Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38236 * 120.00444 * 2 1 4 4 C 1.38217 * 120.00974 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.02874 * 0.02562 * 4 3 2 6 6 S 1.76198 * 119.99241 * 179.97438 * 5 4 3 7 7 O 1.42105 * 106.40457 * 336.45964 * 6 5 4 8 8 O 1.42098 * 106.39953 * 203.53674 * 6 5 4 9 9 N 1.65603 * 107.21666 * 89.99988 * 6 5 4 10 10 C 1.36931 * 119.99907 * 64.99934 * 9 6 5 11 11 H 1.08002 * 120.00438 * 0.02562 * 10 9 6 12 12 C 1.38817 * 119.99680 * 179.72167 * 10 9 6 13 13 N 1.31614 * 119.99888 * 0.27479 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.27671 * 12 10 9 15 15 H 1.48508 * 109.46872 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99997 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00044 * 14 12 10 18 18 C 1.38190 * 120.01185 * 0.23184 * 5 4 3 19 19 C 1.38328 * 120.00377 * 179.97438 * 2 1 3 20 20 Cl 1.73595 * 120.01619 * 0.04396 * 19 2 1 21 21 H 1.09003 * 109.47247 * 90.00409 * 1 2 3 22 22 H 1.08997 * 109.47146 * 209.99940 * 1 2 3 23 23 H 1.08998 * 109.47258 * 330.00187 * 1 2 3 24 24 H 1.08000 * 119.99391 * 359.94892 * 3 2 1 25 25 H 1.08001 * 119.98459 * 179.97438 * 4 3 2 26 26 H 0.97000 * 119.99674 * 244.99537 * 9 6 5 27 27 H 0.97005 * 119.99715 * 179.97438 * 13 12 10 28 28 H 1.07998 * 120.00672 * 179.74200 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0005 6 16 6.0345 0.0015 0.0005 7 8 6.4349 1.2516 -0.5439 8 8 6.4366 -1.2480 -0.5438 9 7 6.5247 0.0019 1.5824 10 6 6.2494 -1.0731 2.3847 11 1 5.7129 -1.9214 1.9858 12 6 6.6653 -1.0752 3.7091 13 7 7.3195 -0.0417 4.1950 14 14 6.2965 -2.5449 4.8015 15 1 5.5543 -3.5676 4.0214 16 1 7.5704 -3.1267 5.2953 17 1 5.4711 -2.1086 5.9563 18 6 3.5826 -1.1971 -0.0048 19 6 2.1988 -1.1979 0.0005 20 17 1.3313 -2.7016 0.0001 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6583 2.1324 -0.0008 25 1 4.1202 2.1327 0.0001 26 1 7.0068 0.7636 1.9405 27 1 7.6099 -0.0431 5.1206 28 1 4.1232 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144606350.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = -64.674937 kcal Electronic energy + Delta-G solvation = -16954.618287 eV Core-core repulsion = 13930.160741 eV Total energy + Delta-G solvation = -3024.457546 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.18297 -36.32875 -36.13496 -34.77472 -34.69410 -32.83068 -31.02469 -30.59079 -27.08867 -24.59433 -22.68417 -21.70978 -18.66990 -18.22777 -17.36342 -16.37972 -15.77718 -15.21096 -14.60824 -14.51098 -14.34199 -14.10016 -13.58651 -13.46190 -12.47065 -12.42860 -12.06709 -11.94841 -11.47092 -11.33760 -11.29004 -11.14153 -11.06590 -10.95247 -10.90306 -10.54694 -10.38661 -10.08611 -9.91463 -8.86943 -8.58145 -8.34082 -6.54713 -3.96662 1.01160 1.38764 1.51777 2.24622 3.14654 3.20942 3.24852 3.56000 4.02654 4.41640 4.73667 4.77661 4.82159 5.05202 5.13507 5.36587 5.49008 5.53674 5.60205 5.77853 5.93904 6.00794 6.24901 6.41114 6.45789 6.92669 6.96537 7.41097 8.59099 8.71633 9.15150 10.60822 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.007748 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.426768 B = 3612.768049 C = 4489.370832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.044 4.044 3 C -0.137 4.137 4 C -0.018 4.018 5 C -0.652 4.652 6 S 2.610 3.390 7 O -1.000 7.000 8 O -0.969 6.969 9 N -0.944 5.944 10 C -0.273 4.273 11 H 0.105 0.895 12 C 0.033 3.967 13 N -0.874 5.874 14 Si 0.922 3.078 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.279 1.279 18 C -0.007 4.007 19 C -0.061 4.061 20 Cl -0.074 7.074 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.133 0.867 25 H 0.140 0.860 26 H 0.411 0.589 27 H 0.275 0.725 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.438 0.228 -4.341 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.046 4.046 3 C -0.156 4.156 4 C -0.038 4.038 5 C -0.731 4.731 6 S 2.700 3.300 7 O -0.989 6.989 8 O -0.959 6.959 9 N -0.696 5.696 10 C -0.414 4.414 11 H 0.123 0.877 12 C -0.176 4.176 13 N -0.515 5.515 14 Si 0.748 3.252 15 H -0.189 1.189 16 H -0.203 1.203 17 H -0.205 1.205 18 C -0.027 4.027 19 C -0.088 4.088 20 Cl -0.046 7.046 21 H 0.094 0.906 22 H 0.093 0.907 23 H 0.090 0.910 24 H 0.150 0.850 25 H 0.158 0.842 26 H 0.247 0.753 27 H 0.085 0.915 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.103 0.056 -5.162 12.245 hybrid contribution -0.854 -0.400 1.187 1.516 sum -11.957 -0.344 -3.975 12.605 Atomic orbital electron populations 1.20921 0.90411 1.03567 1.02866 1.19895 0.96486 0.91684 0.96487 1.21066 0.94384 0.96951 1.03152 1.20970 0.94112 0.97332 0.91337 1.32232 1.31671 0.97295 1.11884 1.06640 0.74858 0.73090 0.75414 1.93419 1.82344 1.43958 1.79159 1.93478 1.80710 1.43516 1.78194 1.51818 1.59937 1.26138 1.31703 1.19399 1.35259 0.93602 0.93146 0.87723 1.25263 0.96884 0.98432 0.96982 1.69698 1.35887 1.29706 1.16216 0.85920 0.78555 0.80810 0.79877 1.18886 1.20321 1.20507 1.20822 0.91732 0.98395 0.91714 1.20888 0.92597 0.86472 1.08887 1.98332 1.76809 1.32324 1.97103 0.90558 0.90674 0.90967 0.84958 0.84218 0.75290 0.91487 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.62 36.01 0.35 -0.95 15 2 C -0.04 -0.64 5.88 -104.59 -0.62 -1.26 15 3 C -0.14 -1.97 9.70 -39.59 -0.38 -2.35 15 4 C -0.02 -0.31 9.52 -39.58 -0.38 -0.69 15 5 C -0.65 -12.54 5.89 -39.59 -0.23 -12.77 15 6 S 2.61 56.90 5.70 -107.50 -0.61 56.29 15 7 O -1.00 -22.92 17.28 -57.17 -0.99 -23.91 15 8 O -0.97 -23.25 16.98 -57.17 -0.97 -24.22 15 9 N -0.94 -22.25 5.75 31.50 0.18 -22.07 15 10 C -0.27 -6.77 9.63 -15.06 -0.15 -6.91 15 11 H 0.11 2.48 7.82 -52.49 -0.41 2.07 15 12 C 0.03 0.81 5.50 -17.43 -0.10 0.71 15 13 N -0.87 -22.64 13.06 55.49 0.72 -21.92 15 14 Si 0.92 19.38 29.55 -169.99 -5.02 14.36 15 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 17 H -0.28 -5.82 7.11 56.52 0.40 -5.41 15 18 C -0.01 -0.13 9.31 -39.55 -0.37 -0.50 15 19 C -0.06 -1.00 6.31 -39.50 -0.25 -1.25 15 20 Cl -0.07 -1.06 27.30 -51.86 -1.42 -2.48 15 21 H 0.08 0.72 8.14 -51.93 -0.42 0.29 15 22 H 0.07 0.80 6.90 -51.93 -0.36 0.44 15 23 H 0.07 0.65 8.09 -51.93 -0.42 0.23 15 24 H 0.13 1.45 8.06 -52.49 -0.42 1.03 15 25 H 0.14 2.19 7.62 -52.49 -0.40 1.79 15 26 H 0.41 9.79 8.02 -34.47 -0.28 9.52 15 27 H 0.28 6.68 8.31 -40.82 -0.34 6.35 15 28 H 0.15 2.68 7.61 -52.49 -0.40 2.28 15 LS Contribution 278.88 15.07 4.20 4.20 Total: -1.00 -29.30 278.88 -8.27 -37.57 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -2.24 Total: 8.13 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.12 Total: -25.96 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.91 Total: -43.98 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -1.96 Total: -48.13 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 56.90 SS G_CDS: -0.61 Total: 56.29 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.42 Total: -2.48 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.30 -8.27 -37.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144606350.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.102 kcal (2) G-P(sol) polarization free energy of solvation -29.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds