Wall clock time and date at job start Mon Mar 30 2020 01:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.46711 * 111.00002 * 191.46695 * 3 2 1 5 5 C 1.53387 * 108.27938 * 284.58030 * 4 3 2 6 6 N 1.46724 * 108.24487 * 293.22903 * 5 4 3 7 7 C 1.46909 * 110.99812 * 284.74365 * 6 5 4 8 8 C 1.52993 * 109.46936 * 191.42689 * 7 6 5 9 9 C 1.53003 * 109.47150 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47177 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00107 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00288 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99665 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00399 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47168 * 90.00020 * 14 12 10 16 16 H 1.48501 * 109.47506 * 210.00079 * 14 12 10 17 17 H 1.48502 * 109.47143 * 330.00355 * 14 12 10 18 18 C 1.39930 * 112.09997 * 49.50301 * 6 5 4 19 19 C 1.39218 * 117.92180 * 162.33586 * 18 6 5 20 20 C 1.38045 * 120.40429 * 179.43029 * 19 18 6 21 21 C 1.38260 * 120.01541 * 0.02562 * 20 19 18 22 22 C 1.38051 * 120.02503 * 0.08272 * 21 20 19 23 23 C 1.38950 * 122.49472 * 341.99155 * 18 6 5 24 24 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 29 29 H 1.09000 * 109.70449 * 44.28119 * 4 3 2 30 30 H 1.09004 * 109.69964 * 164.88487 * 4 3 2 31 31 H 1.09000 * 109.70887 * 173.54826 * 5 4 3 32 32 H 1.08994 * 109.74926 * 52.93697 * 5 4 3 33 33 H 1.08997 * 109.47033 * 311.43232 * 7 6 5 34 34 H 1.09005 * 109.46828 * 71.42903 * 7 6 5 35 35 H 1.09005 * 109.47445 * 299.99893 * 8 7 6 36 36 H 1.09002 * 109.47006 * 59.99697 * 8 7 6 37 37 H 1.08991 * 109.47249 * 300.00294 * 9 8 7 38 38 H 1.09005 * 109.46550 * 60.00253 * 9 8 7 39 39 H 0.96996 * 119.99895 * 179.97438 * 13 12 10 40 40 H 1.08004 * 119.79665 * 359.46106 * 19 18 6 41 41 H 1.07998 * 119.99268 * 179.97438 * 20 19 18 42 42 H 1.07998 * 119.98628 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.79642 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4604 1.4333 -0.2723 5 6 4.2044 0.9900 0.9937 6 7 3.9826 2.0003 2.0343 7 6 4.7872 3.2030 1.7806 8 6 4.7544 4.1080 3.0136 9 6 5.5930 5.3603 2.7496 10 6 5.5602 6.2520 3.9639 11 1 4.9978 5.9552 4.8369 12 6 6.2480 7.4470 3.9606 13 7 6.9324 7.8087 2.8974 14 14 6.2080 8.5521 5.4660 15 1 7.3290 8.1950 6.3722 16 1 6.3450 9.9692 5.0438 17 1 4.9181 8.3706 6.1791 18 6 2.6283 2.3234 2.1742 19 6 2.2284 2.9647 3.3434 20 6 0.9069 3.3175 3.5299 21 6 -0.0291 3.0340 2.5526 22 6 0.3569 2.3964 1.3906 23 6 1.6868 2.0345 1.1939 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.7017 0.7602 -1.0950 30 1 3.7514 2.4511 -0.5322 31 1 5.2707 0.9071 0.7834 32 1 3.8199 0.0268 1.3287 33 1 5.8166 2.9135 1.5695 34 1 4.3781 3.7399 0.9247 35 1 3.7249 4.3975 3.2246 36 1 5.1635 3.5710 3.8695 37 1 6.6223 5.0705 2.5389 38 1 5.1842 5.8974 1.8937 39 1 7.4160 8.6495 2.8948 40 1 2.9567 3.1879 4.1091 41 1 0.6040 3.8144 4.4397 42 1 -1.0628 3.3106 2.6988 43 1 -0.3773 2.1771 0.6295 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171943273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:15 Heat of formation + Delta-G solvation = 26.453217 kcal Electronic energy + Delta-G solvation = -21674.389522 eV Core-core repulsion = 18718.781513 eV Total energy + Delta-G solvation = -2955.608009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.18166 -38.07416 -37.98401 -35.67485 -33.56109 -31.78031 -31.33162 -31.17631 -28.84384 -26.75170 -24.92114 -24.54255 -23.79915 -22.81991 -22.08787 -20.11745 -18.53971 -18.00398 -17.37052 -17.22946 -16.53810 -16.23086 -15.85007 -15.78962 -15.50844 -15.02355 -14.84893 -14.40069 -14.16069 -13.81361 -13.71084 -13.47817 -13.12865 -13.04237 -12.95525 -12.76482 -12.59163 -12.49501 -12.33971 -12.15023 -11.85184 -11.64536 -11.50311 -11.23990 -11.16307 -10.78990 -10.56422 -9.99523 -8.89890 -8.86978 -8.20886 -6.31828 0.42681 0.49645 1.39234 1.40825 1.52028 2.39974 2.59001 2.80128 2.96310 3.12377 3.73833 3.89316 3.93980 4.01799 4.17261 4.23329 4.24380 4.32254 4.40758 4.54193 4.55727 4.59074 4.59913 4.61372 4.63866 4.76152 4.92183 4.96067 5.00076 5.08875 5.10852 5.21629 5.31805 5.36022 5.39434 5.49122 5.66148 5.70820 5.79807 5.82972 5.83832 6.09302 6.18795 6.25065 6.51164 6.84011 7.37280 8.91264 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.004408 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.593367 B = 6350.869684 C = 7040.691952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.054 3.946 3 N -0.496 5.496 4 C 0.019 3.981 5 C 0.019 3.981 6 N -0.501 5.501 7 C 0.075 3.925 8 C -0.101 4.101 9 C 0.029 3.971 10 C -0.541 4.541 11 H 0.059 0.941 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.052 3.948 19 C -0.124 4.124 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.116 4.116 23 C 0.054 3.946 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.024 0.976 35 H 0.062 0.938 36 H 0.053 0.947 37 H -0.007 1.007 38 H -0.014 1.014 39 H 0.264 0.736 40 H 0.120 0.880 41 H 0.137 0.863 42 H 0.150 0.850 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 -17.003 -5.575 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.071 4.071 3 N -0.213 5.213 4 C -0.110 4.110 5 C -0.110 4.110 6 N -0.217 5.217 7 C -0.050 4.050 8 C -0.138 4.138 9 C -0.008 4.008 10 C -0.579 4.579 11 H 0.077 0.923 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.047 4.047 19 C -0.144 4.144 20 C -0.150 4.150 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.045 4.045 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.011 0.989 38 H 0.004 0.996 39 H 0.072 0.928 40 H 0.138 0.862 41 H 0.155 0.845 42 H 0.168 0.832 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.509 -16.894 -5.654 22.358 hybrid contribution 0.794 0.903 0.511 1.306 sum -12.716 -15.991 -5.143 21.068 Atomic orbital electron populations 1.22167 0.93722 1.02900 1.02881 1.22270 0.97436 0.85825 1.01556 1.59346 1.15241 1.16986 1.29744 1.22888 0.86130 1.03029 0.98967 1.22955 1.02932 0.94910 0.90166 1.59205 1.04988 1.11550 1.45959 1.22101 0.96816 0.89013 0.97098 1.21787 1.00332 0.95125 0.96596 1.18934 0.93919 0.92537 0.95426 1.21639 1.30451 1.04657 1.01104 0.92298 1.25977 0.94815 0.99547 0.99420 1.70097 1.33110 1.23519 1.30670 0.85452 0.79018 0.77583 0.79050 1.19657 1.20657 1.18724 1.19033 0.89563 1.02103 0.94025 1.21305 0.96922 0.99461 0.96758 1.21255 0.92396 1.00688 1.00643 1.21295 1.00580 0.98835 0.93550 1.21299 0.94309 0.99134 0.98873 1.19007 0.94802 1.02455 0.88260 0.91843 0.90520 0.91603 0.94949 0.88478 0.86539 0.91792 0.88092 0.89530 0.90079 0.95793 0.91915 0.92853 0.98885 0.99568 0.92759 0.86222 0.84539 0.83182 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 8.79 71.98 0.63 -1.78 16 2 C 0.05 0.96 5.31 86.30 0.46 1.42 16 3 N -0.50 -11.85 4.66 -694.38 -3.24 -15.09 16 4 C 0.02 0.43 5.87 86.47 0.51 0.94 16 5 C 0.02 0.46 5.88 86.47 0.51 0.97 16 6 N -0.50 -16.09 4.66 -694.36 -3.24 -19.33 16 7 C 0.07 2.76 4.59 86.30 0.40 3.16 16 8 C -0.10 -4.43 4.03 30.59 0.12 -4.31 16 9 C 0.03 1.61 4.97 29.85 0.15 1.76 16 10 C -0.54 -31.68 9.11 25.60 0.23 -31.44 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 12 C 0.00 0.00 5.46 84.66 0.46 0.46 16 13 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 14 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 18 C 0.05 1.68 5.11 38.25 0.20 1.87 16 19 C -0.12 -4.12 7.56 22.46 0.17 -3.95 16 20 C -0.13 -3.64 10.04 22.23 0.22 -3.41 16 21 C -0.12 -2.95 10.04 22.23 0.22 -2.72 16 22 C -0.12 -2.87 7.57 22.46 0.17 -2.70 16 23 C 0.05 1.52 5.11 38.26 0.20 1.71 16 24 H 0.06 1.09 4.94 -2.39 -0.01 1.08 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 0.97 8.12 -2.38 -0.02 0.95 16 27 H 0.03 0.63 7.05 -2.39 -0.02 0.62 16 28 H 0.10 1.34 7.83 -2.39 -0.02 1.32 16 29 H 0.12 1.93 7.80 -2.39 -0.02 1.91 16 30 H 0.06 1.76 6.82 -2.38 -0.02 1.74 16 31 H 0.10 2.19 7.81 -2.39 -0.02 2.17 16 32 H 0.09 1.97 6.84 -2.39 -0.02 1.95 16 33 H 0.08 2.86 7.84 -2.39 -0.02 2.84 16 34 H 0.02 0.93 7.04 -2.38 -0.02 0.92 16 35 H 0.06 2.77 4.93 -2.38 -0.01 2.76 16 36 H 0.05 2.34 8.12 -2.39 -0.02 2.32 16 37 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 38 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 39 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.12 4.29 6.07 -2.91 -0.02 4.27 16 41 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 42 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.15 3.00 6.07 -2.91 -0.02 2.98 16 Total: -1.00 -68.03 326.80 1.47 -66.56 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.98 Total: 16.39 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 4.65 Total: -38.03 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -6.19 Total: -92.02 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.03 1.47 -66.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171943273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.009 kcal (2) G-P(sol) polarization free energy of solvation -68.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds