Wall clock time and date at job start Mon Mar 30 2020 01:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46874 * 110.99927 * 2 1 4 4 C 1.51885 * 110.85289 * 208.77855 * 3 2 1 5 5 C 1.51890 * 113.29600 * 293.74979 * 4 3 2 6 6 N 1.45842 * 110.97421 * 66.05322 * 5 4 3 7 7 C 1.46907 * 111.01139 * 151.16608 * 6 5 4 8 8 C 1.52997 * 109.47195 * 287.48057 * 7 6 5 9 9 C 1.53003 * 109.47231 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47318 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99933 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00217 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00056 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00304 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46992 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47570 * 119.99940 * 14 12 10 17 17 H 1.48500 * 109.47010 * 240.00110 * 14 12 10 18 18 C 1.40613 * 110.52162 * 274.78322 * 6 5 4 19 19 C 1.38772 * 119.62250 * 250.70348 * 18 6 5 20 20 C 1.38341 * 119.66080 * 180.08233 * 19 18 6 21 21 C 1.38260 * 120.24557 * 359.96420 * 20 19 18 22 22 C 1.38338 * 120.24302 * 359.97438 * 21 20 19 23 23 C 1.38454 * 120.28336 * 70.98431 * 18 6 5 24 24 H 1.09004 * 109.47376 * 293.19196 * 1 2 3 25 25 H 1.08996 * 109.47740 * 53.19575 * 1 2 3 26 26 H 1.09006 * 109.46762 * 173.19915 * 1 2 3 27 27 H 1.09008 * 109.19836 * 329.12616 * 3 2 1 28 28 H 1.08996 * 109.20219 * 88.41923 * 3 2 1 29 29 H 1.09000 * 108.72434 * 54.73378 * 4 3 2 30 30 H 1.09005 * 108.71942 * 172.89334 * 4 3 2 31 31 H 1.08993 * 109.20687 * 186.58007 * 5 4 3 32 32 H 1.09002 * 109.20310 * 305.88435 * 5 4 3 33 33 H 1.08999 * 109.47273 * 47.48815 * 7 6 5 34 34 H 1.09003 * 109.46627 * 167.48798 * 7 6 5 35 35 H 1.08999 * 109.47629 * 300.00540 * 8 7 6 36 36 H 1.09010 * 109.46861 * 60.00128 * 8 7 6 37 37 H 1.09007 * 109.46852 * 300.00497 * 9 8 7 38 38 H 1.08995 * 109.46759 * 60.00306 * 9 8 7 39 39 H 0.96992 * 120.00167 * 180.02562 * 13 12 10 40 40 H 1.07997 * 120.17035 * 0.06141 * 19 18 6 41 41 H 1.07994 * 119.87689 * 179.97438 * 20 19 18 42 42 H 1.08003 * 119.87706 * 180.02562 * 21 20 19 43 43 H 1.07999 * 120.17188 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3712 0.0000 4 6 3.3505 1.4301 -0.6833 5 6 4.4358 0.6801 0.0694 6 7 4.1671 -0.7532 0.0822 7 6 5.4161 -1.5227 0.1584 8 6 6.1452 -1.4460 -1.1845 9 6 7.4458 -2.2479 -1.1053 10 6 8.1643 -2.1718 -2.4278 11 1 7.7362 -1.6075 -3.2432 12 6 9.3685 -2.8216 -2.5966 13 7 9.8899 -3.5084 -1.6036 14 14 10.2594 -2.7267 -4.2357 15 1 9.4686 -1.8989 -5.1817 16 1 11.5964 -2.1119 -4.0376 17 1 10.4209 -4.0944 -4.7912 18 6 3.3060 -1.0838 1.1436 19 6 3.7983 -1.7909 2.2314 20 6 2.9515 -2.1181 3.2753 21 6 1.6214 -1.7426 3.2369 22 6 1.1277 -1.0366 2.1546 23 6 1.9729 -0.7120 1.1029 24 1 -0.3634 0.4047 0.9446 25 1 -0.3634 0.6156 -0.8228 26 1 -0.3633 -1.0205 -0.1217 27 1 1.2988 2.0225 -0.5283 28 1 2.0972 1.7161 1.0289 29 1 3.2578 1.0025 -1.6816 30 1 3.6499 2.4741 -0.7771 31 1 5.3968 0.8618 -0.4118 32 1 4.4758 1.0427 1.0965 33 1 6.0513 -1.1078 0.9410 34 1 5.1882 -2.5634 0.3890 35 1 5.5100 -1.8609 -1.9671 36 1 6.3731 -0.4052 -1.4152 37 1 8.0812 -1.8333 -0.3226 38 1 7.2175 -3.2885 -0.8748 39 1 10.7373 -3.9653 -1.7222 40 1 4.8371 -2.0846 2.2628 41 1 3.3308 -2.6687 4.1234 42 1 0.9657 -2.0008 4.0553 43 1 0.0886 -0.7435 2.1260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172548706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:47 Heat of formation + Delta-G solvation = 41.095910 kcal Electronic energy + Delta-G solvation = -21377.338177 eV Core-core repulsion = 18422.365122 eV Total energy + Delta-G solvation = -2954.973054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74269 -37.32335 -36.83786 -33.80677 -32.33421 -31.39911 -30.09154 -28.95687 -26.73538 -25.70464 -25.06504 -23.11003 -21.63120 -20.76103 -20.53800 -19.54986 -17.58122 -16.47214 -16.00276 -15.69770 -14.99459 -14.96657 -14.73101 -14.38773 -14.23781 -13.86078 -13.81960 -13.25328 -13.12516 -12.50144 -12.34147 -12.05139 -11.90199 -11.69308 -11.43715 -11.37287 -11.17778 -10.92567 -10.77774 -10.76454 -10.48423 -10.47535 -9.62182 -9.45288 -9.30348 -9.14987 -9.02755 -8.31791 -8.22124 -7.49442 -5.97026 -3.98755 1.38321 1.46132 3.33453 3.40844 3.45500 3.65736 3.78803 4.05771 4.49748 4.75114 4.89367 4.92810 5.02159 5.09042 5.16217 5.31007 5.34353 5.39089 5.45086 5.50803 5.54901 5.65797 5.69820 5.70753 5.76194 5.90498 5.93223 5.98863 6.23596 6.28843 6.32323 6.35848 6.56322 6.70582 6.79043 6.80819 6.98671 7.13215 7.19242 7.38024 7.67539 7.71861 7.85884 8.03509 8.47014 9.08567 9.65230 11.14540 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.025491 B = 0.003969 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.166424 B = 7053.824909 C = 7788.829311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.479 5.479 3 C 0.060 3.940 4 C -0.115 4.115 5 C 0.060 3.940 6 N -0.480 5.480 7 C 0.052 3.948 8 C -0.103 4.103 9 C 0.022 3.978 10 C -0.516 4.516 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.110 3.890 19 C -0.150 4.150 20 C -0.118 4.118 21 C -0.127 4.127 22 C -0.154 4.154 23 C 0.090 3.910 24 H 0.033 0.967 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.624 8.947 8.827 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.196 5.196 3 C -0.065 4.065 4 C -0.153 4.153 5 C -0.066 4.066 6 N -0.196 5.196 7 C -0.074 4.074 8 C -0.141 4.141 9 C -0.016 4.016 10 C -0.555 4.555 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C 0.012 3.988 19 C -0.171 4.171 20 C -0.137 4.137 21 C -0.147 4.147 22 C -0.175 4.175 23 C -0.008 4.008 24 H 0.051 0.949 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.517 8.580 7.863 21.870 hybrid contribution 0.652 0.325 0.490 0.878 sum -17.865 8.905 8.353 21.639 Atomic orbital electron populations 1.22566 0.86682 1.02939 1.00497 1.59682 1.07682 1.13635 1.38613 1.21947 0.97376 0.87595 0.99622 1.21204 0.93244 0.99525 1.01354 1.21727 0.99536 0.86290 0.99079 1.59227 1.14827 1.05838 1.39681 1.22509 0.87733 0.97434 0.99734 1.21656 0.97905 1.00565 0.93931 1.19078 0.90422 0.94987 0.97099 1.21280 1.04971 1.31026 0.98200 0.92604 1.25021 0.97481 0.95397 0.96605 1.69973 1.19081 1.33344 1.31235 0.86550 0.79581 0.77775 0.84192 1.19713 1.21079 1.21034 1.18678 0.91991 0.98413 0.89749 1.21580 1.00605 1.01978 0.92934 1.20999 0.93641 1.00510 0.98551 1.20904 0.95639 0.99901 0.98236 1.21341 1.00159 1.02552 0.93479 1.18504 0.92122 1.00429 0.89770 0.94852 0.90977 0.90852 0.90617 0.94387 0.90017 0.91135 0.89356 0.94823 0.94469 0.90657 0.92435 0.93388 0.96799 0.96563 0.93120 0.84991 0.86243 0.86466 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 8.42 60.06 0.51 0.70 16 2 N -0.48 -6.13 4.67 -179.53 -0.84 -6.96 16 3 C 0.06 0.67 5.38 -4.40 -0.02 0.65 16 4 C -0.11 -1.38 5.78 -27.86 -0.16 -1.55 16 5 C 0.06 0.85 5.13 -4.96 -0.03 0.82 16 6 N -0.48 -7.87 4.32 -172.50 -0.75 -8.61 16 7 C 0.05 0.94 3.55 -3.82 -0.01 0.92 16 8 C -0.10 -2.17 5.22 -26.73 -0.14 -2.31 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -14.83 9.11 -34.44 -0.31 -15.14 16 11 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 14 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.11 1.70 5.07 -83.55 -0.42 1.28 16 19 C -0.15 -2.16 8.77 -39.35 -0.35 -2.50 16 20 C -0.12 -1.45 10.04 -39.54 -0.40 -1.84 16 21 C -0.13 -1.45 10.04 -39.54 -0.40 -1.84 16 22 C -0.15 -1.84 8.99 -39.35 -0.35 -2.19 16 23 C 0.09 1.25 5.09 -83.54 -0.43 0.82 16 24 H 0.03 0.27 6.42 -51.93 -0.33 -0.06 16 25 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 26 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 27 H 0.08 0.68 7.61 -51.92 -0.40 0.29 16 28 H 0.04 0.43 7.79 -51.93 -0.40 0.02 16 29 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.31 6.19 -51.93 -0.32 0.98 16 32 H 0.03 0.47 7.78 -51.93 -0.40 0.06 16 33 H 0.04 0.65 7.61 -51.93 -0.40 0.26 16 34 H 0.07 1.39 7.05 -51.93 -0.37 1.02 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.99 6.61 -51.92 -0.34 0.64 16 37 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.13 1.90 6.03 -52.49 -0.32 1.58 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.13 1.22 5.76 -52.49 -0.30 0.91 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -31.48 331.88 -10.53 -42.01 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.91 Total: -1.63 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.75 Total: -20.23 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.85 Total: -42.04 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.48 -10.53 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172548706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.103 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds