Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38236 * 120.00444 * 2 1 4 4 C 1.38217 * 120.00974 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.02874 * 0.02562 * 4 3 2 6 6 S 1.76198 * 119.99241 * 179.97438 * 5 4 3 7 7 O 1.42105 * 106.40457 * 336.45964 * 6 5 4 8 8 O 1.42098 * 106.39953 * 203.53674 * 6 5 4 9 9 N 1.65603 * 107.21666 * 89.99988 * 6 5 4 10 10 C 1.36931 * 119.99907 * 64.99934 * 9 6 5 11 11 H 1.08002 * 120.00438 * 0.02562 * 10 9 6 12 12 C 1.38817 * 119.99680 * 179.72167 * 10 9 6 13 13 N 1.31614 * 119.99888 * 0.27479 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.27671 * 12 10 9 15 15 H 1.48508 * 109.46872 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 119.99997 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00044 * 14 12 10 18 18 C 1.38190 * 120.01185 * 0.23184 * 5 4 3 19 19 C 1.38328 * 120.00377 * 179.97438 * 2 1 3 20 20 Cl 1.73595 * 120.01619 * 0.04396 * 19 2 1 21 21 H 1.09003 * 109.47247 * 90.00409 * 1 2 3 22 22 H 1.08997 * 109.47146 * 209.99940 * 1 2 3 23 23 H 1.08998 * 109.47258 * 330.00187 * 1 2 3 24 24 H 1.08000 * 119.99391 * 359.94892 * 3 2 1 25 25 H 1.08001 * 119.98459 * 179.97438 * 4 3 2 26 26 H 0.97000 * 119.99674 * 244.99537 * 9 6 5 27 27 H 0.97005 * 119.99715 * 179.97438 * 13 12 10 28 28 H 1.07998 * 120.00672 * 179.74200 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0005 6 16 6.0345 0.0015 0.0005 7 8 6.4349 1.2516 -0.5439 8 8 6.4366 -1.2480 -0.5438 9 7 6.5247 0.0019 1.5824 10 6 6.2494 -1.0731 2.3847 11 1 5.7129 -1.9214 1.9858 12 6 6.6653 -1.0752 3.7091 13 7 7.3195 -0.0417 4.1950 14 14 6.2965 -2.5449 4.8015 15 1 5.5543 -3.5676 4.0214 16 1 7.5704 -3.1267 5.2953 17 1 5.4711 -2.1086 5.9563 18 6 3.5826 -1.1971 -0.0048 19 6 2.1988 -1.1979 0.0005 20 17 1.3313 -2.7016 0.0001 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6583 2.1324 -0.0008 25 1 4.1202 2.1327 0.0001 26 1 7.0068 0.7636 1.9405 27 1 7.6099 -0.0431 5.1206 28 1 4.1232 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144606350.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = -84.713378 kcal Electronic energy + Delta-G solvation = -16955.487219 eV Core-core repulsion = 13930.160741 eV Total energy + Delta-G solvation = -3025.326478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46626 -38.10107 -37.52226 -36.73823 -36.47412 -34.03873 -32.83085 -31.89379 -28.22940 -26.43860 -23.99322 -23.01806 -20.40272 -20.03962 -19.00608 -18.18367 -17.18251 -16.51117 -16.35156 -16.05664 -15.93410 -15.26996 -15.20721 -14.79807 -13.84907 -13.47744 -13.40646 -13.21196 -13.13861 -13.04490 -13.03667 -12.87412 -12.71186 -12.38742 -12.32750 -12.23057 -12.05371 -11.85011 -11.47593 -10.22601 -10.10314 -9.86017 -8.31966 -5.89136 -0.42475 -0.18375 0.08367 1.01109 1.46893 1.48980 1.60037 2.16976 2.35923 2.66798 2.93793 3.21066 3.52597 3.67082 3.77718 4.01147 4.26341 4.40777 4.59770 4.69118 4.75262 4.88937 5.04011 5.09613 5.17113 5.24171 5.62254 5.67263 6.75412 6.94701 7.32562 8.86660 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.016262 B = 0.007748 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.426768 B = 3612.768049 C = 4489.370832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.030 4.030 3 C -0.126 4.126 4 C -0.027 4.027 5 C -0.671 4.671 6 S 2.674 3.326 7 O -1.005 7.005 8 O -0.996 6.996 9 N -0.974 5.974 10 C -0.312 4.312 11 H 0.104 0.896 12 C -0.014 4.014 13 N -0.927 5.927 14 Si 0.976 3.024 15 H -0.259 1.259 16 H -0.279 1.279 17 H -0.276 1.276 18 C -0.024 4.024 19 C -0.072 4.072 20 Cl -0.057 7.057 21 H 0.097 0.903 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.178 0.822 25 H 0.151 0.849 26 H 0.408 0.592 27 H 0.272 0.728 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.748 0.760 -5.552 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.031 4.031 3 C -0.145 4.145 4 C -0.047 4.047 5 C -0.757 4.757 6 S 2.766 3.234 7 O -0.995 6.995 8 O -0.986 6.986 9 N -0.727 5.727 10 C -0.446 4.446 11 H 0.122 0.878 12 C -0.215 4.215 13 N -0.569 5.569 14 Si 0.801 3.199 15 H -0.183 1.183 16 H -0.205 1.205 17 H -0.202 1.202 18 C -0.044 4.044 19 C -0.100 4.100 20 Cl -0.028 7.028 21 H 0.115 0.885 22 H 0.094 0.906 23 H 0.117 0.883 24 H 0.195 0.805 25 H 0.169 0.831 26 H 0.243 0.757 27 H 0.081 0.919 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.338 0.527 -6.274 15.659 hybrid contribution -0.113 -0.489 1.125 1.232 sum -14.451 0.038 -5.148 15.340 Atomic orbital electron populations 1.21073 0.87161 1.05006 1.04555 1.20473 0.98781 0.90759 0.93117 1.21532 0.93166 0.98878 1.00921 1.21271 0.95861 0.96562 0.90959 1.31238 1.28231 0.99357 1.16911 1.02699 0.75118 0.72182 0.73394 1.93439 1.83002 1.44315 1.78709 1.93466 1.81818 1.44993 1.78333 1.51260 1.64929 1.26556 1.29944 1.19440 1.36431 0.95258 0.93463 0.87810 1.25907 0.96971 1.00529 0.98134 1.69786 1.39321 1.31492 1.16324 0.85107 0.78175 0.78294 0.78370 1.18276 1.20490 1.20160 1.20822 0.93282 0.97630 0.92684 1.20998 0.91937 0.88225 1.08828 1.98339 1.76054 1.31386 1.97009 0.88458 0.90556 0.88337 0.80484 0.83104 0.75718 0.91856 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.62 71.24 0.69 -1.25 15 2 C -0.03 -0.74 5.88 -19.84 -0.12 -0.86 15 3 C -0.13 -3.04 9.70 22.26 0.22 -2.83 15 4 C -0.03 -0.85 9.52 22.27 0.21 -0.64 15 5 C -0.67 -25.07 5.89 22.26 0.13 -24.93 15 6 S 2.67 117.08 5.70 -56.49 -0.32 116.75 15 7 O -1.00 -45.41 17.28 -128.00 -2.21 -47.62 15 8 O -1.00 -48.34 16.98 -128.00 -2.17 -50.51 15 9 N -0.97 -47.53 5.75 -54.26 -0.31 -47.84 15 10 C -0.31 -16.08 9.63 84.04 0.81 -15.27 15 11 H 0.10 5.13 7.82 -2.91 -0.02 5.11 15 12 C -0.01 -0.71 5.50 84.86 0.47 -0.25 15 13 N -0.93 -50.57 13.06 21.65 0.28 -50.28 15 14 Si 0.98 41.14 29.55 68.60 2.03 43.17 15 15 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 16 H -0.28 -11.65 7.11 99.48 0.71 -10.94 15 17 H -0.28 -11.30 7.11 99.48 0.71 -10.60 15 18 C -0.02 -0.87 9.31 22.29 0.21 -0.66 15 19 C -0.07 -2.17 6.31 22.32 0.14 -2.03 15 20 Cl -0.06 -1.48 27.30 -2.72 -0.07 -1.55 15 21 H 0.10 1.25 8.14 -2.39 -0.02 1.23 15 22 H 0.08 1.25 6.90 -2.39 -0.02 1.24 15 23 H 0.10 1.13 8.09 -2.39 -0.02 1.11 15 24 H 0.18 2.72 8.06 -2.91 -0.02 2.70 15 25 H 0.15 4.32 7.62 -2.91 -0.02 4.29 15 26 H 0.41 20.38 8.02 -96.74 -0.78 19.60 15 27 H 0.27 14.00 8.31 -92.70 -0.77 13.23 15 28 H 0.14 5.04 7.61 -2.91 -0.02 5.02 15 Total: -1.00 -64.72 278.88 0.40 -64.33 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.43 Total: 22.27 kcal Atomic # 6 Polarization: -51.46 SS G_CDS: 2.75 Total: -48.71 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -0.03 Total: -98.12 kcal Atomic # 8 Polarization: -93.75 SS G_CDS: -4.39 Total: -98.13 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 117.08 SS G_CDS: -0.32 Total: 116.75 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.07 Total: -1.55 kcal Total: -64.72 0.40 -64.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144606350.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.388 kcal (2) G-P(sol) polarization free energy of solvation -64.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds