Wall clock time and date at job start Mon Mar 30 2020 01:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46874 * 110.99927 * 2 1 4 4 C 1.51885 * 110.85289 * 208.77855 * 3 2 1 5 5 C 1.51890 * 113.29600 * 293.74979 * 4 3 2 6 6 N 1.45842 * 110.97421 * 66.05322 * 5 4 3 7 7 C 1.46907 * 111.01139 * 151.16608 * 6 5 4 8 8 C 1.52997 * 109.47195 * 287.48057 * 7 6 5 9 9 C 1.53003 * 109.47231 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47318 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99933 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00217 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00056 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00304 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46992 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47570 * 119.99940 * 14 12 10 17 17 H 1.48500 * 109.47010 * 240.00110 * 14 12 10 18 18 C 1.40613 * 110.52162 * 274.78322 * 6 5 4 19 19 C 1.38772 * 119.62250 * 250.70348 * 18 6 5 20 20 C 1.38341 * 119.66080 * 180.08233 * 19 18 6 21 21 C 1.38260 * 120.24557 * 359.96420 * 20 19 18 22 22 C 1.38338 * 120.24302 * 359.97438 * 21 20 19 23 23 C 1.38454 * 120.28336 * 70.98431 * 18 6 5 24 24 H 1.09004 * 109.47376 * 293.19196 * 1 2 3 25 25 H 1.08996 * 109.47740 * 53.19575 * 1 2 3 26 26 H 1.09006 * 109.46762 * 173.19915 * 1 2 3 27 27 H 1.09008 * 109.19836 * 329.12616 * 3 2 1 28 28 H 1.08996 * 109.20219 * 88.41923 * 3 2 1 29 29 H 1.09000 * 108.72434 * 54.73378 * 4 3 2 30 30 H 1.09005 * 108.71942 * 172.89334 * 4 3 2 31 31 H 1.08993 * 109.20687 * 186.58007 * 5 4 3 32 32 H 1.09002 * 109.20310 * 305.88435 * 5 4 3 33 33 H 1.08999 * 109.47273 * 47.48815 * 7 6 5 34 34 H 1.09003 * 109.46627 * 167.48798 * 7 6 5 35 35 H 1.08999 * 109.47629 * 300.00540 * 8 7 6 36 36 H 1.09010 * 109.46861 * 60.00128 * 8 7 6 37 37 H 1.09007 * 109.46852 * 300.00497 * 9 8 7 38 38 H 1.08995 * 109.46759 * 60.00306 * 9 8 7 39 39 H 0.96992 * 120.00167 * 180.02562 * 13 12 10 40 40 H 1.07997 * 120.17035 * 0.06141 * 19 18 6 41 41 H 1.07994 * 119.87689 * 179.97438 * 20 19 18 42 42 H 1.08003 * 119.87706 * 180.02562 * 21 20 19 43 43 H 1.07999 * 120.17188 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3712 0.0000 4 6 3.3505 1.4301 -0.6833 5 6 4.4358 0.6801 0.0694 6 7 4.1671 -0.7532 0.0822 7 6 5.4161 -1.5227 0.1584 8 6 6.1452 -1.4460 -1.1845 9 6 7.4458 -2.2479 -1.1053 10 6 8.1643 -2.1718 -2.4278 11 1 7.7362 -1.6075 -3.2432 12 6 9.3685 -2.8216 -2.5966 13 7 9.8899 -3.5084 -1.6036 14 14 10.2594 -2.7267 -4.2357 15 1 9.4686 -1.8989 -5.1817 16 1 11.5964 -2.1119 -4.0376 17 1 10.4209 -4.0944 -4.7912 18 6 3.3060 -1.0838 1.1436 19 6 3.7983 -1.7909 2.2314 20 6 2.9515 -2.1181 3.2753 21 6 1.6214 -1.7426 3.2369 22 6 1.1277 -1.0366 2.1546 23 6 1.9729 -0.7120 1.1029 24 1 -0.3634 0.4047 0.9446 25 1 -0.3634 0.6156 -0.8228 26 1 -0.3633 -1.0205 -0.1217 27 1 1.2988 2.0225 -0.5283 28 1 2.0972 1.7161 1.0289 29 1 3.2578 1.0025 -1.6816 30 1 3.6499 2.4741 -0.7771 31 1 5.3968 0.8618 -0.4118 32 1 4.4758 1.0427 1.0965 33 1 6.0513 -1.1078 0.9410 34 1 5.1882 -2.5634 0.3890 35 1 5.5100 -1.8609 -1.9671 36 1 6.3731 -0.4052 -1.4152 37 1 8.0812 -1.8333 -0.3226 38 1 7.2175 -3.2885 -0.8748 39 1 10.7373 -3.9653 -1.7222 40 1 4.8371 -2.0846 2.2628 41 1 3.3308 -2.6687 4.1234 42 1 0.9657 -2.0008 4.0553 43 1 0.0886 -0.7435 2.1260 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172548706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:47 Heat of formation + Delta-G solvation = 22.497304 kcal Electronic energy + Delta-G solvation = -21378.144673 eV Core-core repulsion = 18422.365122 eV Total energy + Delta-G solvation = -2955.779550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76615 -38.50569 -37.76980 -35.76808 -33.75720 -32.90869 -31.07686 -30.19186 -28.21912 -26.91583 -26.09470 -24.76100 -22.81321 -22.15926 -21.57690 -20.91153 -18.63501 -18.46522 -17.20735 -16.81050 -16.50073 -16.23377 -15.88005 -15.70612 -15.43212 -15.01244 -14.86841 -14.43486 -14.27325 -14.16432 -13.60406 -13.46673 -13.19737 -12.89926 -12.79186 -12.55442 -12.50010 -12.35294 -12.28726 -12.20784 -11.83782 -11.75415 -11.44762 -11.39431 -11.13325 -10.55957 -10.38714 -10.20512 -9.23640 -8.54882 -8.20444 -6.31399 0.39876 0.47224 1.39782 1.40396 1.54026 2.40697 2.73007 2.75893 2.98712 3.12778 3.85448 3.88741 3.99158 4.05744 4.15351 4.23632 4.28945 4.39512 4.43603 4.45969 4.54023 4.60881 4.64745 4.70517 4.75101 4.79018 4.88817 4.95636 4.97195 4.99959 5.06632 5.20687 5.31949 5.33552 5.40254 5.51507 5.60836 5.72257 5.83886 5.84472 6.05378 6.12785 6.18286 6.26008 6.59140 6.84934 7.37823 8.91819 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.025491 B = 0.003969 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.166424 B = 7053.824909 C = 7788.829311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.502 5.502 3 C 0.063 3.937 4 C -0.111 4.111 5 C 0.057 3.943 6 N -0.487 5.487 7 C 0.068 3.932 8 C -0.085 4.085 9 C 0.028 3.972 10 C -0.541 4.541 11 H 0.058 0.942 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.278 1.278 18 C 0.079 3.921 19 C -0.169 4.169 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.154 4.154 23 C 0.081 3.919 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.053 0.947 37 H -0.007 1.007 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.150 0.850 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.556 10.093 8.754 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.220 5.220 3 C -0.062 4.062 4 C -0.149 4.149 5 C -0.069 4.069 6 N -0.204 5.204 7 C -0.059 4.059 8 C -0.123 4.123 9 C -0.010 4.010 10 C -0.579 4.579 11 H 0.077 0.923 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.186 1.186 16 H -0.202 1.202 17 H -0.204 1.204 18 C -0.019 4.019 19 C -0.190 4.190 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.174 4.174 23 C -0.017 4.017 24 H 0.069 0.931 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.012 0.988 38 H 0.009 0.991 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.167 0.833 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.476 9.739 7.796 23.977 hybrid contribution 1.197 -0.047 0.586 1.334 sum -19.279 9.691 8.382 23.148 Atomic orbital electron populations 1.22638 0.84756 1.03245 1.02042 1.59653 1.09592 1.14328 1.38391 1.21968 0.97122 0.87342 0.99814 1.21204 0.93412 1.00324 0.99972 1.21809 1.00011 0.85655 0.99404 1.59230 1.13587 1.06590 1.40983 1.22149 0.88748 0.97448 0.97514 1.21368 0.95632 0.99724 0.95550 1.18954 0.92305 0.94051 0.95702 1.21685 1.05739 1.31376 0.99117 0.92346 1.25976 0.98334 0.94734 1.00725 1.70101 1.19664 1.34028 1.33594 0.85388 0.78295 0.78105 0.79204 1.18650 1.20160 1.20351 1.18862 0.92765 1.00213 0.90042 1.21625 1.00608 1.02796 0.93945 1.21270 0.94097 1.00478 0.98415 1.21308 0.95447 0.98379 0.98808 1.21671 1.01117 1.01876 0.92768 1.18705 0.91675 1.00573 0.90740 0.93149 0.89460 0.91240 0.88037 0.94364 0.91723 0.88665 0.90591 0.94693 0.94578 0.91697 0.93428 0.92801 0.98835 0.99141 0.92747 0.86275 0.84313 0.83253 0.83037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.42 127.69 1.07 1.40 16 2 N -0.50 -11.95 4.67 -721.90 -3.37 -15.32 16 3 C 0.06 1.27 5.38 85.94 0.46 1.73 16 4 C -0.11 -2.56 5.78 29.86 0.17 -2.39 16 5 C 0.06 1.64 5.13 86.14 0.44 2.08 16 6 N -0.49 -16.40 4.32 -699.68 -3.02 -19.43 16 7 C 0.07 2.60 3.55 86.30 0.31 2.90 16 8 C -0.08 -3.75 5.22 30.59 0.16 -3.59 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.54 -31.82 9.11 25.60 0.23 -31.58 16 11 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 12 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 13 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 14 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 15 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 C 0.08 2.46 5.07 37.91 0.19 2.65 16 19 C -0.17 -4.94 8.77 22.42 0.20 -4.75 16 20 C -0.12 -2.89 10.04 22.30 0.22 -2.66 16 21 C -0.12 -2.40 10.04 22.30 0.22 -2.18 16 22 C -0.15 -3.25 8.99 22.42 0.20 -3.05 16 23 C 0.08 2.15 5.09 37.91 0.19 2.35 16 24 H 0.05 0.65 6.42 -2.38 -0.02 0.63 16 25 H 0.09 1.14 7.87 -2.39 -0.02 1.12 16 26 H 0.07 1.17 8.12 -2.38 -0.02 1.15 16 27 H 0.10 1.50 7.61 -2.38 -0.02 1.48 16 28 H 0.04 0.77 7.79 -2.39 -0.02 0.75 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.08 2.31 6.19 -2.39 -0.01 2.30 16 32 H 0.03 0.98 7.78 -2.39 -0.02 0.96 16 33 H 0.04 1.35 7.61 -2.39 -0.02 1.33 16 34 H 0.06 2.56 7.05 -2.39 -0.02 2.54 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.05 2.29 6.61 -2.38 -0.02 2.28 16 37 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 38 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 39 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.12 3.66 6.03 -2.91 -0.02 3.64 16 41 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 42 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.15 2.35 5.76 -2.91 -0.02 2.33 16 Total: -1.00 -69.06 331.88 1.58 -67.47 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.98 Total: 12.61 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 4.69 Total: -34.97 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -6.11 Total: -92.32 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -69.06 1.58 -67.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172548706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.969 kcal (2) G-P(sol) polarization free energy of solvation -69.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds