 -14.61804 -14.58751 -13.96375 -13.54493 -13.27539 -13.22567 -12.77023 -12.74188 -12.53558 -12.15903 -12.07607 -11.97520 -10.96099 -10.81527 -10.72291 -10.15102 -10.09969 -8.39754 -8.38376 -6.94286 -0.14296 0.02922 0.80858 1.08415 1.31513 1.45218 1.45565 1.59416 2.26684 2.33913 2.51024 2.93821 3.47758 3.50572 3.70924 4.01020 4.10640 4.54541 4.75231 5.10433 5.25984 5.40353 5.87302 6.19326 6.41854 6.75736 6.92584 7.28035 8.31638 8.55389 Molecular weight = 275.00amu Principal moments of inertia in cm(-1) A = 0.029507 B = 0.004227 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.712810 B = 6622.718659 C = 7561.588706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.031 3.969 3 Si 1.006 2.994 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.253 1.253 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.538 3.462 10 O -0.626 6.626 11 N -0.548 5.548 12 N -0.506 5.506 13 C 0.405 3.595 14 N -0.541 5.541 15 C 0.182 3.818 16 C -0.152 4.152 17 Cl -0.040 7.040 18 C 0.005 3.995 19 C -0.164 4.164 20 Cl -0.052 7.052 21 H 0.279 0.721 22 H 0.424 0.576 23 H 0.433 0.567 24 H 0.200 0.800 25 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.416 -15.987 0.003 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.186 4.186 3 Si 0.824 3.176 4 H -0.177 1.177 5 H -0.199 1.199 6 H -0.176 1.176 7 C -0.593 4.593 8 H 0.115 0.885 9 C 0.344 3.656 10 O -0.511 6.511 11 N -0.298 5.298 12 N -0.228 5.228 13 C 0.166 3.834 14 N -0.261 5.261 15 C 0.022 3.978 16 C -0.185 4.185 17 Cl -0.012 7.012 18 C -0.021 4.021 19 C -0.201 4.201 20 Cl -0.023 7.023 21 H 0.089 0.911 22 H 0.265 0.735 23 H 0.277 0.723 24 H 0.216 0.784 25 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.735 -14.967 0.005 16.848 hybrid contribution -0.593 -0.263 -0.002 0.649 sum 7.142 -15.230 0.003 16.822 Atomic orbital electron populations 1.70155 1.09539 1.29559 1.35099 1.27014 0.95635 1.04894 0.91023 0.84941 0.78094 0.74045 0.80482 1.17654 1.19866 1.17643 1.21190 0.95113 0.88295 1.54751 0.88513 1.18982 0.87317 0.82312 0.76965 1.90579 1.15661 1.86861 1.58022 1.45356 1.07806 0.94618 1.82034 1.43595 1.07261 0.95481 1.76431 1.18252 0.89211 0.83929 0.92020 1.67445 1.04250 1.31725 1.22725 1.23016 1.01490 0.84363 0.88930 1.21476 0.91937 0.89645 1.15420 1.98365 1.72025 1.33426 1.97347 1.21324 0.92097 0.97497 0.91178 1.20916 0.86234 0.93107 1.19803 1.98373 1.08055 1.98456 1.97433 0.91125 0.73516 0.72302 0.78382 0.80422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.07 11.83 21.84 0.26 -47.81 15 2 C 0.03 1.65 5.50 85.31 0.47 2.12 15 3 Si 1.01 39.12 29.56 68.60 2.03 41.15 15 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 6 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 7 C -0.56 -30.36 9.54 24.83 0.24 -30.12 15 8 H 0.10 4.67 7.85 -2.91 -0.02 4.65 15 9 C 0.54 30.66 7.86 86.36 0.68 31.34 15 10 O -0.63 -40.60 14.86 -4.30 -0.06 -40.67 15 11 N -0.55 -25.59 6.28 -176.63 -1.11 -26.70 15 12 N -0.51 -21.14 6.38 -55.33 -0.35 -21.49 15 13 C 0.41 13.77 7.60 133.04 1.01 14.78 15 14 N -0.54 -16.70 9.37 -193.03 -1.81 -18.50 15 15 C 0.18 4.12 10.97 84.65 0.93 5.05 15 16 C -0.15 -3.09 6.34 22.42 0.14 -2.94 15 17 Cl -0.04 -0.66 28.98 -2.72 -0.08 -0.74 15 18 C 0.01 0.12 9.77 22.48 0.22 0.34 15 19 C -0.16 -4.61 6.36 22.54 0.14 -4.46 15 20 Cl -0.05 -1.43 27.62 -2.72 -0.08 -1.51 15 21 H 0.28 14.87 8.29 -92.71 -0.77 14.10 15 22 H 0.42 17.86 7.93 -213.32 -1.69 16.16 15 23 H 0.43 18.96 6.66 -213.32 -1.42 17.54 15 24 H 0.20 3.13 8.06 -2.91 -0.02 3.10 15 25 H 0.18 2.79 8.06 -2.91 -0.02 2.77 15 Total: -1.00 -69.28 267.00 0.80 -68.48 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -1.83 Total: 31.68 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 3.83 Total: 16.10 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -3.01 Total: -114.50 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -0.06 Total: -40.67 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.15 Total: -2.24 kcal Total: -69.28 0.80 -68.48 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132818523.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.473 kcal (2) G-P(sol) polarization free energy of solvation -69.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds