Wall clock time and date at job start Mon Mar 30 2020 01:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.46711 * 111.00002 * 191.46695 * 3 2 1 5 5 C 1.53387 * 108.27938 * 284.58030 * 4 3 2 6 6 N 1.46724 * 108.24487 * 293.22903 * 5 4 3 7 7 C 1.46909 * 110.99812 * 284.74365 * 6 5 4 8 8 C 1.52993 * 109.46936 * 191.42689 * 7 6 5 9 9 C 1.53003 * 109.47150 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47177 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00107 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00288 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99665 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00399 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47168 * 90.00020 * 14 12 10 16 16 H 1.48501 * 109.47506 * 210.00079 * 14 12 10 17 17 H 1.48502 * 109.47143 * 330.00355 * 14 12 10 18 18 C 1.39930 * 112.09997 * 49.50301 * 6 5 4 19 19 C 1.39218 * 117.92180 * 162.33586 * 18 6 5 20 20 C 1.38045 * 120.40429 * 179.43029 * 19 18 6 21 21 C 1.38260 * 120.01541 * 0.02562 * 20 19 18 22 22 C 1.38051 * 120.02503 * 0.08272 * 21 20 19 23 23 C 1.38950 * 122.49472 * 341.99155 * 18 6 5 24 24 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 29 29 H 1.09000 * 109.70449 * 44.28119 * 4 3 2 30 30 H 1.09004 * 109.69964 * 164.88487 * 4 3 2 31 31 H 1.09000 * 109.70887 * 173.54826 * 5 4 3 32 32 H 1.08994 * 109.74926 * 52.93697 * 5 4 3 33 33 H 1.08997 * 109.47033 * 311.43232 * 7 6 5 34 34 H 1.09005 * 109.46828 * 71.42903 * 7 6 5 35 35 H 1.09005 * 109.47445 * 299.99893 * 8 7 6 36 36 H 1.09002 * 109.47006 * 59.99697 * 8 7 6 37 37 H 1.08991 * 109.47249 * 300.00294 * 9 8 7 38 38 H 1.09005 * 109.46550 * 60.00253 * 9 8 7 39 39 H 0.96996 * 119.99895 * 179.97438 * 13 12 10 40 40 H 1.08004 * 119.79665 * 359.46106 * 19 18 6 41 41 H 1.07998 * 119.99268 * 179.97438 * 20 19 18 42 42 H 1.07998 * 119.98628 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.79642 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4604 1.4333 -0.2723 5 6 4.2044 0.9900 0.9937 6 7 3.9826 2.0003 2.0343 7 6 4.7872 3.2030 1.7806 8 6 4.7544 4.1080 3.0136 9 6 5.5930 5.3603 2.7496 10 6 5.5602 6.2520 3.9639 11 1 4.9978 5.9552 4.8369 12 6 6.2480 7.4470 3.9606 13 7 6.9324 7.8087 2.8974 14 14 6.2080 8.5521 5.4660 15 1 7.3290 8.1950 6.3722 16 1 6.3450 9.9692 5.0438 17 1 4.9181 8.3706 6.1791 18 6 2.6283 2.3234 2.1742 19 6 2.2284 2.9647 3.3434 20 6 0.9069 3.3175 3.5299 21 6 -0.0291 3.0340 2.5526 22 6 0.3569 2.3964 1.3906 23 6 1.6868 2.0345 1.1939 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.7017 0.7602 -1.0950 30 1 3.7514 2.4511 -0.5322 31 1 5.2707 0.9071 0.7834 32 1 3.8199 0.0268 1.3287 33 1 5.8166 2.9135 1.5695 34 1 4.3781 3.7399 0.9247 35 1 3.7249 4.3975 3.2246 36 1 5.1635 3.5710 3.8695 37 1 6.6223 5.0705 2.5389 38 1 5.1842 5.8974 1.8937 39 1 7.4160 8.6495 2.8948 40 1 2.9567 3.1879 4.1091 41 1 0.6040 3.8144 4.4397 42 1 -1.0628 3.3106 2.6988 43 1 -0.3773 2.1771 0.6295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171943273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:15 Heat of formation + Delta-G solvation = 44.953345 kcal Electronic energy + Delta-G solvation = -21673.587296 eV Core-core repulsion = 18718.781513 eV Total energy + Delta-G solvation = -2954.805783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.10039 -36.99529 -36.80795 -33.73671 -31.85779 -30.60554 -30.30822 -30.07733 -27.15402 -25.43391 -23.52110 -23.29636 -22.74144 -21.67970 -20.35142 -18.99514 -16.92641 -16.52529 -16.32827 -15.88767 -15.01784 -14.89024 -14.72523 -14.49691 -14.20858 -13.81014 -13.74045 -13.11872 -12.73632 -12.44306 -12.30026 -12.23123 -11.97756 -11.71481 -11.71159 -11.62404 -11.14998 -10.98732 -10.82973 -10.72763 -10.51538 -10.35960 -9.83547 -9.57849 -9.29499 -9.09180 -8.84147 -8.32195 -7.84803 -7.69800 -5.97923 -3.99858 1.52586 1.61676 3.33612 3.39703 3.43253 3.61239 3.87122 4.07853 4.48419 4.73317 4.79047 4.91354 5.05268 5.15020 5.18569 5.25249 5.31556 5.38120 5.47236 5.53305 5.57635 5.60856 5.65202 5.72371 5.82449 5.86695 5.95233 6.01209 6.18430 6.24819 6.40883 6.44416 6.64293 6.69340 6.76803 6.85817 6.95387 7.12711 7.26493 7.28514 7.64275 7.68964 7.83846 8.01882 8.45096 9.06867 9.64012 11.13640 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.004408 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.593367 B = 6350.869684 C = 7040.691952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.055 3.945 3 N -0.491 5.491 4 C 0.017 3.983 5 C 0.018 3.982 6 N -0.493 5.493 7 C 0.060 3.940 8 C -0.118 4.118 9 C 0.024 3.976 10 C -0.517 4.517 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.078 3.922 19 C -0.100 4.100 20 C -0.122 4.122 21 C -0.130 4.130 22 C -0.114 4.114 23 C 0.059 3.941 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.139 0.861 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.996 -16.003 -5.581 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.070 4.070 3 N -0.207 5.207 4 C -0.112 4.112 5 C -0.111 4.111 6 N -0.209 5.209 7 C -0.064 4.064 8 C -0.155 4.155 9 C -0.014 4.014 10 C -0.555 4.555 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.022 4.022 19 C -0.120 4.120 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.134 4.134 23 C -0.040 4.040 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.156 0.844 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.876 -15.866 -5.657 20.610 hybrid contribution 0.344 0.637 0.567 0.920 sum -11.532 -15.229 -5.089 19.769 Atomic orbital electron populations 1.22197 0.94736 1.01767 1.03312 1.22144 0.96563 0.87388 1.00923 1.59263 1.14964 1.15564 1.30954 1.22893 0.86341 1.03601 0.98413 1.22852 1.01920 0.95644 0.90685 1.59298 1.04961 1.12297 1.44378 1.22426 0.96049 0.88453 0.99500 1.22053 1.01623 0.96723 0.95139 1.19057 0.94521 0.90765 0.97058 1.21219 1.30205 1.03785 1.00310 0.92675 1.25020 0.95459 0.97919 0.96067 1.69966 1.32385 1.22840 1.28407 0.86605 0.78427 0.79888 0.83160 1.20685 1.21258 1.19841 1.18875 0.89278 1.00683 0.93321 1.21278 0.96124 0.97956 0.96673 1.21011 0.92892 1.00669 0.99503 1.20928 0.99385 1.00184 0.94378 1.20982 0.94442 0.99773 0.98246 1.18771 0.94513 1.02651 0.88060 0.90894 0.92351 0.91861 0.94264 0.90523 0.89546 0.89581 0.89280 0.90490 0.90603 0.94481 0.91809 0.92575 0.96713 0.96799 0.93053 0.84358 0.85984 0.86288 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.79 37.16 0.33 -1.14 16 2 C 0.06 0.56 5.31 -3.82 -0.02 0.54 16 3 N -0.49 -6.28 4.66 -170.83 -0.80 -7.07 16 4 C 0.02 0.20 5.87 -3.73 -0.02 0.18 16 5 C 0.02 0.23 5.88 -3.72 -0.02 0.21 16 6 N -0.49 -7.87 4.66 -170.82 -0.80 -8.66 16 7 C 0.06 1.07 4.59 -3.82 -0.02 1.05 16 8 C -0.12 -2.48 4.03 -26.73 -0.11 -2.59 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.08 1.26 5.11 -83.53 -0.43 0.83 16 19 C -0.10 -1.63 7.56 -39.29 -0.30 -1.93 16 20 C -0.12 -1.73 10.04 -39.64 -0.40 -2.13 16 21 C -0.13 -1.67 10.04 -39.64 -0.40 -2.07 16 22 C -0.11 -1.52 7.57 -39.28 -0.30 -1.82 16 23 C 0.06 0.86 5.11 -83.53 -0.43 0.43 16 24 H 0.07 0.72 4.94 -51.93 -0.26 0.46 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 27 H 0.04 0.43 7.05 -51.93 -0.37 0.06 16 28 H 0.08 0.66 7.83 -51.93 -0.41 0.25 16 29 H 0.09 0.83 7.80 -51.93 -0.41 0.42 16 30 H 0.09 1.19 6.82 -51.93 -0.35 0.83 16 31 H 0.09 1.02 7.81 -51.93 -0.41 0.61 16 32 H 0.08 0.93 6.84 -51.93 -0.36 0.58 16 33 H 0.08 1.30 7.84 -51.93 -0.41 0.89 16 34 H 0.04 0.69 7.04 -51.93 -0.37 0.33 16 35 H 0.06 1.35 4.93 -51.93 -0.26 1.09 16 36 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.14 2.36 6.07 -52.48 -0.32 2.04 16 41 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.13 1.47 6.07 -52.49 -0.32 1.15 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -31.05 326.80 -10.32 -41.38 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.71 Total: 0.57 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -2.66 Total: -21.51 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.86 Total: -42.22 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.05 -10.32 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171943273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.329 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds